RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 RTL5Q5HYW3 569 aaPredicted RBP13.91□□□□□ -0.18
CLN3-224ENST00000566816 TMC4Q7Z404 712 aa13.91□□□□□ -0.18
CLN3-224ENST00000566816 CCDC24Q8N4L8 307 aa13.91□□□□□ -0.18
CLN3-224ENST00000566816 JARID2Q92833 1246 aaPredicted RBP13.91□□□□□ -0.18
CLN3-224ENST00000566816 SUCLG2Q96I99 432 aa13.91□□□□□ -0.18
CLN3-224ENST00000566816 PIM2Q9P1W9 311 aa13.91□□□□□ -0.18
CLN3-224ENST00000566816 AFDNP55196 1824 aaKnown RBP13.91□□□□□ -0.18
CLN3-224ENST00000566816 DPEP1P16444 411 aa13.9□□□□□ -0.18
CLN3-224ENST00000566816 EPHA10Q5JZY3 1008 aa13.9□□□□□ -0.18
CLN3-224ENST00000566816 C3orf67Q6ZVT6 689 aa13.9□□□□□ -0.18
CLN3-224ENST00000566816 DDX46Q7L014 1031 aaKnown RBP13.9□□□□□ -0.18
CLN3-224ENST00000566816 RPGRQ92834 1020 aaKnown RBP13.9□□□□□ -0.18
CLN3-224ENST00000566816 A0A0G2JLW4 131 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 GRIPAP1Q4V328 841 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 LMBR1LQ6UX01 489 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 RPAP2Q8IXW5 612 aaPredicted RBP13.89□□□□□ -0.19
CLN3-224ENST00000566816 TTLL6Q8N841 843 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 ANKRD44Q8N8A2 993 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 CDC5LQ99459 802 aaKnown RBP13.89□□□□□ -0.19
CLN3-224ENST00000566816 BICC1Q9H694 974 aaKnown RBP13.89□□□□□ -0.19
CLN3-224ENST00000566816 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 LRRFIP2Q9Y608 721 aaKnown RBP13.89□□□□□ -0.19
CLN3-224ENST00000566816 KIF13BQ9NQT8 1826 aa13.89□□□□□ -0.19
CLN3-224ENST00000566816 N4BP2Q86UW6 1770 aaPredicted RBP13.88□□□□□ -0.19
CLN3-224ENST00000566816 CHRNA5P30532 468 aa13.88□□□□□ -0.19
CLN3-224ENST00000566816 RPS8P62241 208 aaKnown RBP13.88□□□□□ -0.19
CLN3-224ENST00000566816 ATP8B2P98198 1209 aa13.88□□□□□ -0.19
CLN3-224ENST00000566816 IFIT5Q13325 482 aaKnown RBP13.88□□□□□ -0.19
CLN3-224ENST00000566816 GRAPQ13588 217 aa13.88□□□□□ -0.19
CLN3-224ENST00000566816 CC2D2BQ6DHV5 1058 aa13.88□□□□□ -0.19
CLN3-224ENST00000566816 GRAPLQ8TC17 118 aaPredicted RBP13.88□□□□□ -0.19
CLN3-224ENST00000566816 ANKRD18BA2A2Z9 1011 aa13.87□□□□□ -0.19
CLN3-224ENST00000566816 CCDC57Q2TAC2 916 aa13.87□□□□□ -0.19
CLN3-224ENST00000566816 DALRD3Q5D0E6 543 aaKnown RBP13.87□□□□□ -0.19
CLN3-224ENST00000566816 C7orf43Q8WVR3 580 aa13.87□□□□□ -0.19
CLN3-224ENST00000566816 GREM2Q9H772 168 aa13.87□□□□□ -0.19
CLN3-224ENST00000566816 ITGA6P23229 1130 aa13.86□□□□□ -0.19
CLN3-224ENST00000566816 SOGA3Q5TF21 947 aa13.86□□□□□ -0.19
CLN3-224ENST00000566816 SP8Q8IXZ3 490 aa13.86□□□□□ -0.19
CLN3-224ENST00000566816 NLGN2Q8NFZ4 835 aa13.86□□□□□ -0.19
CLN3-224ENST00000566816 ZNF622Q969S3 477 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLN3-224ENST00000566816 BSDC1Q9NW68 430 aaPredicted RBP13.86□□□□□ -0.19
CLN3-224ENST00000566816 POLA2Q14181 598 aa13.85□□□□□ -0.19
CLN3-224ENST00000566816 ANKRD18AQ8IVF6 992 aa13.85□□□□□ -0.19
CLN3-224ENST00000566816 KLHL34Q8N239 644 aa13.85□□□□□ -0.19
CLN3-224ENST00000566816 SSH3Q8TE77 659 aa13.85□□□□□ -0.19
CLN3-224ENST00000566816 CRBNQ96SW2 442 aa13.85□□□□□ -0.19
CLN3-224ENST00000566816 COPRSQ9NQ92 184 aa13.85□□□□□ -0.19
CLN3-224ENST00000566816 IGHMBP2P38935 993 aaKnown RBP13.84□□□□□ -0.19
CLN3-224ENST00000566816 RFX5P48382 616 aaPredicted RBP13.84□□□□□ -0.19
CLN3-224ENST00000566816 FAM161AQ3B820 660 aa13.84□□□□□ -0.19
CLN3-224ENST00000566816 PRPF40BQ6NWY9 871 aaKnown RBP13.84□□□□□ -0.19
CLN3-224ENST00000566816 CEP85Q6P2H3 762 aa13.84□□□□□ -0.19
CLN3-224ENST00000566816 CELF1Q92879 486 aaKnown RBP13.84□□□□□ -0.19
CLN3-224ENST00000566816 TMX4Q9H1E5 349 aaPredicted RBP13.84□□□□□ -0.19
CLN3-224ENST00000566816 SEC31BQ9NQW1 1179 aa13.84□□□□□ -0.19
CLN3-224ENST00000566816 ATP6V0A2Q9Y487 856 aa13.84□□□□□ -0.19
CLN3-224ENST00000566816 ANKRD31Q8N7Z5 1873 aa13.84□□□□□ -0.19
CLN3-224ENST00000566816 SRGAP3O43295 1099 aa13.83□□□□□ -0.2
CLN3-224ENST00000566816 HMMRO75330 724 aa13.83□□□□□ -0.2
CLN3-224ENST00000566816 PTPN12Q05209 780 aaKnown RBP13.83□□□□□ -0.2
CLN3-224ENST00000566816 ERICH6BQ5W0A0 696 aa13.83□□□□□ -0.2
CLN3-224ENST00000566816 DDX60Q8IY21 1712 aaKnown RBP13.83□□□□□ -0.2
CLN3-224ENST00000566816 LAMB2P55268 1798 aa13.82□□□□□ -0.2
CLN3-224ENST00000566816 PPEF1O14829 653 aaPredicted RBP13.82□□□□□ -0.2
CLN3-224ENST00000566816 CIAO1O76071 339 aa13.82□□□□□ -0.2
CLN3-224ENST00000566816 LDHAL6AQ6ZMR3 332 aa13.82□□□□□ -0.2
CLN3-224ENST00000566816 RTKN2Q8IZC4 609 aa13.82□□□□□ -0.2
CLN3-224ENST00000566816 MPHOSPH8Q99549 860 aa13.82□□□□□ -0.2
CLN3-224ENST00000566816 NOP58Q9Y2X3 529 aaKnown RBP13.82□□□□□ -0.2
CLN3-224ENST00000566816 CHMP3Q9Y3E7 222 aa13.82□□□□□ -0.2
CLN3-224ENST00000566816 PNMA6EA0A0J9YXQ4 647 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 GRIN3BO60391 1043 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 EXOC6Q8TAG9 804 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 CCDC85AQ96PX6 553 aaPredicted RBP13.81□□□□□ -0.2
CLN3-224ENST00000566816 ANKRD2Q9GZV1 360 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 VPS33BQ9H267 617 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 PODXL2Q9NZ53 605 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 RIPOR2Q9Y4F9 1068 aa13.81□□□□□ -0.2
CLN3-224ENST00000566816 TNRC6CQ9HCJ0 1690 aaKnown RBP13.8□□□□□ -0.2
CLN3-224ENST00000566816 EYA2O00167 538 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 HSP90AB4PQ58FF6 505 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 TAF7LQ5H9L4 462 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 SIRT2Q8IXJ6 389 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 C1orf115Q9H7X2 142 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 MINPP1Q9UNW1 487 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 BCS1LQ9Y276 419 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 KIAA1551Q9HCM1 1747 aa13.8□□□□□ -0.2
CLN3-224ENST00000566816 IL15P40933 162 aaPredicted RBP13.79□□□□□ -0.2
CLN3-224ENST00000566816 HDAC1Q13547 482 aaPredicted RBP13.79□□□□□ -0.2
CLN3-224ENST00000566816 CCDC93Q567U6 631 aa13.79□□□□□ -0.2
CLN3-224ENST00000566816 PSMD1Q99460 953 aa13.79□□□□□ -0.2
CLN3-224ENST00000566816 RTFDC1Q9BY42 306 aaPredicted RBP13.79□□□□□ -0.2
CLN3-224ENST00000566816 PCDHB15Q9Y5E8 787 aa13.79□□□□□ -0.2
CLN3-224ENST00000566816 MROH5Q6ZUA9 1318 aa13.79□□□□□ -0.2
CLN3-224ENST00000566816 DCAF8L1A6NGE4 600 aa13.78□□□□□ -0.2
CLN3-224ENST00000566816 C21orf2O43822 256 aa13.78□□□□□ -0.2
CLN3-224ENST00000566816 NEFLP07196 543 aa13.78□□□□□ -0.2
CLN3-224ENST00000566816 ZNF594Q96JF6 807 aaPredicted RBP13.78□□□□□ -0.2
CLN3-224ENST00000566816 CNNM1Q9NRU3 951 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms