RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CDHR2Q9BYE9 1310 aa17.05■□□□□ 0.32
CLK3-218ENST00000566926 NEURL1BA8MQ27 555 aa17.05■□□□□ 0.32
CLK3-218ENST00000566926 SP8Q8IXZ3 490 aa17.05■□□□□ 0.32
CLK3-218ENST00000566926 LINS1Q8NG48 757 aa17.05■□□□□ 0.32
CLK3-218ENST00000566926 GLTPD2A6NH11 291 aa17.04■□□□□ 0.32
CLK3-218ENST00000566926 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
CLK3-218ENST00000566926 CWF19L2Q2TBE0 894 aaKnown RBP17.04■□□□□ 0.32
CLK3-218ENST00000566926 CCDC152Q4G0S7 254 aa17.04■□□□□ 0.32
CLK3-218ENST00000566926 OLFM4Q6UX06 510 aa17.04■□□□□ 0.32
CLK3-218ENST00000566926 IARSP41252 1262 aaKnown RBP17.03■□□□□ 0.32
CLK3-218ENST00000566926 SUPT20HQ8NEM7 779 aa17.03■□□□□ 0.32
CLK3-218ENST00000566926 CDCA7LQ96GN5 454 aa17.03■□□□□ 0.32
CLK3-218ENST00000566926 VPS33BQ9H267 617 aa17.03■□□□□ 0.32
CLK3-218ENST00000566926 ZNF277Q9NRM2 450 aaPredicted RBP17.03■□□□□ 0.32
CLK3-218ENST00000566926 H7C1W4 665 aa17.02■□□□□ 0.32
CLK3-218ENST00000566926 C1QTNF8P60827 252 aa17.02■□□□□ 0.32
CLK3-218ENST00000566926 GCKRQ14397 625 aa17.02■□□□□ 0.32
CLK3-218ENST00000566926 ALDH1L2Q3SY69 923 aa17.02■□□□□ 0.32
CLK3-218ENST00000566926 JDP2Q8WYK2 163 aa17.02■□□□□ 0.32
CLK3-218ENST00000566926 SNED1Q8TER0 1413 aa17.02■□□□□ 0.31
CLK3-218ENST00000566926 KIF3CO14782 793 aa17.01■□□□□ 0.31
CLK3-218ENST00000566926 C16orf71Q8IYS4 520 aaPredicted RBP17.01■□□□□ 0.31
CLK3-218ENST00000566926 MPNDQ8N594 471 aa17.01■□□□□ 0.31
CLK3-218ENST00000566926 LRRC37AA6NMS7 1700 aa17.01■□□□□ 0.31
CLK3-218ENST00000566926 PTPRCP08575 1304 aa17■□□□□ 0.31
CLK3-218ENST00000566926 RPS8P62241 208 aaKnown RBP17■□□□□ 0.31
CLK3-218ENST00000566926 DPP8Q6V1X1 898 aaPredicted RBP17■□□□□ 0.31
CLK3-218ENST00000566926 UBE3BQ7Z3V4 1068 aa17■□□□□ 0.31
CLK3-218ENST00000566926 MRPL50Q8N5N7 158 aaKnown RBP17■□□□□ 0.31
CLK3-218ENST00000566926 JARID2Q92833 1246 aaPredicted RBP17■□□□□ 0.31
CLK3-218ENST00000566926 NMRK2Q9NPI5 230 aa17■□□□□ 0.31
CLK3-218ENST00000566926 WDR90Q96KV7 1748 aa16.99■□□□□ 0.31
CLK3-218ENST00000566926 F6X3S4 739 aa16.99■□□□□ 0.31
CLK3-218ENST00000566926 CTSWP56202 376 aa16.99■□□□□ 0.31
CLK3-218ENST00000566926 BEND3Q5T5X7 828 aa16.99■□□□□ 0.31
CLK3-218ENST00000566926 LARGE2Q8N3Y3 721 aa16.99■□□□□ 0.31
CLK3-218ENST00000566926 CELF1Q92879 486 aaKnown RBP16.99■□□□□ 0.31
CLK3-218ENST00000566926 RTFDC1Q9BY42 306 aaPredicted RBP16.99■□□□□ 0.31
CLK3-218ENST00000566926 RRAGCQ9HB90 399 aa16.99■□□□□ 0.31
CLK3-218ENST00000566926 SCN4AP35499 1836 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 ALDH1L1O75891 902 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 TOMM70O94826 608 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 NEFLP07196 543 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 VEGFAP15692 232 aaPredicted RBP16.98■□□□□ 0.31
CLK3-218ENST00000566926 SSH1Q8WYL5 1049 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 CDC5LQ99459 802 aaKnown RBP16.98■□□□□ 0.31
CLK3-218ENST00000566926 PLA2G12BQ9BX93 195 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 RCAN3Q9UKA8 241 aa16.98■□□□□ 0.31
CLK3-218ENST00000566926 PPIP5K2O43314 1243 aa16.97■□□□□ 0.31
CLK3-218ENST00000566926 EIF6P56537 245 aaKnown RBP16.97■□□□□ 0.31
CLK3-218ENST00000566926 SLC4A10Q6U841 1118 aa16.97■□□□□ 0.31
CLK3-218ENST00000566926 ANKRD18AQ8IVF6 992 aa16.97■□□□□ 0.31
CLK3-218ENST00000566926 TTLL11Q8NHH1 800 aa16.97■□□□□ 0.31
CLK3-218ENST00000566926 SRCIN1Q9C0H9 1055 aa16.97■□□□□ 0.31
CLK3-218ENST00000566926 SMC4Q9NTJ3 1288 aa16.97■□□□□ 0.31
CLK3-218ENST00000566926 SPEF2Q9C093 1822 aa16.96■□□□□ 0.31
CLK3-218ENST00000566926 FZD9O00144 591 aa16.96■□□□□ 0.31
CLK3-218ENST00000566926 NIM1KQ8IY84 436 aa16.96■□□□□ 0.31
CLK3-218ENST00000566926 SEC31BQ9NQW1 1179 aa16.96■□□□□ 0.31
CLK3-218ENST00000566926 C9orf78Q9NZ63 289 aaPredicted RBP16.96■□□□□ 0.31
CLK3-218ENST00000566926 RTL9Q8NET4 1388 aa16.96■□□□□ 0.31
CLK3-218ENST00000566926 GRM8O00222 908 aa16.95■□□□□ 0.3
CLK3-218ENST00000566926 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
CLK3-218ENST00000566926 CCDC85AQ96PX6 553 aaPredicted RBP16.95■□□□□ 0.3
CLK3-218ENST00000566926 NSFL1CQ9UNZ2 370 aaKnown RBP16.95■□□□□ 0.3
CLK3-218ENST00000566926 IQCA1LA6NCM1 817 aa16.94■□□□□ 0.3
CLK3-218ENST00000566926 DDNO94850 711 aaPredicted RBP16.94■□□□□ 0.3
CLK3-218ENST00000566926 CASP7P55210 303 aa16.94■□□□□ 0.3
CLK3-218ENST00000566926 EYA3Q99504 573 aa16.94■□□□□ 0.3
CLK3-218ENST00000566926 BCL2L13Q9BXK5 485 aa16.94■□□□□ 0.3
CLK3-218ENST00000566926 CSF1RP07333 972 aa16.93■□□□□ 0.3
CLK3-218ENST00000566926 IGHMBP2P38935 993 aaKnown RBP16.93■□□□□ 0.3
CLK3-218ENST00000566926 BRPF1P55201 1214 aaPredicted RBP16.93■□□□□ 0.3
CLK3-218ENST00000566926 KIAA2012Q0VF49 1180 aa16.93■□□□□ 0.3
CLK3-218ENST00000566926 AOC3Q16853 763 aa16.93■□□□□ 0.3
CLK3-218ENST00000566926 GPC2Q8N158 579 aa16.93■□□□□ 0.3
CLK3-218ENST00000566926 L3MBTL3Q96JM7 780 aaPredicted RBP16.93■□□□□ 0.3
CLK3-218ENST00000566926 GREM2Q9H772 168 aa16.93■□□□□ 0.3
CLK3-218ENST00000566926 PODXL2Q9NZ53 605 aa16.93■□□□□ 0.3
CLK3-218ENST00000566926 C6orf229H3BNL8 230 aa16.92■□□□□ 0.3
CLK3-218ENST00000566926 WASHC4Q2M389 1173 aa16.92■□□□□ 0.3
CLK3-218ENST00000566926 BSDC1Q9NW68 430 aaPredicted RBP16.92■□□□□ 0.3
CLK3-218ENST00000566926 ANKIB1Q9P2G1 1089 aa16.92■□□□□ 0.3
CLK3-218ENST00000566926 SUPT16HQ9Y5B9 1047 aaKnown RBP16.92■□□□□ 0.3
CLK3-218ENST00000566926 ZNF541Q9H0D2 1346 aa16.92■□□□□ 0.3
CLK3-218ENST00000566926 LTBP1Q14766 1721 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 ITGA6P23229 1130 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 GPSM2P81274 684 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 FSTL1Q12841 308 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 SLC51AQ86UW1 340 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.91■□□□□ 0.3
CLK3-218ENST00000566926 API5Q9BZZ5 524 aaKnown RBP16.91■□□□□ 0.3
CLK3-218ENST00000566926 ZNRF3Q9ULT6 936 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 COL4A1P02462 1669 aa16.91■□□□□ 0.3
CLK3-218ENST00000566926 DUOX1Q9NRD9 1551 aa16.9■□□□□ 0.3
CLK3-218ENST00000566926 ANKRD18BA2A2Z9 1011 aa16.9■□□□□ 0.3
CLK3-218ENST00000566926 RARSP54136 660 aaKnown RBP16.9■□□□□ 0.3
CLK3-218ENST00000566926 ERICH6BQ5W0A0 696 aa16.9■□□□□ 0.3
CLK3-218ENST00000566926 MPHOSPH8Q99549 860 aa16.9■□□□□ 0.3
CLK3-218ENST00000566926 ZC3H12CQ9C0D7 883 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms