RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ISCA1Q9BUE6 129 aa21.88■■□□□ 1.09
CLN3-231ENST00000568422 MBIPQ9NS73 344 aa21.88■■□□□ 1.09
CLN3-231ENST00000568422 LRRC37AA6NMS7 1700 aa21.88■■□□□ 1.09
CLN3-231ENST00000568422 ZNF853P0CG23 659 aa21.87■■□□□ 1.09
CLN3-231ENST00000568422 SLC51AQ86UW1 340 aa21.87■■□□□ 1.09
CLN3-231ENST00000568422 IFT57Q9NWB7 429 aa21.87■■□□□ 1.09
CLN3-231ENST00000568422 EPS15P42566 896 aa21.86■■□□□ 1.09
CLN3-231ENST00000568422 GNAI1P63096 354 aa21.86■■□□□ 1.09
CLN3-231ENST00000568422 KIAA2012Q0VF49 1180 aa21.86■■□□□ 1.09
CLN3-231ENST00000568422 TRIM28Q13263 835 aaKnown RBP21.86■■□□□ 1.09
CLN3-231ENST00000568422 TNS4Q8IZW8 715 aa21.86■■□□□ 1.09
CLN3-231ENST00000568422 APAF1O14727 1248 aa21.85■■□□□ 1.09
CLN3-231ENST00000568422 CHMP4AQ9BY43 222 aa21.85■■□□□ 1.09
CLN3-231ENST00000568422 TRPM7Q96QT4 1865 aa21.85■■□□□ 1.09
CLN3-231ENST00000568422 CDHR2Q9BYE9 1310 aa21.84■■□□□ 1.09
CLN3-231ENST00000568422 RASSF10A6NK89 507 aa21.84■■□□□ 1.09
CLN3-231ENST00000568422 CXCL9Q07325 125 aa21.84■■□□□ 1.09
CLN3-231ENST00000568422 SF3B3Q15393 1217 aaKnown RBP21.84■■□□□ 1.09
CLN3-231ENST00000568422 FAM89AQ96GI7 184 aa21.84■■□□□ 1.09
CLN3-231ENST00000568422 ADARB2Q9NS39 739 aaKnown RBP21.84■■□□□ 1.09
CLN3-231ENST00000568422 GPRC5DQ9NZD1 345 aa21.84■■□□□ 1.09
CLN3-231ENST00000568422 ATP5J2-PTCD1G3V325 749 aa21.83■■□□□ 1.09
CLN3-231ENST00000568422 VEGFBP49765 207 aa21.83■■□□□ 1.09
CLN3-231ENST00000568422 TNIP1Q15025 636 aa21.83■■□□□ 1.09
CLN3-231ENST00000568422 HSP90B1P14625 803 aaKnown RBP21.82■■□□□ 1.08
CLN3-231ENST00000568422 GOLGA2Q08379 1002 aa21.82■■□□□ 1.08
CLN3-231ENST00000568422 DEFB115Q30KQ5 88 aa21.82■■□□□ 1.08
CLN3-231ENST00000568422 CIAPIN1Q6FI81 312 aa21.82■■□□□ 1.08
CLN3-231ENST00000568422 DUOX1Q9NRD9 1551 aa21.81■■□□□ 1.08
CLN3-231ENST00000568422 RIC3Q7Z5B4 369 aa21.8■■□□□ 1.08
CLN3-231ENST00000568422 AIDAQ96BJ3 306 aa21.8■■□□□ 1.08
CLN3-231ENST00000568422 ABT1Q9ULW3 272 aaKnown RBP21.8■■□□□ 1.08
CLN3-231ENST00000568422 IRS4O14654 1257 aaPredicted RBP21.79■■□□□ 1.08
CLN3-231ENST00000568422 GMPSP49915 693 aaPredicted RBP21.79■■□□□ 1.08
CLN3-231ENST00000568422 ZBTB38Q8NAP3 1195 aaPredicted RBP21.79■■□□□ 1.08
CLN3-231ENST00000568422 WASHC4Q2M389 1173 aa21.78■■□□□ 1.08
CLN3-231ENST00000568422 BCL2L13Q9BXK5 485 aa21.78■■□□□ 1.08
CLN3-231ENST00000568422 ELL2O00472 640 aaPredicted RBP21.77■■□□□ 1.08
CLN3-231ENST00000568422 RAD17O75943 681 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 CCDC30Q5VVM6 783 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 CCDC191Q8NCU4 936 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 ZC3H15Q8WU90 426 aaKnown RBP21.77■■□□□ 1.08
CLN3-231ENST00000568422 CELF1Q92879 486 aaKnown RBP21.77■■□□□ 1.08
CLN3-231ENST00000568422 ZNF428Q96B54 188 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 PHAXQ9H814 394 aaKnown RBP21.77■■□□□ 1.08
CLN3-231ENST00000568422 PRDM10Q9NQV6 1147 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 WBP1LQ9NX94 342 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 PGAP2Q9UHJ9 254 aa21.77■■□□□ 1.08
CLN3-231ENST00000568422 NSFL1CQ9UNZ2 370 aaKnown RBP21.77■■□□□ 1.08
CLN3-231ENST00000568422 FOXN1O15353 648 aa21.76■■□□□ 1.07
CLN3-231ENST00000568422 DDX58O95786 925 aaKnown RBP21.76■■□□□ 1.07
CLN3-231ENST00000568422 CTCFP49711 727 aaPredicted RBP21.76■■□□□ 1.07
CLN3-231ENST00000568422 WDR33Q9C0J8 1336 aaKnown RBP21.76■■□□□ 1.07
CLN3-231ENST00000568422 RPS8P62241 208 aaKnown RBP21.75■■□□□ 1.07
CLN3-231ENST00000568422 RTL5Q5HYW3 569 aaPredicted RBP21.75■■□□□ 1.07
CLN3-231ENST00000568422 C8orf58Q8NAV2 365 aa21.75■■□□□ 1.07
CLN3-231ENST00000568422 EYA3Q99504 573 aa21.75■■□□□ 1.07
CLN3-231ENST00000568422 YDJCA8MPS7 323 aa21.74■■□□□ 1.07
CLN3-231ENST00000568422 C6orf229H3BNL8 230 aa21.74■■□□□ 1.07
CLN3-231ENST00000568422 ECE1P42892 770 aa21.74■■□□□ 1.07
CLN3-231ENST00000568422 MAP2K1Q02750 393 aaPredicted RBP21.74■■□□□ 1.07
CLN3-231ENST00000568422 CST9Q5W186 159 aa21.74■■□□□ 1.07
CLN3-231ENST00000568422 DPF2Q92785 391 aa21.74■■□□□ 1.07
CLN3-231ENST00000568422 H7C1D1 291 aa21.73■■□□□ 1.07
CLN3-231ENST00000568422 TRAF5O00463 557 aa21.73■■□□□ 1.07
CLN3-231ENST00000568422 PCCAP05165 728 aaPredicted RBP21.73■■□□□ 1.07
CLN3-231ENST00000568422 MYD88Q99836 296 aa21.73■■□□□ 1.07
CLN3-231ENST00000568422 CWC25Q9NXE8 425 aaPredicted RBP21.73■■□□□ 1.07
CLN3-231ENST00000568422 POLLQ9UGP5 575 aa21.73■■□□□ 1.07
CLN3-231ENST00000568422 CNOT7Q9UIV1 285 aaKnown RBP21.73■■□□□ 1.07
CLN3-231ENST00000568422 THSD7BQ9C0I4 1608 aa21.73■■□□□ 1.07
CLN3-231ENST00000568422 GPSM2P81274 684 aa21.72■■□□□ 1.07
CLN3-231ENST00000568422 CCDC152Q4G0S7 254 aa21.72■■□□□ 1.07
CLN3-231ENST00000568422 METTL22Q9BUU2 404 aaPredicted RBP21.72■■□□□ 1.07
CLN3-231ENST00000568422 TLL2Q9Y6L7 1015 aa21.72■■□□□ 1.07
CLN3-231ENST00000568422 PDE8AO60658 829 aa21.71■■□□□ 1.07
CLN3-231ENST00000568422 RPS12P25398 132 aaKnown RBP21.71■■□□□ 1.07
CLN3-231ENST00000568422 FMR1Q06787 632 aaKnown RBP eCLIP21.71■■□□□ 1.07
CLN3-231ENST00000568422 CCDC27Q2M243 656 aa21.71■■□□□ 1.07
CLN3-231ENST00000568422 PODXL2Q9NZ53 605 aa21.71■■□□□ 1.07
CLN3-231ENST00000568422 COL4A1P02462 1669 aa21.71■■□□□ 1.07
CLN3-231ENST00000568422 RIMBP2O15034 1052 aa21.7■■□□□ 1.06
CLN3-231ENST00000568422 CAPN15O75808 1086 aa21.7■■□□□ 1.06
CLN3-231ENST00000568422 CDC37L1Q7L3B6 337 aa21.7■■□□□ 1.06
CLN3-231ENST00000568422 TBC1D16Q8TBP0 767 aa21.7■■□□□ 1.06
CLN3-231ENST00000568422 CAPNS2Q96L46 248 aa21.7■■□□□ 1.06
CLN3-231ENST00000568422 ZC3H12CQ9C0D7 883 aaKnown RBP21.7■■□□□ 1.06
CLN3-231ENST00000568422 DBNDD1Q9H9R9 158 aa21.7■■□□□ 1.06
CLN3-231ENST00000568422 PSMD14O00487 310 aa21.69■■□□□ 1.06
CLN3-231ENST00000568422 HIRAP54198 1017 aaPredicted RBP21.69■■□□□ 1.06
CLN3-231ENST00000568422 MICALL2Q8IY33 904 aa21.69■■□□□ 1.06
CLN3-231ENST00000568422 MYH3P11055 1940 aa21.68■■□□□ 1.06
CLN3-231ENST00000568422 ECE2O60344 883 aa21.68■■□□□ 1.06
CLN3-231ENST00000568422 CELF2O95319 508 aaKnown RBP21.68■■□□□ 1.06
CLN3-231ENST00000568422 NCBP3Q53F19 620 aaKnown RBP21.68■■□□□ 1.06
CLN3-231ENST00000568422 PAXIP1Q6ZW49 1069 aaPredicted RBP21.68■■□□□ 1.06
CLN3-231ENST00000568422 TRPM4Q8TD43 1214 aa21.68■■□□□ 1.06
CLN3-231ENST00000568422 HHIPL1Q96JK4 782 aa21.68■■□□□ 1.06
CLN3-231ENST00000568422 GPR101Q96P66 508 aaPredicted RBP21.68■■□□□ 1.06
CLN3-231ENST00000568422 STK31Q9BXU1 1019 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms