RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SSH1Q8WYL5 1049 aa24.77■■□□□ 1.56
SS18-209ENST00000578595 ZNF277Q9NRM2 450 aaPredicted RBP24.77■■□□□ 1.56
SS18-209ENST00000578595 SLC51AQ86UW1 340 aa24.76■■□□□ 1.55
SS18-209ENST00000578595 MRPL50Q8N5N7 158 aaKnown RBP24.76■■□□□ 1.55
SS18-209ENST00000578595 GCKRQ14397 625 aa24.75■■□□□ 1.55
SS18-209ENST00000578595 SF3B3Q15393 1217 aaKnown RBP24.75■■□□□ 1.55
SS18-209ENST00000578595 CCDC152Q4G0S7 254 aa24.75■■□□□ 1.55
SS18-209ENST00000578595 KDM2BQ8NHM5 1336 aa24.75■■□□□ 1.55
SS18-209ENST00000578595 CDHR2Q9BYE9 1310 aa24.75■■□□□ 1.55
SS18-209ENST00000578595 LRRC37AA6NMS7 1700 aa24.75■■□□□ 1.55
SS18-209ENST00000578595 BBOX1O75936 387 aa24.74■■□□□ 1.55
SS18-209ENST00000578595 TRMT2AQ8IZ69 625 aaKnown RBP24.74■■□□□ 1.55
SS18-209ENST00000578595 ATP6V0A2Q9Y487 856 aa24.74■■□□□ 1.55
SS18-209ENST00000578595 ZC3H4Q9UPT8 1303 aaKnown RBP24.74■■□□□ 1.55
SS18-209ENST00000578595 CELF1Q92879 486 aaKnown RBP24.73■■□□□ 1.55
SS18-209ENST00000578595 COL4A1P02462 1669 aa24.72■■□□□ 1.55
SS18-209ENST00000578595 IARSP41252 1262 aaKnown RBP24.72■■□□□ 1.55
SS18-209ENST00000578595 CTSWP56202 376 aa24.72■■□□□ 1.55
SS18-209ENST00000578595 ALDH1L2Q3SY69 923 aa24.72■■□□□ 1.55
SS18-209ENST00000578595 PTPRCP08575 1304 aa24.71■■□□□ 1.55
SS18-209ENST00000578595 CT47B1P0C2W7 299 aaPredicted RBP24.71■■□□□ 1.55
SS18-209ENST00000578595 GRIPAP1Q4V328 841 aa24.71■■□□□ 1.55
SS18-209ENST00000578595 PSMD1Q99460 953 aa24.71■■□□□ 1.55
SS18-209ENST00000578595 SEC31BQ9NQW1 1179 aa24.71■■□□□ 1.55
SS18-209ENST00000578595 BEND3Q5T5X7 828 aa24.7■■□□□ 1.54
SS18-209ENST00000578595 DPP8Q6V1X1 898 aaPredicted RBP24.7■■□□□ 1.54
SS18-209ENST00000578595 TMC4Q7Z404 712 aa24.7■■□□□ 1.54
SS18-209ENST00000578595 SP8Q8IXZ3 490 aa24.7■■□□□ 1.54
SS18-209ENST00000578595 SRCIN1Q9C0H9 1055 aa24.7■■□□□ 1.54
SS18-209ENST00000578595 NMRK2Q9NPI5 230 aa24.7■■□□□ 1.54
SS18-209ENST00000578595 H7C1W4 665 aa24.69■■□□□ 1.54
SS18-209ENST00000578595 DPY19L2Q6NUT2 758 aa24.69■■□□□ 1.54
SS18-209ENST00000578595 MPNDQ8N594 471 aa24.69■■□□□ 1.54
SS18-209ENST00000578595 C9orf78Q9NZ63 289 aaPredicted RBP24.69■■□□□ 1.54
SS18-209ENST00000578595 SNED1Q8TER0 1413 aa24.69■■□□□ 1.54
SS18-209ENST00000578595 LARGE2Q8N3Y3 721 aa24.68■■□□□ 1.54
SS18-209ENST00000578595 JDP2Q8WYK2 163 aa24.68■■□□□ 1.54
SS18-209ENST00000578595 PPIP5K2O43314 1243 aa24.67■■□□□ 1.54
SS18-209ENST00000578595 RPS8P62241 208 aaKnown RBP24.67■■□□□ 1.54
SS18-209ENST00000578595 C16orf71Q8IYS4 520 aaPredicted RBP24.67■■□□□ 1.54
SS18-209ENST00000578595 SUPT20HQ8NEM7 779 aa24.67■■□□□ 1.54
SS18-209ENST00000578595 CHMP3Q9Y3E7 222 aa24.67■■□□□ 1.54
SS18-209ENST00000578595 ZBED9Q6R2W3 1325 aa24.66■■□□□ 1.54
SS18-209ENST00000578595 GLTPD2A6NH11 291 aa24.66■■□□□ 1.54
SS18-209ENST00000578595 ALDH1L1O75891 902 aa24.66■■□□□ 1.54
SS18-209ENST00000578595 ANKRD18AQ8IVF6 992 aa24.66■■□□□ 1.54
SS18-209ENST00000578595 CDC5LQ99459 802 aaKnown RBP24.66■■□□□ 1.54
SS18-209ENST00000578595 NSFL1CQ9UNZ2 370 aaKnown RBP24.66■■□□□ 1.54
SS18-209ENST00000578595 GRM8O00222 908 aa24.65■■□□□ 1.54
SS18-209ENST00000578595 TTLL11Q8NHH1 800 aa24.65■■□□□ 1.54
SS18-209ENST00000578595 GREM2Q9H772 168 aa24.65■■□□□ 1.54
SS18-209ENST00000578595 RRAGCQ9HB90 399 aa24.65■■□□□ 1.54
SS18-209ENST00000578595 AOC3Q16853 763 aa24.64■■□□□ 1.54
SS18-209ENST00000578595 NIM1KQ8IY84 436 aa24.64■■□□□ 1.54
SS18-209ENST00000578595 C6orf229H3BNL8 230 aa24.63■■□□□ 1.53
SS18-209ENST00000578595 WDR90Q96KV7 1748 aa24.63■■□□□ 1.53
SS18-209ENST00000578595 DUOX1Q9NRD9 1551 aa24.63■■□□□ 1.53
SS18-209ENST00000578595 RARSP54136 660 aaKnown RBP24.62■■□□□ 1.53
SS18-209ENST00000578595 CASP7P55210 303 aa24.62■■□□□ 1.53
SS18-209ENST00000578595 FAM161AQ3B820 660 aa24.62■■□□□ 1.53
SS18-209ENST00000578595 ANKIB1Q9P2G1 1089 aa24.62■■□□□ 1.53
SS18-209ENST00000578595 NOB1Q9ULX3 412 aaKnown RBP24.62■■□□□ 1.53
SS18-209ENST00000578595 COL4A5P29400 1685 aa24.62■■□□□ 1.53
SS18-209ENST00000578595 KIF16BQ96L93 1317 aa24.61■■□□□ 1.53
SS18-209ENST00000578595 ZNF541Q9H0D2 1346 aa24.61■■□□□ 1.53
SS18-209ENST00000578595 LTBP1Q14766 1721 aa24.61■■□□□ 1.53
SS18-209ENST00000578595 KIF3CO14782 793 aa24.61■■□□□ 1.53
SS18-209ENST00000578595 DDNO94850 711 aaPredicted RBP24.61■■□□□ 1.53
SS18-209ENST00000578595 IGHMBP2P38935 993 aaKnown RBP24.61■■□□□ 1.53
SS18-209ENST00000578595 EIF6P56537 245 aaKnown RBP24.61■■□□□ 1.53
SS18-209ENST00000578595 PLA2G12BQ9BX93 195 aa24.61■■□□□ 1.53
SS18-209ENST00000578595 ITGA6P23229 1130 aa24.6■■□□□ 1.53
SS18-209ENST00000578595 C1QTNF8P60827 252 aa24.6■■□□□ 1.53
SS18-209ENST00000578595 GPSM2P81274 684 aa24.6■■□□□ 1.53
SS18-209ENST00000578595 SCN4AP35499 1836 aa24.6■■□□□ 1.53
SS18-209ENST00000578595 RTL9Q8NET4 1388 aa24.59■■□□□ 1.53
SS18-209ENST00000578595 FRAT1Q92837 279 aaPredicted RBP24.59■■□□□ 1.53
SS18-209ENST00000578595 API5Q9BZZ5 524 aaKnown RBP24.59■■□□□ 1.53
SS18-209ENST00000578595 GJA3Q9Y6H8 435 aa24.59■■□□□ 1.53
SS18-209ENST00000578595 MPHOSPH8Q99549 860 aa24.58■■□□□ 1.53
SS18-209ENST00000578595 RTFDC1Q9BY42 306 aaPredicted RBP24.58■■□□□ 1.53
SS18-209ENST00000578595 A0A1B0GUL6 1792 aa24.57■■□□□ 1.52
SS18-209ENST00000578595 ANKRD18BA2A2Z9 1011 aa24.57■■□□□ 1.52
SS18-209ENST00000578595 RIMBP2O15034 1052 aa24.57■■□□□ 1.52
SS18-209ENST00000578595 UFL1O94874 794 aa24.57■■□□□ 1.52
SS18-209ENST00000578595 VEGFAP15692 232 aaPredicted RBP24.57■■□□□ 1.52
SS18-209ENST00000578595 TAF7LQ5H9L4 462 aa24.57■■□□□ 1.52
SS18-209ENST00000578595 EYA3Q99504 573 aa24.57■■□□□ 1.52
SS18-209ENST00000578595 G3V3G9 751 aa24.56■■□□□ 1.52
SS18-209ENST00000578595 IFIT5Q13325 482 aaKnown RBP24.56■■□□□ 1.52
SS18-209ENST00000578595 WASHC4Q2M389 1173 aa24.56■■□□□ 1.52
SS18-209ENST00000578595 DCAF8Q5TAQ9 597 aa24.56■■□□□ 1.52
SS18-209ENST00000578595 LMBR1LQ6UX01 489 aa24.56■■□□□ 1.52
SS18-209ENST00000578595 SUCLG2Q96I99 432 aa24.56■■□□□ 1.52
SS18-209ENST00000578595 GPR101Q96P66 508 aaPredicted RBP24.56■■□□□ 1.52
SS18-209ENST00000578595 GGA1Q9UJY5 639 aa24.56■■□□□ 1.52
SS18-209ENST00000578595 FZD9O00144 591 aa24.55■■□□□ 1.52
SS18-209ENST00000578595 NBPF7P0C2Y1 421 aaPredicted RBP24.55■■□□□ 1.52
SS18-209ENST00000578595 FOXO4P98177 505 aa24.55■■□□□ 1.52
SS18-209ENST00000578595 KIAA2012Q0VF49 1180 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms