RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RIC3Q7Z5B4 369 aa23.46■■□□□ 1.35
CHD3-214ENST00000572579 MPNDQ8N594 471 aa23.46■■□□□ 1.35
CHD3-214ENST00000572579 JARID2Q92833 1246 aaPredicted RBP23.46■■□□□ 1.35
CHD3-214ENST00000572579 LTBP1Q14766 1721 aa23.45■■□□□ 1.34
CHD3-214ENST00000572579 IRS4O14654 1257 aaPredicted RBP23.45■■□□□ 1.34
CHD3-214ENST00000572579 CCDC27Q2M243 656 aa23.45■■□□□ 1.34
CHD3-214ENST00000572579 NIM1KQ8IY84 436 aa23.45■■□□□ 1.34
CHD3-214ENST00000572579 VPS33BQ9H267 617 aa23.45■■□□□ 1.34
CHD3-214ENST00000572579 SCN4AP35499 1836 aa23.45■■□□□ 1.34
CHD3-214ENST00000572579 KIAA2012Q0VF49 1180 aa23.44■■□□□ 1.34
CHD3-214ENST00000572579 CNTROBQ8N137 903 aa23.44■■□□□ 1.34
CHD3-214ENST00000572579 MYD88Q99836 296 aa23.44■■□□□ 1.34
CHD3-214ENST00000572579 MKRN1Q9UHC7 482 aaKnown RBP23.44■■□□□ 1.34
CHD3-214ENST00000572579 ZNRF3Q9ULT6 936 aa23.44■■□□□ 1.34
CHD3-214ENST00000572579 CLEC11AQ9Y240 323 aa23.44■■□□□ 1.34
CHD3-214ENST00000572579 ADAMTSL1Q8N6G6 1762 aa23.44■■□□□ 1.34
CHD3-214ENST00000572579 LAMB2P55268 1798 aa23.43■■□□□ 1.34
CHD3-214ENST00000572579 ZNF316A6NFI3 1004 aaPredicted RBP23.43■■□□□ 1.34
CHD3-214ENST00000572579 YDJCA8MPS7 323 aa23.43■■□□□ 1.34
CHD3-214ENST00000572579 ZEB1P37275 1124 aaPredicted RBP23.43■■□□□ 1.34
CHD3-214ENST00000572579 FMR1Q06787 632 aaKnown RBP eCLIP23.43■■□□□ 1.345e-7■□□□□ 11.2
CHD3-214ENST00000572579 PNMA8AQ86V59 439 aaPredicted RBP23.43■■□□□ 1.34
CHD3-214ENST00000572579 ZBTB38Q8NAP3 1195 aaPredicted RBP23.43■■□□□ 1.34
CHD3-214ENST00000572579 GOLGA2Q08379 1002 aa23.42■■□□□ 1.34
CHD3-214ENST00000572579 COL13A1Q5TAT6 717 aaPredicted RBP23.42■■□□□ 1.34
CHD3-214ENST00000572579 SEC31BQ9NQW1 1179 aa23.42■■□□□ 1.34
CHD3-214ENST00000572579 TAF1P21675 1872 aa23.42■■□□□ 1.34
CHD3-214ENST00000572579 CCDC30Q5VVM6 783 aa23.41■■□□□ 1.34
CHD3-214ENST00000572579 G2E3Q7L622 706 aa23.41■■□□□ 1.34
CHD3-214ENST00000572579 SUPT20HQ8NEM7 779 aa23.41■■□□□ 1.34
CHD3-214ENST00000572579 METTL22Q9BUU2 404 aaPredicted RBP23.41■■□□□ 1.34
CHD3-214ENST00000572579 TMX4Q9H1E5 349 aaPredicted RBP23.41■■□□□ 1.34
CHD3-214ENST00000572579 POLLQ9UGP5 575 aa23.41■■□□□ 1.34
CHD3-214ENST00000572579 DUOX1Q9NRD9 1551 aa23.4■■□□□ 1.34
CHD3-214ENST00000572579 GPSM2P81274 684 aa23.4■■□□□ 1.34
CHD3-214ENST00000572579 MRS2Q9HD23 443 aa23.4■■□□□ 1.34
CHD3-214ENST00000572579 GPRC5DQ9NZD1 345 aa23.4■■□□□ 1.34
CHD3-214ENST00000572579 DDX60Q8IY21 1712 aaKnown RBP23.39■■□□□ 1.34
CHD3-214ENST00000572579 RAD17O75943 681 aa23.39■■□□□ 1.33
CHD3-214ENST00000572579 IGKV5-2P06315 115 aa23.39■■□□□ 1.33
CHD3-214ENST00000572579 CCDC191Q8NCU4 936 aa23.39■■□□□ 1.33
CHD3-214ENST00000572579 MAP3K2Q9Y2U5 619 aa23.39■■□□□ 1.33
CHD3-214ENST00000572579 SHTN1A0MZ66 631 aa23.38■■□□□ 1.33
CHD3-214ENST00000572579 TMEM88BA6NKF7 163 aa23.38■■□□□ 1.33
CHD3-214ENST00000572579 PCCAP05165 728 aaPredicted RBP23.38■■□□□ 1.33
CHD3-214ENST00000572579 GMPSP49915 693 aaPredicted RBP23.38■■□□□ 1.33
CHD3-214ENST00000572579 RPS8P62241 208 aaKnown RBP23.38■■□□□ 1.33
CHD3-214ENST00000572579 TMC4Q7Z404 712 aa23.38■■□□□ 1.33
CHD3-214ENST00000572579 PI4KAP2A4QPH2 592 aa23.37■■□□□ 1.33
CHD3-214ENST00000572579 HSPA1AP0DMV8 641 aaKnown RBP23.37■■□□□ 1.33
CHD3-214ENST00000572579 HSPA1BP0DMV9 641 aaKnown RBP23.37■■□□□ 1.33
CHD3-214ENST00000572579 LMOD1P29536 600 aaPredicted RBP23.37■■□□□ 1.33
CHD3-214ENST00000572579 PI4KAP1Q8N8J0 262 aa23.37■■□□□ 1.33
CHD3-214ENST00000572579 GPR101Q96P66 508 aaPredicted RBP23.37■■□□□ 1.33
CHD3-214ENST00000572579 KCNQ5Q9NR82 932 aa23.37■■□□□ 1.33
CHD3-214ENST00000572579 NSFL1CQ9UNZ2 370 aaKnown RBP23.37■■□□□ 1.33
CHD3-214ENST00000572579 CNTNAP1P78357 1384 aa23.37■■□□□ 1.33
CHD3-214ENST00000572579 HIRAP54198 1017 aaPredicted RBP23.36■■□□□ 1.33
CHD3-214ENST00000572579 NCBP3Q53F19 620 aaKnown RBP23.36■■□□□ 1.33
CHD3-214ENST00000572579 KSR2Q6VAB6 950 aa23.36■■□□□ 1.33
CHD3-214ENST00000572579 USP50Q70EL3 339 aaPredicted RBP23.36■■□□□ 1.33
CHD3-214ENST00000572579 CWC25Q9NXE8 425 aaPredicted RBP23.36■■□□□ 1.33
CHD3-214ENST00000572579 VEGFBP49765 207 aa23.35■■□□□ 1.33
CHD3-214ENST00000572579 TWISTNBQ3B726 338 aaPredicted RBP23.35■■□□□ 1.33
CHD3-214ENST00000572579 CIAPIN1Q6FI81 312 aa23.35■■□□□ 1.33
CHD3-214ENST00000572579 CCDC85AQ96PX6 553 aaPredicted RBP23.35■■□□□ 1.33
CHD3-214ENST00000572579 SPINK5Q9NQ38 1064 aaPredicted RBP23.35■■□□□ 1.33
CHD3-214ENST00000572579 SALL2Q9Y467 1007 aaPredicted RBP23.35■■□□□ 1.33
CHD3-214ENST00000572579 IL16Q14005 1332 aa23.34■■□□□ 1.33
CHD3-214ENST00000572579 TRAF5O00463 557 aa23.34■■□□□ 1.33
CHD3-214ENST00000572579 TBC1D16Q8TBP0 767 aa23.34■■□□□ 1.33
CHD3-214ENST00000572579 RIMBP2O15034 1052 aa23.33■■□□□ 1.33
CHD3-214ENST00000572579 ANP32CO43423 234 aa23.33■■□□□ 1.33
CHD3-214ENST00000572579 PDE8AO60658 829 aa23.33■■□□□ 1.33
CHD3-214ENST00000572579 WASHC4Q2M389 1173 aa23.33■■□□□ 1.33
CHD3-214ENST00000572579 CST9Q5W186 159 aa23.33■■□□□ 1.33
CHD3-214ENST00000572579 DBNDD1Q9H9R9 158 aa23.33■■□□□ 1.33
CHD3-214ENST00000572579 ADARB2Q9NS39 739 aaKnown RBP23.33■■□□□ 1.33
CHD3-214ENST00000572579 ZBTB12Q9Y330 459 aaPredicted RBP23.33■■□□□ 1.33
CHD3-214ENST00000572579 WTIPA6NIX2 430 aaPredicted RBP23.32■■□□□ 1.32
CHD3-214ENST00000572579 DDX58O95786 925 aaKnown RBP23.32■■□□□ 1.32
CHD3-214ENST00000572579 SLC4A2P04920 1241 aa23.32■■□□□ 1.32
CHD3-214ENST00000572579 CWF19L2Q2TBE0 894 aaKnown RBP23.32■■□□□ 1.32
CHD3-214ENST00000572579 FANCIQ9NVI1 1328 aa23.32■■□□□ 1.32
CHD3-214ENST00000572579 LRRC37AA6NMS7 1700 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 C6orf229H3BNL8 230 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 VAMP4O75379 141 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 DOK7Q18PE1 504 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 TRPM4Q8TD43 1214 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 PODXL2Q9NZ53 605 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 PGAP2Q9UHJ9 254 aa23.31■■□□□ 1.32
CHD3-214ENST00000572579 RTL9Q8NET4 1388 aa23.3■■□□□ 1.32
CHD3-214ENST00000572579 RASSF10A6NK89 507 aa23.3■■□□□ 1.32
CHD3-214ENST00000572579 PSMD14O00487 310 aa23.3■■□□□ 1.32
CHD3-214ENST00000572579 TNIP1Q15025 636 aa23.3■■□□□ 1.32
CHD3-214ENST00000572579 CDHR2Q9BYE9 1310 aa23.3■■□□□ 1.32
CHD3-214ENST00000572579 NEURL1BA8MQ27 555 aa23.29■■□□□ 1.32
CHD3-214ENST00000572579 CCDC152Q4G0S7 254 aa23.29■■□□□ 1.32
CHD3-214ENST00000572579 TTLL11Q8NHH1 800 aa23.29■■□□□ 1.32
CHD3-214ENST00000572579 CNOT7Q9UIV1 285 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms