RNA–Protein interactions for RNA: ENST00000585335.1

SCAMP4-209, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 5

Gene SCAMP4, Length 432 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-209ENST00000585335 ALDH1B1P30837 517 aa18.29■□□□□ 0.52
SCAMP4-209ENST00000585335 SUCLG2Q96I99 432 aa18.29■□□□□ 0.52
SCAMP4-209ENST00000585335 COG6Q9Y2V7 657 aa18.29■□□□□ 0.52
SCAMP4-209ENST00000585335 DLEC1Q9Y238 1755 aa18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 MYH3P11055 1940 aa18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 HOXA10P31260 410 aaPredicted RBP18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 C3orf67Q6ZVT6 689 aa18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 TTLL6Q8N841 843 aa18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 CHMP3Q9Y3E7 222 aa18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 COL11A2P13942 1736 aaPredicted RBP18.28■□□□□ 0.52
SCAMP4-209ENST00000585335 KIAA1551Q9HCM1 1747 aa18.27■□□□□ 0.52
SCAMP4-209ENST00000585335 GNAI2P04899 355 aa18.27■□□□□ 0.52
SCAMP4-209ENST00000585335 DALRD3Q5D0E6 543 aaKnown RBP18.27■□□□□ 0.52
SCAMP4-209ENST00000585335 C20orf194Q5TEA3 1177 aa18.27■□□□□ 0.52
SCAMP4-209ENST00000585335 TTLL11Q8NHH1 800 aa18.27■□□□□ 0.52
SCAMP4-209ENST00000585335 CRAMP1Q96RY5 1269 aa18.27■□□□□ 0.52
SCAMP4-209ENST00000585335 DCAF8L1A6NGE4 600 aa18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 FOXO4P98177 505 aa18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 LMBR1LQ6UX01 489 aa18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 CDC5LQ99459 802 aaKnown RBP18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 TMX4Q9H1E5 349 aaPredicted RBP18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 BICC1Q9H694 974 aaKnown RBP18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 LRRFIP2Q9Y608 721 aaKnown RBP18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 RTL9Q8NET4 1388 aa18.26■□□□□ 0.51
SCAMP4-209ENST00000585335 ZBTB7BO15156 539 aaPredicted RBP18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 CSF1RP07333 972 aa18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 KCNA3P22001 575 aa18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 IFIT5Q13325 482 aaKnown RBP18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 GRAPQ13588 217 aa18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 GRAPLQ8TC17 118 aaPredicted RBP18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 CCDC85AQ96PX6 553 aaPredicted RBP18.25■□□□□ 0.51
SCAMP4-209ENST00000585335 ANKRD18BA2A2Z9 1011 aa18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 CCDC57Q2TAC2 916 aa18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 TAF7LQ5H9L4 462 aa18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 TMC4Q7Z404 712 aa18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 PELP1Q8IZL8 1130 aaKnown RBP18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 GREM2Q9H772 168 aa18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 BCS1LQ9Y276 419 aa18.24■□□□□ 0.51
SCAMP4-209ENST00000585335 BBOX1O75936 387 aa18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 FAM161AQ3B820 660 aa18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 RABL6Q3YEC7 729 aaPredicted RBP18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 EPHA10Q5JZY3 1008 aa18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 SOGA3Q5TF21 947 aa18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 PRPF40BQ6NWY9 871 aaKnown RBP18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 ANKRD18AQ8IVF6 992 aa18.23■□□□□ 0.51
SCAMP4-209ENST00000585335 PPEF1O14829 653 aaPredicted RBP18.22■□□□□ 0.51
SCAMP4-209ENST00000585335 ITGA6P23229 1130 aa18.22■□□□□ 0.51
SCAMP4-209ENST00000585335 IGHMBP2P38935 993 aaKnown RBP18.22■□□□□ 0.51
SCAMP4-209ENST00000585335 ANKRD44Q8N8A2 993 aa18.22■□□□□ 0.51
SCAMP4-209ENST00000585335 KAZALD1Q96I82 304 aa18.22■□□□□ 0.51
SCAMP4-209ENST00000585335 BRCA1P38398 1863 aaKnown RBP18.21■□□□□ 0.51
SCAMP4-209ENST00000585335 RPS8P62241 208 aaKnown RBP18.21■□□□□ 0.51
SCAMP4-209ENST00000585335 GPR162Q16538 588 aa18.21■□□□□ 0.51
SCAMP4-209ENST00000585335 WWC3Q9ULE0 1092 aa18.21■□□□□ 0.51
SCAMP4-209ENST00000585335 CRBNQ96SW2 442 aa18.2■□□□□ 0.5
SCAMP4-209ENST00000585335 MPHOSPH8Q99549 860 aa18.2■□□□□ 0.5
SCAMP4-209ENST00000585335 SEC31BQ9NQW1 1179 aa18.2■□□□□ 0.5
SCAMP4-209ENST00000585335 ZBTB40Q9NUA8 1239 aa18.2■□□□□ 0.5
SCAMP4-209ENST00000585335 AAMPQ13685 434 aa18.19■□□□□ 0.5
SCAMP4-209ENST00000585335 GRIPAP1Q4V328 841 aa18.19■□□□□ 0.5
SCAMP4-209ENST00000585335 CC2D2BQ6DHV5 1058 aa18.19■□□□□ 0.5
SCAMP4-209ENST00000585335 CELF1Q92879 486 aaKnown RBP18.19■□□□□ 0.5
SCAMP4-209ENST00000585335 CACNA1SQ13698 1873 aa18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 SRGAP3O43295 1099 aa18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 C21orf2O43822 256 aa18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 MTX1Q13505 466 aa18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 C1orf115Q9H7X2 142 aa18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 ZNF219Q9P2Y4 722 aaPredicted RBP18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 ATP6V0A2Q9Y487 856 aa18.18■□□□□ 0.5
SCAMP4-209ENST00000585335 SLX4Q8IY92 1834 aa18.17■□□□□ 0.5
SCAMP4-209ENST00000585335 GRIN3BO60391 1043 aa18.17■□□□□ 0.5
SCAMP4-209ENST00000585335 CCDC93Q567U6 631 aa18.17■□□□□ 0.5
SCAMP4-209ENST00000585335 SP8Q8IXZ3 490 aa18.17■□□□□ 0.5
SCAMP4-209ENST00000585335 BSDC1Q9NW68 430 aaPredicted RBP18.17■□□□□ 0.5
SCAMP4-209ENST00000585335 ARFGEF1Q9Y6D6 1849 aa18.16■□□□□ 0.5
SCAMP4-209ENST00000585335 HMMRO75330 724 aa18.16■□□□□ 0.5
SCAMP4-209ENST00000585335 NEFLP07196 543 aa18.16■□□□□ 0.5
SCAMP4-209ENST00000585335 RTKN2Q8IZC4 609 aa18.16■□□□□ 0.5
SCAMP4-209ENST00000585335 SRCAPQ6ZRS2 3230 aa18.15■□□□□ 0.5
SCAMP4-209ENST00000585335 ATP8B2P98198 1209 aa18.15■□□□□ 0.5
SCAMP4-209ENST00000585335 LDHAL6AQ6ZMR3 332 aa18.15■□□□□ 0.5
SCAMP4-209ENST00000585335 RPAP2Q8IXW5 612 aaPredicted RBP18.15■□□□□ 0.5
SCAMP4-209ENST00000585335 CNNM1Q9NRU3 951 aa18.15■□□□□ 0.5
SCAMP4-209ENST00000585335 YBX3P16989 372 aaKnown RBP eCLIP18.14■□□□□ 0.493e-7■■□□□ 11.4
SCAMP4-209ENST00000585335 CEP85Q6P2H3 762 aa18.14■□□□□ 0.49
SCAMP4-209ENST00000585335 FBXO3Q9UK99 471 aa18.14■□□□□ 0.49
SCAMP4-209ENST00000585335 TAF1P21675 1872 aa18.14■□□□□ 0.49
SCAMP4-209ENST00000585335 ARHGAP27Q6ZUM4 889 aa18.13■□□□□ 0.49
SCAMP4-209ENST00000585335 C7orf43Q8WVR3 580 aa18.13■□□□□ 0.49
SCAMP4-209ENST00000585335 ZNF594Q96JF6 807 aaPredicted RBP18.13■□□□□ 0.49
SCAMP4-209ENST00000585335 ANKRD2Q9GZV1 360 aa18.13■□□□□ 0.49
SCAMP4-209ENST00000585335 ANKIB1Q9P2G1 1089 aa18.13■□□□□ 0.49
SCAMP4-209ENST00000585335 SPEF2Q9C093 1822 aa18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 PNMA6EA0A0J9YXQ4 647 aa18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 RFX5P48382 616 aaPredicted RBP18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 IRX6P78412 446 aaPredicted RBP18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 DPP8Q6V1X1 898 aaPredicted RBP18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 MPNDQ8N594 471 aa18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 SUPT20HQ8NEM7 779 aa18.12■□□□□ 0.49
SCAMP4-209ENST00000585335 EXOC6Q8TAG9 804 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms