RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 LGR6Q9HBX8 967 aa12.56□□□□□ -0.4
SMPD3-206ENST00000566009 NR2E3Q9Y5X4 410 aa12.56□□□□□ -0.4
SMPD3-206ENST00000566009 LAMA3Q16787 3333 aa12.56□□□□□ -0.4
SMPD3-206ENST00000566009 PRAMEF22A3QJZ6 481 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 FAM177BA6PVY3 158 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 UBE2Q2LH0YL09 131 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 NBPF11Q86T75 865 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 DZIP3Q86Y13 1208 aaKnown RBP12.55□□□□□ -0.4
SMPD3-206ENST00000566009 CD99L2Q8TCZ2 262 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 DPF2Q92785 391 aa12.55□□□□□ -0.4
SMPD3-206ENST00000566009 SPTBN5Q9NRC6 3674 aaKnown RBP12.55□□□□□ -0.4
SMPD3-206ENST00000566009 ZBTB7BO15156 539 aaPredicted RBP12.54□□□□□ -0.4
SMPD3-206ENST00000566009 ALDH1A1P00352 501 aa12.54□□□□□ -0.4
SMPD3-206ENST00000566009 MYCP01106 439 aaPredicted RBP12.54□□□□□ -0.4
SMPD3-206ENST00000566009 POLKQ9UBT6 870 aa12.54□□□□□ -0.4
SMPD3-206ENST00000566009 STAP2Q9UGK3 403 aa12.54□□□□□ -0.4
SMPD3-206ENST00000566009 HOXA10P31260 410 aaPredicted RBP12.53□□□□□ -0.4
SMPD3-206ENST00000566009 SLC9C1Q4G0N8 1177 aa12.53□□□□□ -0.4
SMPD3-206ENST00000566009 GGA3Q9NZ52 723 aa12.53□□□□□ -0.4
SMPD3-206ENST00000566009 LAMB4A4D0S4 1761 aa12.53□□□□□ -0.4
SMPD3-206ENST00000566009 PPEF1O14829 653 aaPredicted RBP12.52□□□□□ -0.41
SMPD3-206ENST00000566009 A1BGP04217 495 aa12.52□□□□□ -0.41
SMPD3-206ENST00000566009 GTF2E1P29083 439 aaPredicted RBP12.52□□□□□ -0.41
SMPD3-206ENST00000566009 SUPT20HQ8NEM7 779 aa12.52□□□□□ -0.41
SMPD3-206ENST00000566009 SNX27Q96L92 541 aa12.52□□□□□ -0.41
SMPD3-206ENST00000566009 HTATIP2Q9BUP3 242 aa12.52□□□□□ -0.41
SMPD3-206ENST00000566009 NIP7Q9Y221 180 aaKnown RBP eCLIP12.52□□□□□ -0.41
SMPD3-206ENST00000566009 ZNF609O15014 1411 aa12.52□□□□□ -0.41
SMPD3-206ENST00000566009 YDJCA8MPS7 323 aa12.51□□□□□ -0.41
SMPD3-206ENST00000566009 TNNT2P45379 298 aaPredicted RBP12.51□□□□□ -0.41
SMPD3-206ENST00000566009 CAP1Q01518 475 aa12.51□□□□□ -0.41
SMPD3-206ENST00000566009 RPGRQ92834 1020 aaKnown RBP12.51□□□□□ -0.41
SMPD3-206ENST00000566009 CARD11Q9BXL7 1154 aa12.51□□□□□ -0.41
SMPD3-206ENST00000566009 TEX13AQ9BXU3 409 aaPredicted RBP12.51□□□□□ -0.41
SMPD3-206ENST00000566009 RTFDC1Q9BY42 306 aaPredicted RBP12.51□□□□□ -0.41
SMPD3-206ENST00000566009 ZNF652Q9Y2D9 606 aa12.51□□□□□ -0.41
SMPD3-206ENST00000566009 ASTN2O75129 1339 aaPredicted RBP12.51□□□□□ -0.41
SMPD3-206ENST00000566009 RNMTO43148 476 aaKnown RBP12.5□□□□□ -0.41
SMPD3-206ENST00000566009 KIAA2012Q0VF49 1180 aa12.5□□□□□ -0.41
SMPD3-206ENST00000566009 CRAMP1Q96RY5 1269 aa12.5□□□□□ -0.41
SMPD3-206ENST00000566009 TMX4Q9H1E5 349 aaPredicted RBP12.5□□□□□ -0.41
SMPD3-206ENST00000566009 PTCH2Q9Y6C5 1203 aa12.5□□□□□ -0.41
SMPD3-206ENST00000566009 KIF7Q2M1P5 1343 aa12.5□□□□□ -0.41
SMPD3-206ENST00000566009 RPTORQ8N122 1335 aa12.5□□□□□ -0.41
SMPD3-206ENST00000566009 KIF20BQ96Q89 1820 aa12.5□□□□□ -0.41
SMPD3-206ENST00000566009 KIF4BQ2VIQ3 1234 aa12.49□□□□□ -0.41
SMPD3-206ENST00000566009 AEBP1Q8IUX7 1158 aa12.49□□□□□ -0.41
SMPD3-206ENST00000566009 SHISA4Q96DD7 197 aa12.49□□□□□ -0.41
SMPD3-206ENST00000566009 PSMD14O00487 310 aa12.48□□□□□ -0.41
SMPD3-206ENST00000566009 IFNL1Q8IU54 200 aa12.48□□□□□ -0.41
SMPD3-206ENST00000566009 TTC5Q8N0Z6 440 aa12.48□□□□□ -0.41
SMPD3-206ENST00000566009 SYMPKQ92797 1274 aaKnown RBP12.48□□□□□ -0.41
SMPD3-206ENST00000566009 RBM17Q96I25 401 aaKnown RBP12.48□□□□□ -0.41
SMPD3-206ENST00000566009 ZNF496Q96IT1 587 aaPredicted RBP12.48□□□□□ -0.41
SMPD3-206ENST00000566009 ATP6V0A2Q9Y487 856 aa12.48□□□□□ -0.41
SMPD3-206ENST00000566009 ABCC12Q96J65 1359 aa12.47□□□□□ -0.41
SMPD3-206ENST00000566009 SP3Q02447 781 aa12.47□□□□□ -0.41
SMPD3-206ENST00000566009 LRIT3Q3SXY7 679 aa12.47□□□□□ -0.41
SMPD3-206ENST00000566009 ANGEL2Q5VTE6 544 aaKnown RBP12.47□□□□□ -0.41
SMPD3-206ENST00000566009 UBE2Q1Q7Z7E8 422 aa12.47□□□□□ -0.41
SMPD3-206ENST00000566009 NUTM1Q86Y26 1132 aa12.47□□□□□ -0.41
SMPD3-206ENST00000566009 TESK2Q96S53 571 aa12.47□□□□□ -0.41
SMPD3-206ENST00000566009 HEG1Q9ULI3 1381 aa12.46□□□□□ -0.41
SMPD3-206ENST00000566009 TMEM265A0A087WTH1 108 aa12.46□□□□□ -0.41
SMPD3-206ENST00000566009 BMP8BP34820 402 aa12.46□□□□□ -0.41
SMPD3-206ENST00000566009 INHBEP58166 350 aa12.46□□□□□ -0.41
SMPD3-206ENST00000566009 TTLL12Q14166 644 aaPredicted RBP12.46□□□□□ -0.41
SMPD3-206ENST00000566009 SPRYD7Q5W111 196 aa12.46□□□□□ -0.41
SMPD3-206ENST00000566009 SH3TC2Q8TF17 1288 aa12.46□□□□□ -0.41
SMPD3-206ENST00000566009 RPS12P25398 132 aaKnown RBP12.45□□□□□ -0.42
SMPD3-206ENST00000566009 PIP4K2AP48426 406 aaPredicted RBP12.45□□□□□ -0.42
SMPD3-206ENST00000566009 BCAMP50895 628 aa12.45□□□□□ -0.42
SMPD3-206ENST00000566009 MAP3K12Q12852 859 aa12.45□□□□□ -0.42
SMPD3-206ENST00000566009 TCIRG1Q13488 830 aa12.45□□□□□ -0.42
SMPD3-206ENST00000566009 DPP8Q6V1X1 898 aaPredicted RBP12.45□□□□□ -0.42
SMPD3-206ENST00000566009 CARD14Q9BXL6 1004 aa12.45□□□□□ -0.42
SMPD3-206ENST00000566009 UBR2Q8IWV8 1755 aa12.45□□□□□ -0.42
SMPD3-206ENST00000566009 RIC1Q4ADV7 1423 aa12.45□□□□□ -0.42
SMPD3-206ENST00000566009 MANSC4A6NHS7 340 aaPredicted RBP12.44□□□□□ -0.42
SMPD3-206ENST00000566009 TNFRSF10AO00220 468 aa12.44□□□□□ -0.42
SMPD3-206ENST00000566009 IGF2BP3O00425 579 aaKnown RBP eCLIP12.44□□□□□ -0.42
SMPD3-206ENST00000566009 EVI5O60447 810 aa12.44□□□□□ -0.42
SMPD3-206ENST00000566009 PTPN12Q05209 780 aaKnown RBP12.44□□□□□ -0.42
SMPD3-206ENST00000566009 CRHR2Q13324 411 aa12.44□□□□□ -0.42
SMPD3-206ENST00000566009 PRAMEF18Q5VWM3 479 aa12.44□□□□□ -0.42
SMPD3-206ENST00000566009 GUCD1Q96NT3 240 aa12.44□□□□□ -0.42
SMPD3-206ENST00000566009 GDF15Q99988 308 aa12.44□□□□□ -0.42
SMPD3-206ENST00000566009 KDM3BQ7LBC6 1761 aa12.43□□□□□ -0.42
SMPD3-206ENST00000566009 SCARF1Q14162 830 aa12.43□□□□□ -0.42
SMPD3-206ENST00000566009 SULT6B1Q6IMI4 303 aa12.43□□□□□ -0.42
SMPD3-206ENST00000566009 SCAF8Q9UPN6 1271 aaKnown RBP12.43□□□□□ -0.42
SMPD3-206ENST00000566009 SYNGAP1Q96PV0 1343 aa12.42□□□□□ -0.42
SMPD3-206ENST00000566009 RGL2O15211 777 aa12.42□□□□□ -0.42
SMPD3-206ENST00000566009 ARHGEF6Q15052 776 aa12.42□□□□□ -0.42
SMPD3-206ENST00000566009 HLFQ16534 295 aa12.42□□□□□ -0.42
SMPD3-206ENST00000566009 NKX2-3Q8TAU0 364 aa12.42□□□□□ -0.42
SMPD3-206ENST00000566009 NYXQ9GZU5 481 aa12.42□□□□□ -0.42
SMPD3-206ENST00000566009 MTFR1Q15390 333 aa12.41□□□□□ -0.42
SMPD3-206ENST00000566009 ZNF790Q6PG37 636 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms