RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TMC4Q7Z404 712 aa26.49■■□□□ 1.83
SHMT1-209ENST00000582653 FAM89AQ96GI7 184 aa26.49■■□□□ 1.83
SHMT1-209ENST00000582653 MRS2Q9HD23 443 aa26.49■■□□□ 1.83
SHMT1-209ENST00000582653 MKRN1Q9UHC7 482 aaKnown RBP26.49■■□□□ 1.83
SHMT1-209ENST00000582653 ZNRF3Q9ULT6 936 aa26.49■■□□□ 1.83
SHMT1-209ENST00000582653 TMEM88BA6NKF7 163 aa26.48■■□□□ 1.83
SHMT1-209ENST00000582653 ANP32CO43423 234 aa26.48■■□□□ 1.83
SHMT1-209ENST00000582653 SCNN1DP51172 638 aa26.48■■□□□ 1.83
SHMT1-209ENST00000582653 SF3B3Q15393 1217 aaKnown RBP26.48■■□□□ 1.83
SHMT1-209ENST00000582653 COL13A1Q5TAT6 717 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-209ENST00000582653 HSPA1AP0DMV8 641 aaKnown RBP26.47■■□□□ 1.83
SHMT1-209ENST00000582653 HSPA1BP0DMV9 641 aaKnown RBP26.47■■□□□ 1.83
SHMT1-209ENST00000582653 EPS15P42566 896 aa26.47■■□□□ 1.83
SHMT1-209ENST00000582653 MAP1SQ66K74 1059 aaPredicted RBP26.47■■□□□ 1.83
SHMT1-209ENST00000582653 TSPYL6Q8N831 410 aa26.47■■□□□ 1.83
SHMT1-209ENST00000582653 TSR2Q969E8 191 aaKnown RBP26.47■■□□□ 1.83
SHMT1-209ENST00000582653 LAMB2P55268 1798 aa26.46■■□□□ 1.83
SHMT1-209ENST00000582653 RTL5Q5HYW3 569 aaPredicted RBP26.46■■□□□ 1.83
SHMT1-209ENST00000582653 RIC3Q7Z5B4 369 aa26.46■■□□□ 1.83
SHMT1-209ENST00000582653 ADAMTSL1Q8N6G6 1762 aa26.46■■□□□ 1.83
SHMT1-209ENST00000582653 CXCL9Q07325 125 aa26.45■■□□□ 1.82
SHMT1-209ENST00000582653 KIAA2012Q0VF49 1180 aa26.45■■□□□ 1.82
SHMT1-209ENST00000582653 USP50Q70EL3 339 aaPredicted RBP26.45■■□□□ 1.82
SHMT1-209ENST00000582653 WWC1Q8IX03 1113 aa26.45■■□□□ 1.82
SHMT1-209ENST00000582653 CHMP4AQ9BY43 222 aa26.45■■□□□ 1.82
SHMT1-209ENST00000582653 CNTNAP1P78357 1384 aa26.44■■□□□ 1.82
SHMT1-209ENST00000582653 GOLGA2Q08379 1002 aa26.43■■□□□ 1.82
SHMT1-209ENST00000582653 CCDC27Q2M243 656 aa26.43■■□□□ 1.82
SHMT1-209ENST00000582653 GPRC5DQ9NZD1 345 aa26.42■■□□□ 1.82
SHMT1-209ENST00000582653 IRS4O14654 1257 aaPredicted RBP26.41■■□□□ 1.82
SHMT1-209ENST00000582653 CCDC30Q5VVM6 783 aa26.41■■□□□ 1.82
SHMT1-209ENST00000582653 CELF1Q92879 486 aaKnown RBP26.41■■□□□ 1.82
SHMT1-209ENST00000582653 MYD88Q99836 296 aa26.41■■□□□ 1.82
SHMT1-209ENST00000582653 LTBP1Q14766 1721 aa26.4■■□□□ 1.82
SHMT1-209ENST00000582653 ZBTB38Q8NAP3 1195 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-209ENST00000582653 ADARB2Q9NS39 739 aaKnown RBP26.4■■□□□ 1.82
SHMT1-209ENST00000582653 SALL2Q9Y467 1007 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-209ENST00000582653 DDX60Q8IY21 1712 aaKnown RBP26.39■■□□□ 1.82
SHMT1-209ENST00000582653 TAF1P21675 1872 aa26.39■■□□□ 1.82
SHMT1-209ENST00000582653 HSP90B1P14625 803 aaKnown RBP26.39■■□□□ 1.82
SHMT1-209ENST00000582653 TNIP1Q15025 636 aa26.39■■□□□ 1.82
SHMT1-209ENST00000582653 CIAPIN1Q6FI81 312 aa26.39■■□□□ 1.82
SHMT1-209ENST00000582653 NSFL1CQ9UNZ2 370 aaKnown RBP26.39■■□□□ 1.82
SHMT1-209ENST00000582653 VEGFBP49765 207 aa26.38■■□□□ 1.81
SHMT1-209ENST00000582653 DEFB115Q30KQ5 88 aa26.38■■□□□ 1.81
SHMT1-209ENST00000582653 CCDC191Q8NCU4 936 aa26.38■■□□□ 1.81
SHMT1-209ENST00000582653 RPS8P62241 208 aaKnown RBP26.37■■□□□ 1.81
SHMT1-209ENST00000582653 RASSF10A6NK89 507 aa26.36■■□□□ 1.81
SHMT1-209ENST00000582653 RAD17O75943 681 aa26.36■■□□□ 1.81
SHMT1-209ENST00000582653 GMPSP49915 693 aaPredicted RBP26.36■■□□□ 1.81
SHMT1-209ENST00000582653 WASHC4Q2M389 1173 aa26.36■■□□□ 1.81
SHMT1-209ENST00000582653 JARID2Q92833 1246 aaPredicted RBP26.36■■□□□ 1.81
SHMT1-209ENST00000582653 DDX58O95786 925 aaKnown RBP26.35■■□□□ 1.81
SHMT1-209ENST00000582653 METTL22Q9BUU2 404 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-209ENST00000582653 YDJCA8MPS7 323 aa26.34■■□□□ 1.81
SHMT1-209ENST00000582653 PCCAP05165 728 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-209ENST00000582653 TWISTNBQ3B726 338 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-209ENST00000582653 BCL2L13Q9BXK5 485 aa26.34■■□□□ 1.81
SHMT1-209ENST00000582653 POLLQ9UGP5 575 aa26.34■■□□□ 1.81
SHMT1-209ENST00000582653 PGAP2Q9UHJ9 254 aa26.34■■□□□ 1.81
SHMT1-209ENST00000582653 MAP3K2Q9Y2U5 619 aa26.34■■□□□ 1.81
SHMT1-209ENST00000582653 CDHR2Q9BYE9 1310 aa26.34■■□□□ 1.81
SHMT1-209ENST00000582653 GPSM2P81274 684 aa26.33■■□□□ 1.81
SHMT1-209ENST00000582653 NCBP3Q53F19 620 aaKnown RBP26.33■■□□□ 1.81
SHMT1-209ENST00000582653 TNS4Q8IZW8 715 aa26.33■■□□□ 1.81
SHMT1-209ENST00000582653 CWC25Q9NXE8 425 aaPredicted RBP26.33■■□□□ 1.81
SHMT1-209ENST00000582653 COL4A1P02462 1669 aa26.33■■□□□ 1.81
SHMT1-209ENST00000582653 IL16Q14005 1332 aa26.33■■□□□ 1.81
SHMT1-209ENST00000582653 C6orf229H3BNL8 230 aa26.32■■□□□ 1.8
SHMT1-209ENST00000582653 PDE8AO60658 829 aa26.32■■□□□ 1.8
SHMT1-209ENST00000582653 STK31Q9BXU1 1019 aa26.32■■□□□ 1.8
SHMT1-209ENST00000582653 PI4KAP2A4QPH2 592 aa26.31■■□□□ 1.8
SHMT1-209ENST00000582653 FMR1Q06787 632 aaKnown RBP eCLIP26.31■■□□□ 1.8
SHMT1-209ENST00000582653 CST9Q5W186 159 aa26.31■■□□□ 1.8
SHMT1-209ENST00000582653 KSR2Q6VAB6 950 aa26.31■■□□□ 1.8
SHMT1-209ENST00000582653 G2E3Q7L622 706 aa26.31■■□□□ 1.8
SHMT1-209ENST00000582653 PI4KAP1Q8N8J0 262 aa26.31■■□□□ 1.8
SHMT1-209ENST00000582653 ZC3H15Q8WU90 426 aaKnown RBP26.31■■□□□ 1.8
SHMT1-209ENST00000582653 SEC31BQ9NQW1 1179 aa26.31■■□□□ 1.8
SHMT1-209ENST00000582653 CNOT7Q9UIV1 285 aaKnown RBP26.31■■□□□ 1.8
SHMT1-209ENST00000582653 ABT1Q9ULW3 272 aaKnown RBP26.31■■□□□ 1.8
SHMT1-209ENST00000582653 DUOX1Q9NRD9 1551 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 RIMBP2O15034 1052 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 CCDC152Q4G0S7 254 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 FAM9BQ8IZU0 186 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 DPF2Q92785 391 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 EYA3Q99504 573 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 PODXL2Q9NZ53 605 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 LRRC37AA6NMS7 1700 aa26.3■■□□□ 1.8
SHMT1-209ENST00000582653 H7C1D1 291 aa26.29■■□□□ 1.8
SHMT1-209ENST00000582653 SLC4A2P04920 1241 aa26.29■■□□□ 1.8
SHMT1-209ENST00000582653 HIRAP54198 1017 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-209ENST00000582653 TBC1D16Q8TBP0 767 aa26.29■■□□□ 1.8
SHMT1-209ENST00000582653 WDR33Q9C0J8 1336 aaKnown RBP26.29■■□□□ 1.8
SHMT1-209ENST00000582653 FANCIQ9NVI1 1328 aa26.29■■□□□ 1.8
SHMT1-209ENST00000582653 TRAF5O00463 557 aa26.28■■□□□ 1.8
SHMT1-209ENST00000582653 FOXN1O15353 648 aa26.28■■□□□ 1.8
SHMT1-209ENST00000582653 IGKV5-2P06315 115 aa26.28■■□□□ 1.8
SHMT1-209ENST00000582653 WDR63Q8IWG1 891 aa26.28■■□□□ 1.8
SHMT1-209ENST00000582653 CCDC85AQ96PX6 553 aaPredicted RBP26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms