RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 RTL5Q5HYW3 569 aaPredicted RBP23.69■■□□□ 1.38
USB1-213ENST00000566292 DPP8Q6V1X1 898 aaPredicted RBP23.69■■□□□ 1.38
USB1-213ENST00000566292 MPNDQ8N594 471 aa23.69■■□□□ 1.38
USB1-213ENST00000566292 VPS33BQ9H267 617 aa23.69■■□□□ 1.38
USB1-213ENST00000566292 CREBZFQ9NS37 354 aa23.69■■□□□ 1.38
USB1-213ENST00000566292 ZNF316A6NFI3 1004 aaPredicted RBP23.68■■□□□ 1.38
USB1-213ENST00000566292 ITGBL1O95965 494 aaPredicted RBP23.68■■□□□ 1.38
USB1-213ENST00000566292 SF3B3Q15393 1217 aaKnown RBP23.68■■□□□ 1.38
USB1-213ENST00000566292 CCDC27Q2M243 656 aa23.68■■□□□ 1.38
USB1-213ENST00000566292 PNMA8AQ86V59 439 aaPredicted RBP23.68■■□□□ 1.38
USB1-213ENST00000566292 SUPT20HQ8NEM7 779 aa23.68■■□□□ 1.38
USB1-213ENST00000566292 TSR2Q969E8 191 aaKnown RBP23.68■■□□□ 1.38
USB1-213ENST00000566292 CLEC11AQ9Y240 323 aa23.68■■□□□ 1.38
USB1-213ENST00000566292 SCNN1DP51172 638 aa23.67■■□□□ 1.38
USB1-213ENST00000566292 IFFO2Q5TF58 517 aa23.67■■□□□ 1.38
USB1-213ENST00000566292 CCDC30Q5VVM6 783 aa23.67■■□□□ 1.38
USB1-213ENST00000566292 WWC1Q8IX03 1113 aa23.67■■□□□ 1.38
USB1-213ENST00000566292 CELF1Q92879 486 aaKnown RBP23.67■■□□□ 1.38
USB1-213ENST00000566292 IRS4O14654 1257 aaPredicted RBP23.66■■□□□ 1.38
USB1-213ENST00000566292 TMC4Q7Z404 712 aa23.66■■□□□ 1.38
USB1-213ENST00000566292 MYD88Q99836 296 aa23.66■■□□□ 1.38
USB1-213ENST00000566292 MRS2Q9HD23 443 aa23.66■■□□□ 1.38
USB1-213ENST00000566292 EPS15P42566 896 aa23.65■■□□□ 1.38
USB1-213ENST00000566292 KIAA2012Q0VF49 1180 aa23.65■■□□□ 1.38
USB1-213ENST00000566292 LMOD1P29536 600 aaPredicted RBP23.64■■□□□ 1.37
USB1-213ENST00000566292 CXCL9Q07325 125 aa23.64■■□□□ 1.37
USB1-213ENST00000566292 MAP1SQ66K74 1059 aaPredicted RBP23.64■■□□□ 1.37
USB1-213ENST00000566292 ZBTB38Q8NAP3 1195 aaPredicted RBP23.64■■□□□ 1.37
USB1-213ENST00000566292 ZNRF3Q9ULT6 936 aa23.64■■□□□ 1.37
USB1-213ENST00000566292 CCDC191Q8NCU4 936 aa23.63■■□□□ 1.37
USB1-213ENST00000566292 METTL22Q9BUU2 404 aaPredicted RBP23.63■■□□□ 1.37
USB1-213ENST00000566292 MKRN1Q9UHC7 482 aaKnown RBP23.63■■□□□ 1.37
USB1-213ENST00000566292 ANP32CO43423 234 aa23.62■■□□□ 1.37
USB1-213ENST00000566292 CNTROBQ8N137 903 aa23.62■■□□□ 1.37
USB1-213ENST00000566292 CHMP4AQ9BY43 222 aa23.62■■□□□ 1.37
USB1-213ENST00000566292 JARID2Q92833 1246 aaPredicted RBP23.61■■□□□ 1.37
USB1-213ENST00000566292 IL16Q14005 1332 aa23.6■■□□□ 1.37
USB1-213ENST00000566292 DDX58O95786 925 aaKnown RBP23.6■■□□□ 1.37
USB1-213ENST00000566292 PCCAP05165 728 aaPredicted RBP23.6■■□□□ 1.37
USB1-213ENST00000566292 NCBP3Q53F19 620 aaKnown RBP23.6■■□□□ 1.37
USB1-213ENST00000566292 CWC25Q9NXE8 425 aaPredicted RBP23.6■■□□□ 1.37
USB1-213ENST00000566292 GPRC5DQ9NZD1 345 aa23.6■■□□□ 1.37
USB1-213ENST00000566292 MAP3K2Q9Y2U5 619 aa23.6■■□□□ 1.37
USB1-213ENST00000566292 MYH3P11055 1940 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 TMEM88BA6NKF7 163 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 YDJCA8MPS7 323 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 TWISTNBQ3B726 338 aaPredicted RBP23.59■■□□□ 1.37
USB1-213ENST00000566292 CIAPIN1Q6FI81 312 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 SEC31BQ9NQW1 1179 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 NSFL1CQ9UNZ2 370 aaKnown RBP23.59■■□□□ 1.37
USB1-213ENST00000566292 CNTNAP1P78357 1384 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 TRPM7Q96QT4 1865 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 CACNA1FO60840 1977 aa23.59■■□□□ 1.37
USB1-213ENST00000566292 RAD17O75943 681 aa23.58■■□□□ 1.37
USB1-213ENST00000566292 RPS8P62241 208 aaKnown RBP23.58■■□□□ 1.37
USB1-213ENST00000566292 GPSM2P81274 684 aa23.58■■□□□ 1.37
USB1-213ENST00000566292 KSR2Q6VAB6 950 aa23.58■■□□□ 1.37
USB1-213ENST00000566292 USP50Q70EL3 339 aaPredicted RBP23.58■■□□□ 1.37
USB1-213ENST00000566292 PI4KAP2A4QPH2 592 aa23.57■■□□□ 1.36
USB1-213ENST00000566292 IGKV5-2P06315 115 aa23.57■■□□□ 1.36
USB1-213ENST00000566292 HSPA1AP0DMV8 641 aaKnown RBP23.57■■□□□ 1.36
USB1-213ENST00000566292 HSPA1BP0DMV9 641 aaKnown RBP23.57■■□□□ 1.36
USB1-213ENST00000566292 GMPSP49915 693 aaPredicted RBP23.57■■□□□ 1.36
USB1-213ENST00000566292 G2E3Q7L622 706 aa23.57■■□□□ 1.36
USB1-213ENST00000566292 PI4KAP1Q8N8J0 262 aa23.57■■□□□ 1.36
USB1-213ENST00000566292 STK31Q9BXU1 1019 aa23.57■■□□□ 1.36
USB1-213ENST00000566292 POLLQ9UGP5 575 aa23.57■■□□□ 1.36
USB1-213ENST00000566292 PDE8AO60658 829 aa23.56■■□□□ 1.36
USB1-213ENST00000566292 WASHC4Q2M389 1173 aa23.56■■□□□ 1.36
USB1-213ENST00000566292 ADARB2Q9NS39 739 aaKnown RBP23.56■■□□□ 1.36
USB1-213ENST00000566292 SPEF2Q9C093 1822 aa23.55■■□□□ 1.36
USB1-213ENST00000566292 HSP90B1P14625 803 aaKnown RBP23.55■■□□□ 1.36
USB1-213ENST00000566292 FMR1Q06787 632 aaKnown RBP eCLIP23.55■■□□□ 1.36
USB1-213ENST00000566292 SALL2Q9Y467 1007 aaPredicted RBP23.55■■□□□ 1.36
USB1-213ENST00000566292 FANCIQ9NVI1 1328 aa23.55■■□□□ 1.36
USB1-213ENST00000566292 C6orf229H3BNL8 230 aa23.54■■□□□ 1.36
USB1-213ENST00000566292 TNIP1Q15025 636 aa23.54■■□□□ 1.36
USB1-213ENST00000566292 CCDC152Q4G0S7 254 aa23.54■■□□□ 1.36
USB1-213ENST00000566292 COL13A1Q5TAT6 717 aaPredicted RBP23.54■■□□□ 1.36
USB1-213ENST00000566292 GPR101Q96P66 508 aaPredicted RBP23.54■■□□□ 1.36
USB1-213ENST00000566292 CCDC85AQ96PX6 553 aaPredicted RBP23.54■■□□□ 1.36
USB1-213ENST00000566292 DBNDD1Q9H9R9 158 aa23.54■■□□□ 1.36
USB1-213ENST00000566292 SCN9AQ15858 1988 aa23.54■■□□□ 1.36
USB1-213ENST00000566292 CDHR2Q9BYE9 1310 aa23.54■■□□□ 1.36
USB1-213ENST00000566292 RIMBP2O15034 1052 aa23.53■■□□□ 1.36
USB1-213ENST00000566292 SLC4A2P04920 1241 aa23.53■■□□□ 1.36
USB1-213ENST00000566292 TBC1D16Q8TBP0 767 aa23.53■■□□□ 1.36
USB1-213ENST00000566292 BCL2L13Q9BXK5 485 aa23.53■■□□□ 1.36
USB1-213ENST00000566292 VEGFBP49765 207 aa23.52■■□□□ 1.36
USB1-213ENST00000566292 CWF19L2Q2TBE0 894 aaKnown RBP23.52■■□□□ 1.36
USB1-213ENST00000566292 SHTN1A0MZ66 631 aa23.51■■□□□ 1.35
USB1-213ENST00000566292 WDR63Q8IWG1 891 aa23.51■■□□□ 1.35
USB1-213ENST00000566292 PODXL2Q9NZ53 605 aa23.51■■□□□ 1.35
USB1-213ENST00000566292 RASSF10A6NK89 507 aa23.5■■□□□ 1.35
USB1-213ENST00000566292 NEURL1BA8MQ27 555 aa23.5■■□□□ 1.35
USB1-213ENST00000566292 TRAF5O00463 557 aa23.5■■□□□ 1.35
USB1-213ENST00000566292 PSMD14O00487 310 aa23.5■■□□□ 1.35
USB1-213ENST00000566292 NEXNQ0ZGT2 675 aa23.5■■□□□ 1.35
USB1-213ENST00000566292 EYA3Q99504 573 aa23.5■■□□□ 1.35
USB1-213ENST00000566292 ZBTB12Q9Y330 459 aaPredicted RBP23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms