RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 IRS4O14654 1257 aaPredicted RBP13.97□□□□□ -0.17
VPS39-208ENST00000564994 PPIP5K2O43314 1243 aa13.97□□□□□ -0.17
VPS39-208ENST00000564994 AOC3Q16853 763 aa13.97□□□□□ -0.17
VPS39-208ENST00000564994 CELF1Q92879 486 aaKnown RBP13.97□□□□□ -0.17
VPS39-208ENST00000564994 KLRG1Q96E93 195 aa13.97□□□□□ -0.17
VPS39-208ENST00000564994 HACL1Q9UJ83 578 aa13.97□□□□□ -0.17
VPS39-208ENST00000564994 EPHX2P34913 555 aa13.96□□□□□ -0.17
VPS39-208ENST00000564994 EIF6P56537 245 aaKnown RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 TWISTNBQ3B726 338 aaPredicted RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 DPP8Q6V1X1 898 aaPredicted RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 LDHDQ86WU2 507 aa13.96□□□□□ -0.17
VPS39-208ENST00000564994 MPNDQ8N594 471 aa13.96□□□□□ -0.17
VPS39-208ENST00000564994 ZBTB38Q8NAP3 1195 aaPredicted RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 METTL22Q9BUU2 404 aaPredicted RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 TMX4Q9H1E5 349 aaPredicted RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 SALL2Q9Y467 1007 aaPredicted RBP13.96□□□□□ -0.17
VPS39-208ENST00000564994 GJA3Q9Y6H8 435 aa13.96□□□□□ -0.17
VPS39-208ENST00000564994 FANCIQ9NVI1 1328 aa13.95□□□□□ -0.18
VPS39-208ENST00000564994 G2E3Q7L622 706 aa13.95□□□□□ -0.18
VPS39-208ENST00000564994 NIM1KQ8IY84 436 aa13.95□□□□□ -0.18
VPS39-208ENST00000564994 CCDC191Q8NCU4 936 aa13.95□□□□□ -0.18
VPS39-208ENST00000564994 JARID2Q92833 1246 aaPredicted RBP13.95□□□□□ -0.18
VPS39-208ENST00000564994 VPS33BQ9H267 617 aa13.95□□□□□ -0.18
VPS39-208ENST00000564994 MAP3K2Q9Y2U5 619 aa13.95□□□□□ -0.18
VPS39-208ENST00000564994 MYH3P11055 1940 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 PI4KAP2A4QPH2 592 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 DDX58O95786 925 aaKnown RBP13.94□□□□□ -0.18
VPS39-208ENST00000564994 PCCAP05165 728 aaPredicted RBP13.94□□□□□ -0.18
VPS39-208ENST00000564994 SCNN1DP51172 638 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 EAPPQ56P03 285 aaPredicted RBP13.94□□□□□ -0.18
VPS39-208ENST00000564994 KSR2Q6VAB6 950 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 PI4KAP1Q8N8J0 262 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 JMYQ8N9B5 988 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 SUPT20HQ8NEM7 779 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 CHMP4AQ9BY43 222 aa13.94□□□□□ -0.18
VPS39-208ENST00000564994 CWC25Q9NXE8 425 aaPredicted RBP13.94□□□□□ -0.18
VPS39-208ENST00000564994 PASKQ96RG2 1323 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 ITGBL1O95965 494 aaPredicted RBP13.93□□□□□ -0.18
VPS39-208ENST00000564994 IGKV5-2P06315 115 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 KIAA2012Q0VF49 1180 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 TMC4Q7Z404 712 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 WDR63Q8IWG1 891 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 STK31Q9BXU1 1019 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 SPINK5Q9NQ38 1064 aaPredicted RBP13.93□□□□□ -0.18
VPS39-208ENST00000564994 SEC31BQ9NQW1 1179 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 ZNRF3Q9ULT6 936 aa13.93□□□□□ -0.18
VPS39-208ENST00000564994 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
VPS39-208ENST00000564994 EPS15P42566 896 aa13.92□□□□□ -0.18
VPS39-208ENST00000564994 GPSM2P81274 684 aa13.92□□□□□ -0.18
VPS39-208ENST00000564994 CXCL9Q07325 125 aa13.92□□□□□ -0.18
VPS39-208ENST00000564994 PNMA8AQ86V59 439 aaPredicted RBP13.92□□□□□ -0.18
VPS39-208ENST00000564994 FAM9BQ8IZU0 186 aa13.92□□□□□ -0.18
VPS39-208ENST00000564994 PDE8AO60658 829 aa13.91□□□□□ -0.18
VPS39-208ENST00000564994 VAMP4O75379 141 aa13.91□□□□□ -0.18
VPS39-208ENST00000564994 RPS8P62241 208 aaKnown RBP13.91□□□□□ -0.18
VPS39-208ENST00000564994 CWF19L2Q2TBE0 894 aaKnown RBP13.91□□□□□ -0.18
VPS39-208ENST00000564994 MAP1SQ66K74 1059 aaPredicted RBP13.91□□□□□ -0.18
VPS39-208ENST00000564994 NSFL1CQ9UNZ2 370 aaKnown RBP13.91□□□□□ -0.18
VPS39-208ENST00000564994 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
VPS39-208ENST00000564994 SPEF2Q9C093 1822 aa13.91□□□□□ -0.18
VPS39-208ENST00000564994 CDHR2Q9BYE9 1310 aa13.9□□□□□ -0.18
VPS39-208ENST00000564994 YDJCA8MPS7 323 aa13.9□□□□□ -0.18
VPS39-208ENST00000564994 LMOD1P29536 600 aaPredicted RBP13.9□□□□□ -0.18
VPS39-208ENST00000564994 EXOSC9Q06265 439 aaKnown RBP13.9□□□□□ -0.18
VPS39-208ENST00000564994 CCDC85AQ96PX6 553 aaPredicted RBP13.9□□□□□ -0.18
VPS39-208ENST00000564994 CREBZFQ9NS37 354 aa13.9□□□□□ -0.18
VPS39-208ENST00000564994 POLLQ9UGP5 575 aa13.9□□□□□ -0.18
VPS39-208ENST00000564994 SCN9AQ15858 1988 aa13.89□□□□□ -0.19
VPS39-208ENST00000564994 NEURL1BA8MQ27 555 aa13.89□□□□□ -0.19
VPS39-208ENST00000564994 RAD17O75943 681 aa13.89□□□□□ -0.19
VPS39-208ENST00000564994 FLIIQ13045 1269 aa13.89□□□□□ -0.19
VPS39-208ENST00000564994 CNTROBQ8N137 903 aa13.89□□□□□ -0.19
VPS39-208ENST00000564994 GPR101Q96P66 508 aaPredicted RBP13.89□□□□□ -0.19
VPS39-208ENST00000564994 GPRC5DQ9NZD1 345 aa13.89□□□□□ -0.19
VPS39-208ENST00000564994 RIMBP2O15034 1052 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 HSP90B1P14625 803 aaKnown RBP13.88□□□□□ -0.19
VPS39-208ENST00000564994 GMPSP49915 693 aaPredicted RBP13.88□□□□□ -0.19
VPS39-208ENST00000564994 NEXNQ0ZGT2 675 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 WASHC4Q2M389 1173 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 CCDC152Q4G0S7 254 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 CIAPIN1Q6FI81 312 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 TBC1D16Q8TBP0 767 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 TRPM7Q96QT4 1865 aa13.88□□□□□ -0.19
VPS39-208ENST00000564994 C6orf229H3BNL8 230 aa13.87□□□□□ -0.19
VPS39-208ENST00000564994 H7C1W4 665 aa13.87□□□□□ -0.19
VPS39-208ENST00000564994 CTSWP56202 376 aa13.87□□□□□ -0.19
VPS39-208ENST00000564994 USP50Q70EL3 339 aaPredicted RBP13.87□□□□□ -0.19
VPS39-208ENST00000564994 DBNDD1Q9H9R9 158 aa13.87□□□□□ -0.19
VPS39-208ENST00000564994 ADARB2Q9NS39 739 aaKnown RBP13.87□□□□□ -0.19
VPS39-208ENST00000564994 PODXL2Q9NZ53 605 aa13.87□□□□□ -0.19
VPS39-208ENST00000564994 MKRN1Q9UHC7 482 aaKnown RBP13.87□□□□□ -0.19
VPS39-208ENST00000564994 PSME4Q14997 1843 aa13.86□□□□□ -0.19
VPS39-208ENST00000564994 SHTN1A0MZ66 631 aa13.86□□□□□ -0.19
VPS39-208ENST00000564994 FMR1Q06787 632 aaKnown RBP eCLIP13.86□□□□□ -0.19
VPS39-208ENST00000564994 FKBP5Q13451 457 aaPredicted RBP13.86□□□□□ -0.19
VPS39-208ENST00000564994 TNIP1Q15025 636 aa13.86□□□□□ -0.19
VPS39-208ENST00000564994 TTLL11Q8NHH1 800 aa13.86□□□□□ -0.19
VPS39-208ENST00000564994 KCNQ5Q9NR82 932 aa13.86□□□□□ -0.19
VPS39-208ENST00000564994 ZNF521Q96K83 1311 aa13.86□□□□□ -0.19
VPS39-208ENST00000564994 POLR2AP24928 1970 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms