RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 NPR1P16066 1061 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 FAM161AQ3B820 660 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 SLC10A5Q5PT55 438 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 STYK1Q6J9G0 422 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 RPGRQ92834 1020 aaKnown RBP10.03□□□□□ -0.8
CCDC40-215ENST00000576033 SRCIN1Q9C0H9 1055 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 GREM2Q9H772 168 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 KIF16BQ96L93 1317 aa10.03□□□□□ -0.8
CCDC40-215ENST00000576033 GRM8O00222 908 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 PPEF1O14829 653 aaPredicted RBP10.02□□□□□ -0.81
CCDC40-215ENST00000576033 CTSWP56202 376 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 FOXO4P98177 505 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 C20orf194Q5TEA3 1177 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 TMEM57Q8N5G2 664 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 TTLL6Q8N841 843 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 PANK1Q8TE04 598 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 C7orf43Q8WVR3 580 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 GPR101Q96P66 508 aaPredicted RBP10.02□□□□□ -0.81
CCDC40-215ENST00000576033 MEIS3Q99687 375 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 CHMP4AQ9BY43 222 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 SUPT16HQ9Y5B9 1047 aaKnown RBP10.02□□□□□ -0.81
CCDC40-215ENST00000576033 CDHR2Q9BYE9 1310 aa10.02□□□□□ -0.81
CCDC40-215ENST00000576033 WTIPA6NIX2 430 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-215ENST00000576033 BRPF1P55201 1214 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-215ENST00000576033 ATF7IPQ6VMQ6 1270 aa10.01□□□□□ -0.81
CCDC40-215ENST00000576033 ARHGAP27Q6ZUM4 889 aa10.01□□□□□ -0.81
CCDC40-215ENST00000576033 NLRP3Q96P20 1036 aa10.01□□□□□ -0.81
CCDC40-215ENST00000576033 RCAN3Q9UKA8 241 aa10.01□□□□□ -0.81
CCDC40-215ENST00000576033 DICER1Q9UPY3 1922 aaKnown RBP10.01□□□□□ -0.81
CCDC40-215ENST00000576033 PDE8AO60658 829 aa10□□□□□ -0.81
CCDC40-215ENST00000576033 HOXA10P31260 410 aaPredicted RBP10□□□□□ -0.81
CCDC40-215ENST00000576033 ANKRD44Q8N8A2 993 aa10□□□□□ -0.81
CCDC40-215ENST00000576033 RBM17Q96I25 401 aaKnown RBP10□□□□□ -0.81
CCDC40-215ENST00000576033 ZNF594Q96JF6 807 aaPredicted RBP10□□□□□ -0.81
CCDC40-215ENST00000576033 USP44Q9H0E7 712 aa10□□□□□ -0.81
CCDC40-215ENST00000576033 BICC1Q9H694 974 aaKnown RBP10□□□□□ -0.81
CCDC40-215ENST00000576033 C1orf115Q9H7X2 142 aa10□□□□□ -0.81
CCDC40-215ENST00000576033 ZNF646O15015 1829 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-215ENST00000576033 ALDH1L1O75891 902 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 GRAPQ13588 217 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 SF3B3Q15393 1217 aaKnown RBP9.99□□□□□ -0.81
CCDC40-215ENST00000576033 ZKSCAN2Q63HK3 967 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 TTLL11Q8NHH1 800 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 KLHDC4Q8TBB5 520 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 GRAPLQ8TC17 118 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-215ENST00000576033 CNKSR1Q969H4 720 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 API5Q9BZZ5 524 aaKnown RBP9.99□□□□□ -0.81
CCDC40-215ENST00000576033 C9orf78Q9NZ63 289 aaPredicted RBP9.99□□□□□ -0.81
CCDC40-215ENST00000576033 CHMP3Q9Y3E7 222 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 UTYO14607 1347 aa9.99□□□□□ -0.81
CCDC40-215ENST00000576033 ITGA6P23229 1130 aa9.98□□□□□ -0.81
CCDC40-215ENST00000576033 LMBR1LQ6UX01 489 aa9.98□□□□□ -0.81
CCDC40-215ENST00000576033 DDX46Q7L014 1031 aaKnown RBP9.98□□□□□ -0.81
CCDC40-215ENST00000576033 CRAMP1Q96RY5 1269 aa9.98□□□□□ -0.81
CCDC40-215ENST00000576033 ZNF277Q9NRM2 450 aaPredicted RBP9.98□□□□□ -0.81
CCDC40-215ENST00000576033 LRRFIP2Q9Y608 721 aaKnown RBP9.98□□□□□ -0.81
CCDC40-215ENST00000576033 SNAP23O00161 211 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 CCT4P50991 539 aaKnown RBP9.97□□□□□ -0.81
CCDC40-215ENST00000576033 GPSM2P81274 684 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 CCDC152Q4G0S7 254 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 CCDC93Q567U6 631 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 C9orf131Q5VYM1 1079 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 ERICH6BQ5W0A0 696 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 INTS3Q68E01 1043 aaKnown RBP9.97□□□□□ -0.81
CCDC40-215ENST00000576033 ITPRIPQ8IWB1 547 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 PLA2G12BQ9BX93 195 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 SCN9AQ15858 1988 aa9.97□□□□□ -0.81
CCDC40-215ENST00000576033 CSF1RP07333 972 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 KLRK1P26718 216 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 FTSJ3Q8IY81 847 aaKnown RBP9.96□□□□□ -0.82
CCDC40-215ENST00000576033 DZIP1LQ8IYY4 767 aaKnown RBP9.96□□□□□ -0.82
CCDC40-215ENST00000576033 ZNF526Q8TF50 670 aaPredicted RBP9.96□□□□□ -0.82
CCDC40-215ENST00000576033 ARHGAP45Q92619 1136 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 PUS3Q9BZE2 481 aaKnown RBP9.96□□□□□ -0.82
CCDC40-215ENST00000576033 RNF181Q9P0P0 153 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 COG6Q9Y2V7 657 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 ATP6V0A2Q9Y487 856 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 RTL9Q8NET4 1388 aa9.96□□□□□ -0.82
CCDC40-215ENST00000576033 GRIN3BO60391 1043 aa9.95□□□□□ -0.82
CCDC40-215ENST00000576033 UBTFL1P0CB47 393 aaPredicted RBP9.95□□□□□ -0.82
CCDC40-215ENST00000576033 ALDH1B1P30837 517 aa9.95□□□□□ -0.82
CCDC40-215ENST00000576033 AOC3Q16853 763 aa9.95□□□□□ -0.82
CCDC40-215ENST00000576033 TAOK3Q9H2K8 898 aa9.95□□□□□ -0.82
CCDC40-215ENST00000576033 PDZRN3Q9UPQ7 1066 aa9.95□□□□□ -0.82
CCDC40-215ENST00000576033 PA2G4Q9UQ80 394 aaKnown RBP9.95□□□□□ -0.82
CCDC40-215ENST00000576033 ZNF541Q9H0D2 1346 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 DCAF8L1A6NGE4 600 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 IPO8O15397 1037 aaKnown RBP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 NEFLP07196 543 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 YY1P25490 414 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 RFX5P48382 616 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 RRP1P56182 461 aaKnown RBP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 RPS8P62241 208 aaKnown RBP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 FKBP4Q02790 459 aaKnown RBP eCLIP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 RABL6Q3YEC7 729 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 LRRC24Q50LG9 513 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 ANKRD18AQ8IVF6 992 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 HELBQ8NG08 1087 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-215ENST00000576033 POLLQ9UGP5 575 aa9.94□□□□□ -0.82
CCDC40-215ENST00000576033 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms