RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 ROCK2O75116 1388 aaKnown RBP9.7□□□□□ -0.86
CHD3-213ENST00000571249 RAD17O75943 681 aa9.69□□□□□ -0.86
CHD3-213ENST00000571249 SLC4A8Q2Y0W8 1093 aa9.69□□□□□ -0.86
CHD3-213ENST00000571249 ZNF530Q6P9A1 599 aaPredicted RBP9.69□□□□□ -0.86
CHD3-213ENST00000571249 ANKRD13DQ6ZTN6 518 aa9.69□□□□□ -0.86
CHD3-213ENST00000571249 ZNF333Q96JL9 665 aa9.69□□□□□ -0.86
CHD3-213ENST00000571249 SNX27Q96L92 541 aa9.69□□□□□ -0.86
CHD3-213ENST00000571249 ANKRD26Q9UPS8 1709 aa9.69□□□□□ -0.86
CHD3-213ENST00000571249 A0A087WZG4 1122 aa9.68□□□□□ -0.86
CHD3-213ENST00000571249 PPIP5K2O43314 1243 aa9.68□□□□□ -0.86
CHD3-213ENST00000571249 ALDH1B1P30837 517 aa9.68□□□□□ -0.86
CHD3-213ENST00000571249 TBC1D10BQ4KMP7 808 aaPredicted RBP9.68□□□□□ -0.86
CHD3-213ENST00000571249 NBPF5PQ86XG9 351 aaPredicted RBP9.68□□□□□ -0.86
CHD3-213ENST00000571249 MICALL2Q8IY33 904 aa9.68□□□□□ -0.86
CHD3-213ENST00000571249 STAP2Q9UGK3 403 aa9.68□□□□□ -0.86
CHD3-213ENST00000571249 LAMB4A4D0S4 1761 aa9.68□□□□□ -0.86
CHD3-213ENST00000571249 KIF24Q5T7B8 1368 aa9.67□□□□□ -0.86
CHD3-213ENST00000571249 CAMTA2O94983 1202 aa9.67□□□□□ -0.86
CHD3-213ENST00000571249 RBM26Q5T8P6 1007 aaKnown RBP9.67□□□□□ -0.86
CHD3-213ENST00000571249 HOMEZQ8IX15 550 aa9.67□□□□□ -0.86
CHD3-213ENST00000571249 ZNRF3Q9ULT6 936 aa9.67□□□□□ -0.86
CHD3-213ENST00000571249 ZBTB12Q9Y330 459 aaPredicted RBP9.67□□□□□ -0.86
CHD3-213ENST00000571249 ASTN2O75129 1339 aaPredicted RBP9.66□□□□□ -0.86
CHD3-213ENST00000571249 A0A1W2PPC1 479 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 FAM177BA6PVY3 158 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 UBE2Q2LH0YL09 131 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 H7C1D1 291 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 ZBTB7BO15156 539 aaPredicted RBP9.66□□□□□ -0.86
CHD3-213ENST00000571249 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
CHD3-213ENST00000571249 CD99L2Q8TCZ2 262 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 L3MBTL2Q969R5 705 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 CDCA5Q96FF9 252 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 CFHR5Q9BXR6 569 aa9.66□□□□□ -0.86
CHD3-213ENST00000571249 PLEKHO1Q53GL0 409 aaPredicted RBP9.65□□□□□ -0.86
CHD3-213ENST00000571249 GPR153Q6NV75 609 aa9.65□□□□□ -0.86
CHD3-213ENST00000571249 DCPSQ96C86 337 aaKnown RBP9.65□□□□□ -0.86
CHD3-213ENST00000571249 PUS7Q96PZ0 661 aaKnown RBP9.65□□□□□ -0.86
CHD3-213ENST00000571249 WASHC2AQ641Q2 1341 aa9.64□□□□□ -0.87
CHD3-213ENST00000571249 EFCC1Q9HA90 598 aa9.64□□□□□ -0.87
CHD3-213ENST00000571249 LGR6Q9HBX8 967 aa9.64□□□□□ -0.87
CHD3-213ENST00000571249 MRC1P22897 1456 aa9.64□□□□□ -0.87
CHD3-213ENST00000571249 TMEM265A0A087WTH1 108 aa9.63□□□□□ -0.87
CHD3-213ENST00000571249 PRAMEF22A3QJZ6 481 aa9.63□□□□□ -0.87
CHD3-213ENST00000571249 EIF4A2Q14240 407 aaKnown RBP9.63□□□□□ -0.87
CHD3-213ENST00000571249 CC2D2BQ6DHV5 1058 aa9.63□□□□□ -0.87
CHD3-213ENST00000571249 SHISA4Q96DD7 197 aa9.63□□□□□ -0.87
CHD3-213ENST00000571249 SCAF8Q9UPN6 1271 aaKnown RBP9.63□□□□□ -0.87
CHD3-213ENST00000571249 CDHR2Q9BYE9 1310 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 BDP1A6H8Y1 2624 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 YDJCA8MPS7 323 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 A1BGP04217 495 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 MAP3K12Q12852 859 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 C1orf141Q5JVX7 400 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 GUCD1Q96NT3 240 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 PTCH2Q9Y6C5 1203 aa9.62□□□□□ -0.87
CHD3-213ENST00000571249 RPTORQ8N122 1335 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 STARD3NLO95772 234 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 TNIP1Q15025 636 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 TMEM132AQ24JP5 1023 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 SLC9C1Q4G0N8 1177 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 PRAMEF18Q5VWM3 479 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 TPTE2Q6XPS3 522 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 SULF1Q8IWU6 871 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 SH3TC2Q8TF17 1288 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 SLC52A2Q9HAB3 445 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 GGA3Q9NZ52 723 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 NR2E3Q9Y5X4 410 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 SCN7AQ01118 1682 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 NCOR1O75376 2440 aa9.61□□□□□ -0.87
CHD3-213ENST00000571249 TNNT2P45379 298 aaPredicted RBP9.6□□□□□ -0.87
CHD3-213ENST00000571249 PIP4K2AP48426 406 aaPredicted RBP9.6□□□□□ -0.87
CHD3-213ENST00000571249 BCAMP50895 628 aa9.6□□□□□ -0.87
CHD3-213ENST00000571249 UBE2Q1Q7Z7E8 422 aa9.6□□□□□ -0.87
CHD3-213ENST00000571249 NBPF11Q86T75 865 aa9.6□□□□□ -0.87
CHD3-213ENST00000571249 ERO1AQ96HE7 468 aa9.6□□□□□ -0.87
CHD3-213ENST00000571249 CDH23Q9H251 3354 aa9.6□□□□□ -0.87
CHD3-213ENST00000571249 TNFRSF10AO00220 468 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 RGL2O15211 777 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 IL6STP40189 918 aaPredicted RBP9.59□□□□□ -0.87
CHD3-213ENST00000571249 SREBF2Q12772 1141 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 CRY2Q49AN0 593 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 AMOTQ4VCS5 1084 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 DZIP3Q86Y13 1208 aaKnown RBP9.59□□□□□ -0.87
CHD3-213ENST00000571249 AEBP1Q8IUX7 1158 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 FAM161BQ96MY7 647 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 CARD11Q9BXL7 1154 aa9.59□□□□□ -0.87
CHD3-213ENST00000571249 ZNF609O15014 1411 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 PSMD14O00487 310 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 PPEF1O14829 653 aaPredicted RBP9.58□□□□□ -0.88
CHD3-213ENST00000571249 FKBP1BP68106 108 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 MTFR1Q15390 333 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 NUTM1Q86Y26 1132 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 IFNL1Q8IU54 200 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 DPF2Q92785 391 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 KCNQ5Q9NR82 932 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 POLKQ9UBT6 870 aa9.58□□□□□ -0.88
CHD3-213ENST00000571249 NIP7Q9Y221 180 aaKnown RBP eCLIP9.58□□□□□ -0.88
CHD3-213ENST00000571249 IGF2BP3O00425 579 aaKnown RBP eCLIP9.57□□□□□ -0.88
CHD3-213ENST00000571249 PTPN12Q05209 780 aaKnown RBP9.57□□□□□ -0.88
CHD3-213ENST00000571249 CRHR2Q13324 411 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms