RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 POLIQ9UNA4 740 aa9.89□□□□□ -0.83
NUP88-213ENST00000576862 ADARB2-AS1A8MUL3 147 aa9.88□□□□□ -0.83
NUP88-213ENST00000576862 GGNBP2Q9H3C7 697 aa9.88□□□□□ -0.83
NUP88-213ENST00000576862 UBAP1LF5GYI3 381 aa9.87□□□□□ -0.83
NUP88-213ENST00000576862 MAP3K6O95382 1288 aa9.87□□□□□ -0.83
NUP88-213ENST00000576862 RARAP10276 462 aa9.87□□□□□ -0.83
NUP88-213ENST00000576862 MAP3K10Q02779 954 aa9.87□□□□□ -0.83
NUP88-213ENST00000576862 AEBP1Q8IUX7 1158 aa9.87□□□□□ -0.83
NUP88-213ENST00000576862 ELOA3CA0A087WX78 387 aaPredicted RBP9.86□□□□□ -0.83
NUP88-213ENST00000576862 ELOA3DA6NLF2 546 aaPredicted RBP9.86□□□□□ -0.83
NUP88-213ENST00000576862 AAMPQ13685 434 aa9.86□□□□□ -0.83
NUP88-213ENST00000576862 ELOA3BQ3SY89 546 aa9.86□□□□□ -0.83
NUP88-213ENST00000576862 ELOA3Q8NG57 546 aa9.86□□□□□ -0.83
NUP88-213ENST00000576862 A6NHS1 94 aa9.85□□□□□ -0.83
NUP88-213ENST00000576862 NLRP13Q86W25 1043 aa9.85□□□□□ -0.83
NUP88-213ENST00000576862 BTBD6Q96KE9 485 aa9.85□□□□□ -0.83
NUP88-213ENST00000576862 FNDC3AQ9Y2H6 1198 aaKnown RBP9.85□□□□□ -0.83
NUP88-213ENST00000576862 ZBTB42B2RXF5 422 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 MMP20O60882 483 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 HOXB4P17483 251 aaPredicted RBP9.84□□□□□ -0.83
NUP88-213ENST00000576862 ADH7P40394 386 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 DHX32Q7L7V1 743 aaKnown RBP9.84□□□□□ -0.83
NUP88-213ENST00000576862 HOMEZQ8IX15 550 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 GJD3Q8N144 294 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 KCTD17Q8N5Z5 321 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 UBE2OQ9C0C9 1292 aaKnown RBP9.84□□□□□ -0.83
NUP88-213ENST00000576862 STK17AQ9UEE5 414 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 ADAMTS8Q9UP79 889 aa9.84□□□□□ -0.83
NUP88-213ENST00000576862 PATL2C9JE40 543 aaKnown RBP9.83□□□□□ -0.84
NUP88-213ENST00000576862 XKR5Q6UX68 686 aa9.83□□□□□ -0.84
NUP88-213ENST00000576862 IGFLR1Q9H665 355 aa9.83□□□□□ -0.84
NUP88-213ENST00000576862 ENAMQ9NRM1 1142 aa9.83□□□□□ -0.84
NUP88-213ENST00000576862 DNAJB12Q9NXW2 375 aaKnown RBP9.83□□□□□ -0.84
NUP88-213ENST00000576862 TLR7Q9NYK1 1049 aaKnown RBP9.83□□□□□ -0.84
NUP88-213ENST00000576862 TMEM63CQ9P1W3 806 aa9.83□□□□□ -0.84
NUP88-213ENST00000576862 RPLP1P05386 114 aaKnown RBP9.82□□□□□ -0.84
NUP88-213ENST00000576862 TBC1D8BQ0IIM8 1120 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 C8orf34Q49A92 452 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 PDE12Q6L8Q7 609 aaKnown RBP9.82□□□□□ -0.84
NUP88-213ENST00000576862 CHSY3Q70JA7 882 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 NEDD1Q8NHV4 660 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 TRPM4Q8TD43 1214 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 ELP3Q9H9T3 547 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 SLC6A14Q9UN76 642 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 STARD13Q9Y3M8 1113 aa9.82□□□□□ -0.84
NUP88-213ENST00000576862 PCSK2P16519 638 aa9.81□□□□□ -0.84
NUP88-213ENST00000576862 USP5P45974 858 aa9.8□□□□□ -0.84
NUP88-213ENST00000576862 ZNF438Q7Z4V0 828 aa9.8□□□□□ -0.84
NUP88-213ENST00000576862 OR13H1Q8NG92 308 aa9.8□□□□□ -0.84
NUP88-213ENST00000576862 BIN2Q9UBW5 565 aaPredicted RBP9.8□□□□□ -0.84
NUP88-213ENST00000576862 NAGPAQ9UK23 515 aa9.8□□□□□ -0.84
NUP88-213ENST00000576862 BRPF3Q9ULD4 1205 aa9.8□□□□□ -0.84
NUP88-213ENST00000576862 HOXD8P13378 290 aaPredicted RBP9.79□□□□□ -0.84
NUP88-213ENST00000576862 ALAS2P22557 587 aa9.79□□□□□ -0.84
NUP88-213ENST00000576862 SOX18P35713 384 aa9.79□□□□□ -0.84
NUP88-213ENST00000576862 SNRPNP63162 240 aaKnown RBP9.79□□□□□ -0.84
NUP88-213ENST00000576862 GPLD1P80108 840 aa9.79□□□□□ -0.84
NUP88-213ENST00000576862 MLLT1Q03111 559 aaPredicted RBP9.79□□□□□ -0.84
NUP88-213ENST00000576862 ABI2Q9NYB9 513 aaPredicted RBP9.79□□□□□ -0.84
NUP88-213ENST00000576862 CNTN3Q9P232 1028 aa9.79□□□□□ -0.84
NUP88-213ENST00000576862 FAM181BA6NEQ2 426 aa9.78□□□□□ -0.84
NUP88-213ENST00000576862 NDUFB5O43674 189 aa9.78□□□□□ -0.84
NUP88-213ENST00000576862 IGHA2P01877 340 aa9.78□□□□□ -0.84
NUP88-213ENST00000576862 AMPD1P23109 780 aa9.78□□□□□ -0.84
NUP88-213ENST00000576862 NRLP54845 237 aa9.78□□□□□ -0.84
NUP88-213ENST00000576862 ALBP02768 609 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 CYP2E1P05181 493 aaPredicted RBP9.77□□□□□ -0.85
NUP88-213ENST00000576862 PSAPP07602 524 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 DGKGP49619 791 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 PLAURQ03405 335 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 EHHADHQ08426 723 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 COL13A1Q5TAT6 717 aaPredicted RBP9.77□□□□□ -0.85
NUP88-213ENST00000576862 TTC39BQ5VTQ0 682 aaPredicted RBP9.77□□□□□ -0.85
NUP88-213ENST00000576862 C20orf204Q6ZNR8 217 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 FAM129BQ96TA1 746 aa9.77□□□□□ -0.85
NUP88-213ENST00000576862 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.77□□□□□ -0.85
NUP88-213ENST00000576862 LINC00114Q6XXX2 140 aa9.76□□□□□ -0.85
NUP88-213ENST00000576862 HFE2Q6ZVN8 426 aa9.76□□□□□ -0.85
NUP88-213ENST00000576862 FAM35AQ86V20 835 aa9.76□□□□□ -0.85
NUP88-213ENST00000576862 C1orf127Q8N9H9 656 aa9.76□□□□□ -0.85
NUP88-213ENST00000576862 TTC16Q8NEE8 873 aa9.76□□□□□ -0.85
NUP88-213ENST00000576862 NSUN5Q96P11 429 aaKnown RBP9.76□□□□□ -0.85
NUP88-213ENST00000576862 CHRDQ9H2X0 955 aa9.76□□□□□ -0.85
NUP88-213ENST00000576862 TNFRSF21O75509 655 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 CPB1P15086 417 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 PCSK7Q16549 785 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 KANK3Q6NY19 840 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 C8orf86Q6ZUL3 223 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 MICALL1Q8N3F8 863 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 CITED4Q96RK1 184 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 RBCK1Q9BYM8 510 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 RRAGCQ9HB90 399 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 FOXD3Q9UJU5 478 aaPredicted RBP9.75□□□□□ -0.85
NUP88-213ENST00000576862 CNTNAP5Q8WYK1 1306 aa9.75□□□□□ -0.85
NUP88-213ENST00000576862 LOC102724428A0A0B4J2F2 783 aa9.74□□□□□ -0.85
NUP88-213ENST00000576862 J3QW42 95 aa9.74□□□□□ -0.85
NUP88-213ENST00000576862 MARSP56192 900 aaKnown RBP9.74□□□□□ -0.85
NUP88-213ENST00000576862 SIK1P57059 783 aa9.74□□□□□ -0.85
NUP88-213ENST00000576862 COL9A3Q14050 684 aaPredicted RBP9.74□□□□□ -0.85
NUP88-213ENST00000576862 PERM1Q5SV97 790 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms