RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 USP17L11C9JVI0 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L21D6R901 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L18D6R9N7 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L22D6RA61 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L17D6RBQ6 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L19D6RCP7 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L20D6RJB6 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 USP17L24Q0WX57 530 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 DHX32Q7L7V1 743 aaKnown RBP8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 FAM35AQ86V20 835 aa8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 PROSER2Q86WR7 435 aaPredicted RBP8.28□□□□□ -1.08
SMCHD1-206ENST00000581631 CPB1P15086 417 aa8.27□□□□□ -1.09
SMCHD1-206ENST00000581631 GPLD1P80108 840 aa8.27□□□□□ -1.09
SMCHD1-206ENST00000581631 LARP1Q6PKG0 1096 aaKnown RBP8.27□□□□□ -1.09
SMCHD1-206ENST00000581631 ANKMY2Q8IV38 441 aa8.27□□□□□ -1.09
SMCHD1-206ENST00000581631 MYO19Q96H55 970 aa8.27□□□□□ -1.09
SMCHD1-206ENST00000581631 PPP1R12CQ9BZL4 782 aa8.27□□□□□ -1.09
SMCHD1-206ENST00000581631 HYAL3O43820 417 aaPredicted RBP8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 DEAF1O75398 565 aaPredicted RBP8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 EPB42P16452 691 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 NOS3P29474 1203 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 WEE1P30291 646 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 ARSDP51689 593 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 PCSK7Q16549 785 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 KRTAP1-3Q8IUG1 177 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 WFDC12Q8WWY7 111 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 HINFPQ9BQA5 517 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 USP21Q9UK80 565 aa8.26□□□□□ -1.09
SMCHD1-206ENST00000581631 TARSP26639 723 aaKnown RBP8.25□□□□□ -1.09
SMCHD1-206ENST00000581631 DGKZQ13574 1117 aa8.25□□□□□ -1.09
SMCHD1-206ENST00000581631 MEGF10Q96KG7 1140 aa8.25□□□□□ -1.09
SMCHD1-206ENST00000581631 OPLAHO14841 1288 aa8.24□□□□□ -1.09
SMCHD1-206ENST00000581631 FOXO3O43524 673 aa8.24□□□□□ -1.09
SMCHD1-206ENST00000581631 MICAL2O94851 1124 aa8.24□□□□□ -1.09
SMCHD1-206ENST00000581631 KRT25Q7Z3Z0 450 aa8.24□□□□□ -1.09
SMCHD1-206ENST00000581631 EGFRP00533 1210 aa8.23□□□□□ -1.09
SMCHD1-206ENST00000581631 NRLP54845 237 aa8.23□□□□□ -1.09
SMCHD1-206ENST00000581631 IGF2-ASQ6U949 168 aa8.23□□□□□ -1.09
SMCHD1-206ENST00000581631 LRFN2Q9ULH4 789 aa8.23□□□□□ -1.09
SMCHD1-206ENST00000581631 DLL1O00548 723 aa8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 SASH3O75995 380 aa8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 RARAP10276 462 aa8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 IREB2P48200 963 aaKnown RBP8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 MLLT1Q03111 559 aaPredicted RBP8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 C11orf91Q3C1V1 193 aa8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 ELMSAN1Q6PJG2 1045 aa8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 WFDC8Q8IUA0 241 aa8.22□□□□□ -1.09
SMCHD1-206ENST00000581631 HOXD8P13378 290 aaPredicted RBP8.21□□□□□ -1.1
SMCHD1-206ENST00000581631 NBPF11Q86T75 865 aa8.21□□□□□ -1.1
SMCHD1-206ENST00000581631 SMG9Q9H0W8 520 aaKnown RBP8.21□□□□□ -1.1
SMCHD1-206ENST00000581631 RNF112Q9ULX5 631 aa8.21□□□□□ -1.1
SMCHD1-206ENST00000581631 DZIP1LQ8IYY4 767 aaKnown RBP8.2□□□□□ -1.1
SMCHD1-206ENST00000581631 TLR7Q9NYK1 1049 aaKnown RBP8.2□□□□□ -1.1
SMCHD1-206ENST00000581631 USP20Q9Y2K6 914 aa8.2□□□□□ -1.1
SMCHD1-206ENST00000581631 PRR23CQ6ZRP0 262 aa8.19□□□□□ -1.1
SMCHD1-206ENST00000581631 VRTNQ9H8Y1 702 aa8.19□□□□□ -1.1
SMCHD1-206ENST00000581631 RTCBQ9Y3I0 505 aaKnown RBP8.19□□□□□ -1.1
SMCHD1-206ENST00000581631 KCNMB2Q9Y691 235 aa8.19□□□□□ -1.1
SMCHD1-206ENST00000581631 A6NJR5 290 aa8.18□□□□□ -1.1
SMCHD1-206ENST00000581631 CFAP70Q5T0N1 1121 aa8.18□□□□□ -1.1
SMCHD1-206ENST00000581631 LCE3BQ5TA77 95 aa8.18□□□□□ -1.1
SMCHD1-206ENST00000581631 Q6ZS46 218 aa8.18□□□□□ -1.1
SMCHD1-206ENST00000581631 HFE2Q6ZVN8 426 aa8.18□□□□□ -1.1
SMCHD1-206ENST00000581631 CALR3Q96L12 384 aaKnown RBP8.18□□□□□ -1.1
SMCHD1-206ENST00000581631 LMOD1P29536 600 aaPredicted RBP8.17□□□□□ -1.1
SMCHD1-206ENST00000581631 KRTAP19-1Q8IUB9 90 aa8.17□□□□□ -1.1
SMCHD1-206ENST00000581631 EIF2AK2P19525 551 aaKnown RBP8.16□□□□□ -1.1
SMCHD1-206ENST00000581631 TMEM130Q8N3G9 435 aa8.16□□□□□ -1.1
SMCHD1-206ENST00000581631 PLD4Q96BZ4 506 aa8.16□□□□□ -1.1
SMCHD1-206ENST00000581631 F8W735 103 aaPredicted RBP8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 J3QW42 95 aa8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 MMP20O60882 483 aa8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 XYLBO75191 536 aa8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 SOX18P35713 384 aa8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 FKBP5Q13451 457 aaPredicted RBP8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 COX20Q5RI15 118 aa8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 TREML1Q86YW5 311 aa8.15□□□□□ -1.1
SMCHD1-206ENST00000581631 LOC102724428A0A0B4J2F2 783 aa8.14□□□□□ -1.11
SMCHD1-206ENST00000581631 SIK1P57059 783 aa8.14□□□□□ -1.11
SMCHD1-206ENST00000581631 SETDB1Q15047 1291 aa8.14□□□□□ -1.11
SMCHD1-206ENST00000581631 TRIP4Q15650 581 aaPredicted RBP8.14□□□□□ -1.11
SMCHD1-206ENST00000581631 MRPL18Q9H0U6 180 aaKnown RBP8.14□□□□□ -1.11
SMCHD1-206ENST00000581631 AKTIPQ9H8T0 292 aa8.14□□□□□ -1.11
SMCHD1-206ENST00000581631 ALX3O95076 343 aa8.13□□□□□ -1.11
SMCHD1-206ENST00000581631 ARID4AP29374 1257 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-206ENST00000581631 FAM26DQ5JW98 314 aa8.13□□□□□ -1.11
SMCHD1-206ENST00000581631 RGL4Q8IZJ4 473 aa8.13□□□□□ -1.11
SMCHD1-206ENST00000581631 SRA1Q9HD15 236 aaKnown RBP8.13□□□□□ -1.11
SMCHD1-206ENST00000581631 TM4SF5O14894 197 aa8.12□□□□□ -1.11
SMCHD1-206ENST00000581631 ETFBKMTQ8IXQ9 262 aa8.12□□□□□ -1.11
SMCHD1-206ENST00000581631 PSAPP07602 524 aa8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 FSTP19883 344 aa8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 OCLNQ16625 522 aa8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 SLC51AQ86UW1 340 aa8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 CMTR1Q8N1G2 835 aaKnown RBP8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 FAM200AQ8TCP9 573 aa8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 VTI1AQ96AJ9 217 aa8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 NSUN5Q96P11 429 aaKnown RBP8.11□□□□□ -1.11
SMCHD1-206ENST00000581631 MAP4K3Q8IVH8 894 aa8.1□□□□□ -1.11
SMCHD1-206ENST00000581631 IL22RA1Q8N6P7 574 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms