RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 USP50Q70EL3 339 aaPredicted RBP19.26■□□□□ 0.67
CLN3-222ENST00000566083 CCDC30Q5VVM6 783 aa19.25■□□□□ 0.67
CLN3-222ENST00000566083 ATP5J2-PTCD1G3V325 749 aa19.25■□□□□ 0.67
CLN3-222ENST00000566083 SCNN1DP51172 638 aa19.25■□□□□ 0.67
CLN3-222ENST00000566083 TNIP1Q15025 636 aa19.25■□□□□ 0.67
CLN3-222ENST00000566083 FAM89AQ96GI7 184 aa19.25■□□□□ 0.67
CLN3-222ENST00000566083 CDHR2Q9BYE9 1310 aa19.24■□□□□ 0.67
CLN3-222ENST00000566083 CCDC27Q2M243 656 aa19.24■□□□□ 0.67
CLN3-222ENST00000566083 NCBP3Q53F19 620 aaKnown RBP19.24■□□□□ 0.67
CLN3-222ENST00000566083 ZBTB38Q8NAP3 1195 aaPredicted RBP19.24■□□□□ 0.67
CLN3-222ENST00000566083 CCDC191Q8NCU4 936 aa19.24■□□□□ 0.67
CLN3-222ENST00000566083 CNTNAP1P78357 1384 aa19.23■□□□□ 0.67
CLN3-222ENST00000566083 IRS4O14654 1257 aaPredicted RBP19.23■□□□□ 0.67
CLN3-222ENST00000566083 HSPA1AP0DMV8 641 aaKnown RBP19.23■□□□□ 0.67
CLN3-222ENST00000566083 HSPA1BP0DMV9 641 aaKnown RBP19.23■□□□□ 0.67
CLN3-222ENST00000566083 MAP1SQ66K74 1059 aaPredicted RBP19.23■□□□□ 0.67
CLN3-222ENST00000566083 CIAPIN1Q6FI81 312 aa19.23■□□□□ 0.67
CLN3-222ENST00000566083 ADARB2Q9NS39 739 aaKnown RBP19.23■□□□□ 0.67
CLN3-222ENST00000566083 MKRN1Q9UHC7 482 aaKnown RBP19.23■□□□□ 0.67
CLN3-222ENST00000566083 COL4A5P29400 1685 aa19.23■□□□□ 0.67
CLN3-222ENST00000566083 ADAMTSL1Q8N6G6 1762 aa19.22■□□□□ 0.67
CLN3-222ENST00000566083 ELL2O00472 640 aaPredicted RBP19.22■□□□□ 0.67
CLN3-222ENST00000566083 EPS15P42566 896 aa19.22■□□□□ 0.67
CLN3-222ENST00000566083 CXCL9Q07325 125 aa19.22■□□□□ 0.67
CLN3-222ENST00000566083 GPRC5DQ9NZD1 345 aa19.22■□□□□ 0.67
CLN3-222ENST00000566083 LAMB2P55268 1798 aa19.22■□□□□ 0.67
CLN3-222ENST00000566083 RPS8P62241 208 aaKnown RBP19.2■□□□□ 0.66
CLN3-222ENST00000566083 WASHC4Q2M389 1173 aa19.2■□□□□ 0.66
CLN3-222ENST00000566083 C8orf58Q8NAV2 365 aa19.2■□□□□ 0.66
CLN3-222ENST00000566083 EYA3Q99504 573 aa19.2■□□□□ 0.66
CLN3-222ENST00000566083 BCL2L13Q9BXK5 485 aa19.2■□□□□ 0.66
CLN3-222ENST00000566083 STK31Q9BXU1 1019 aa19.2■□□□□ 0.66
CLN3-222ENST00000566083 PHAXQ9H814 394 aaKnown RBP19.2■□□□□ 0.66
CLN3-222ENST00000566083 NSFL1CQ9UNZ2 370 aaKnown RBP19.2■□□□□ 0.66
CLN3-222ENST00000566083 PCCAP05165 728 aaPredicted RBP19.19■□□□□ 0.66
CLN3-222ENST00000566083 METTL22Q9BUU2 404 aaPredicted RBP19.19■□□□□ 0.66
CLN3-222ENST00000566083 CWC25Q9NXE8 425 aaPredicted RBP19.19■□□□□ 0.66
CLN3-222ENST00000566083 RASSF10A6NK89 507 aa19.18■□□□□ 0.66
CLN3-222ENST00000566083 DEFB115Q30KQ5 88 aa19.18■□□□□ 0.66
CLN3-222ENST00000566083 CCDC152Q4G0S7 254 aa19.18■□□□□ 0.66
CLN3-222ENST00000566083 COL13A1Q5TAT6 717 aaPredicted RBP19.18■□□□□ 0.66
CLN3-222ENST00000566083 ZC3H15Q8WU90 426 aaKnown RBP19.18■□□□□ 0.66
CLN3-222ENST00000566083 CELF1Q92879 486 aaKnown RBP19.18■□□□□ 0.66
CLN3-222ENST00000566083 MYD88Q99836 296 aa19.18■□□□□ 0.66
CLN3-222ENST00000566083 IL16Q14005 1332 aa19.18■□□□□ 0.66
CLN3-222ENST00000566083 PDE8AO60658 829 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 GMPSP49915 693 aaPredicted RBP19.17■□□□□ 0.66
CLN3-222ENST00000566083 RTL5Q5HYW3 569 aaPredicted RBP19.17■□□□□ 0.66
CLN3-222ENST00000566083 SLC51AQ86UW1 340 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 C6orf229H3BNL8 230 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 H7C1D1 291 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 ANP32CO43423 234 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 NEXNQ0ZGT2 675 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 KSR2Q6VAB6 950 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 WWC1Q8IX03 1113 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 DDX60Q8IY21 1712 aaKnown RBP19.17■□□□□ 0.66
CLN3-222ENST00000566083 AIDAQ96BJ3 306 aa19.17■□□□□ 0.66
CLN3-222ENST00000566083 ABT1Q9ULW3 272 aaKnown RBP19.17■□□□□ 0.66
CLN3-222ENST00000566083 PCNTO95613 3336 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 RAD17O75943 681 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 VEGFBP49765 207 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 TNS4Q8IZW8 715 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 DPF2Q92785 391 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 ZNF428Q96B54 188 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 PODXL2Q9NZ53 605 aa19.16■□□□□ 0.66
CLN3-222ENST00000566083 LRRC37AA6NMS7 1700 aa19.15■□□□□ 0.66
CLN3-222ENST00000566083 PGAP2Q9UHJ9 254 aa19.15■□□□□ 0.66
CLN3-222ENST00000566083 MAP3K2Q9Y2U5 619 aa19.15■□□□□ 0.66
CLN3-222ENST00000566083 LTBP1Q14766 1721 aa19.14■□□□□ 0.65
CLN3-222ENST00000566083 RPS12P25398 132 aaKnown RBP19.14■□□□□ 0.65
CLN3-222ENST00000566083 ECE1P42892 770 aa19.14■□□□□ 0.65
CLN3-222ENST00000566083 ZC3H12CQ9C0D7 883 aaKnown RBP19.14■□□□□ 0.65
CLN3-222ENST00000566083 MRS2Q9HD23 443 aa19.14■□□□□ 0.65
CLN3-222ENST00000566083 CNOT7Q9UIV1 285 aaKnown RBP19.14■□□□□ 0.65
CLN3-222ENST00000566083 GPSM2P81274 684 aa19.13■□□□□ 0.65
CLN3-222ENST00000566083 MAP2K1Q02750 393 aaPredicted RBP19.13■□□□□ 0.65
CLN3-222ENST00000566083 TWISTNBQ3B726 338 aaPredicted RBP19.13■□□□□ 0.65
CLN3-222ENST00000566083 TSPYL6Q8N831 410 aa19.13■□□□□ 0.65
CLN3-222ENST00000566083 ANKIB1Q9P2G1 1089 aa19.13■□□□□ 0.65
CLN3-222ENST00000566083 POLLQ9UGP5 575 aa19.13■□□□□ 0.65
CLN3-222ENST00000566083 TAF1P21675 1872 aa19.13■□□□□ 0.65
CLN3-222ENST00000566083 PI4KAP2A4QPH2 592 aa19.12■□□□□ 0.65
CLN3-222ENST00000566083 YDJCA8MPS7 323 aa19.12■□□□□ 0.65
CLN3-222ENST00000566083 PI4KAP1Q8N8J0 262 aa19.12■□□□□ 0.65
CLN3-222ENST00000566083 TBC1D16Q8TBP0 767 aa19.12■□□□□ 0.65
CLN3-222ENST00000566083 TSR2Q969E8 191 aaKnown RBP19.12■□□□□ 0.65
CLN3-222ENST00000566083 CDC5LQ99459 802 aaKnown RBP19.12■□□□□ 0.65
CLN3-222ENST00000566083 DUOX1Q9NRD9 1551 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 ZNF316A6NFI3 1004 aaPredicted RBP19.11■□□□□ 0.65
CLN3-222ENST00000566083 G3V3G9 751 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 CTCFP49711 727 aaPredicted RBP19.11■□□□□ 0.65
CLN3-222ENST00000566083 CCDC184Q52MB2 194 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 DCAF8Q5TAQ9 597 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 CDC37L1Q7L3B6 337 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 ANKRD18AQ8IVF6 992 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 WDR63Q8IWG1 891 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 PRDM10Q9NQV6 1147 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 GGA1Q9UJY5 639 aa19.11■□□□□ 0.65
CLN3-222ENST00000566083 WDR33Q9C0J8 1336 aaKnown RBP19.11■□□□□ 0.65
CLN3-222ENST00000566083 RIMBP2O15034 1052 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms