RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 RTKN2Q8IZC4 609 aa21.97■■□□□ 1.11
USB1-209ENST00000564387 ARHGAP45Q92619 1136 aa21.97■■□□□ 1.11
USB1-209ENST00000564387 SRCIN1Q9C0H9 1055 aa21.97■■□□□ 1.11
USB1-209ENST00000564387 ATP6V0A2Q9Y487 856 aa21.97■■□□□ 1.11
USB1-209ENST00000564387 PPEF1O14829 653 aaPredicted RBP21.96■■□□□ 1.11
USB1-209ENST00000564387 OLFM4Q6UX06 510 aa21.96■■□□□ 1.11
USB1-209ENST00000564387 TMC4Q7Z404 712 aa21.96■■□□□ 1.11
USB1-209ENST00000564387 TTLL11Q8NHH1 800 aa21.96■■□□□ 1.11
USB1-209ENST00000564387 ZNF219Q9P2Y4 722 aaPredicted RBP21.96■■□□□ 1.11
USB1-209ENST00000564387 RTL9Q8NET4 1388 aa21.96■■□□□ 1.11
USB1-209ENST00000564387 TAF1P21675 1872 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 CTSWP56202 376 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 C9orf131Q5VYM1 1079 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 SP8Q8IXZ3 490 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 TAOK3Q9H2K8 898 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 NOB1Q9ULX3 412 aaKnown RBP21.95■■□□□ 1.1
USB1-209ENST00000564387 UTYO14607 1347 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 COL4A1P02462 1669 aa21.95■■□□□ 1.1
USB1-209ENST00000564387 MYH3P11055 1940 aa21.94■■□□□ 1.1
USB1-209ENST00000564387 GRM8O00222 908 aa21.94■■□□□ 1.1
USB1-209ENST00000564387 CSF1RP07333 972 aa21.94■■□□□ 1.1
USB1-209ENST00000564387 FKBP4Q02790 459 aaKnown RBP eCLIP21.94■■□□□ 1.1
USB1-209ENST00000564387 CCDC152Q4G0S7 254 aa21.94■■□□□ 1.1
USB1-209ENST00000564387 SLC4A10Q6U841 1118 aa21.94■■□□□ 1.1
USB1-209ENST00000564387 PSMD1Q99460 953 aa21.94■■□□□ 1.1
USB1-209ENST00000564387 ZC3H4Q9UPT8 1303 aaKnown RBP21.94■■□□□ 1.1
USB1-209ENST00000564387 LRRC37AA6NMS7 1700 aa21.93■■□□□ 1.1
USB1-209ENST00000564387 ZNF784Q8NCA9 323 aaPredicted RBP21.93■■□□□ 1.1
USB1-209ENST00000564387 CELF1Q92879 486 aaKnown RBP21.93■■□□□ 1.1
USB1-209ENST00000564387 KIF16BQ96L93 1317 aa21.93■■□□□ 1.1
USB1-209ENST00000564387 DICER1Q9UPY3 1922 aaKnown RBP21.92■■□□□ 1.1
USB1-209ENST00000564387 SLC51AQ86UW1 340 aa21.92■■□□□ 1.1
USB1-209ENST00000564387 API5Q9BZZ5 524 aaKnown RBP21.92■■□□□ 1.1
USB1-209ENST00000564387 RNF181Q9P0P0 153 aa21.92■■□□□ 1.1
USB1-209ENST00000564387 CCDC88AQ3V6T2 1871 aa21.92■■□□□ 1.1
USB1-209ENST00000564387 BCAR3O75815 825 aa21.91■■□□□ 1.1
USB1-209ENST00000564387 RPS8P62241 208 aaKnown RBP21.91■■□□□ 1.1
USB1-209ENST00000564387 FOXO4P98177 505 aa21.91■■□□□ 1.1
USB1-209ENST00000564387 RTFDC1Q9BY42 306 aaPredicted RBP21.91■■□□□ 1.1
USB1-209ENST00000564387 SEC31BQ9NQW1 1179 aa21.91■■□□□ 1.1
USB1-209ENST00000564387 USP44Q9H0E7 712 aa21.89■■□□□ 1.09
USB1-209ENST00000564387 C9orf78Q9NZ63 289 aaPredicted RBP21.89■■□□□ 1.09
USB1-209ENST00000564387 NBPF7P0C2Y1 421 aaPredicted RBP21.88■■□□□ 1.09
USB1-209ENST00000564387 CCT4P50991 539 aaKnown RBP21.88■■□□□ 1.09
USB1-209ENST00000564387 KAZALD1Q96I82 304 aa21.88■■□□□ 1.09
USB1-209ENST00000564387 GREM2Q9H772 168 aa21.88■■□□□ 1.09
USB1-209ENST00000564387 IPO8O15397 1037 aaKnown RBP21.87■■□□□ 1.09
USB1-209ENST00000564387 EPHA10Q5JZY3 1008 aa21.87■■□□□ 1.09
USB1-209ENST00000564387 VPS33BQ9H267 617 aa21.87■■□□□ 1.09
USB1-209ENST00000564387 LTBP1Q14766 1721 aa21.86■■□□□ 1.09
USB1-209ENST00000564387 INTS3Q68E01 1043 aaKnown RBP21.86■■□□□ 1.09
USB1-209ENST00000564387 ATF7IPQ6VMQ6 1270 aa21.86■■□□□ 1.09
USB1-209ENST00000564387 CDC5LQ99459 802 aaKnown RBP21.86■■□□□ 1.09
USB1-209ENST00000564387 TMX4Q9H1E5 349 aaPredicted RBP21.86■■□□□ 1.09
USB1-209ENST00000564387 ZNF277Q9NRM2 450 aaPredicted RBP21.86■■□□□ 1.09
USB1-209ENST00000564387 TIAM2Q8IVF5 1701 aa21.86■■□□□ 1.09
USB1-209ENST00000564387 TRIM27P14373 513 aa21.85■■□□□ 1.09
USB1-209ENST00000564387 IARSP41252 1262 aaKnown RBP21.85■■□□□ 1.09
USB1-209ENST00000564387 MPNDQ8N594 471 aa21.85■■□□□ 1.09
USB1-209ENST00000564387 CCDC85AQ96PX6 553 aaPredicted RBP21.85■■□□□ 1.09
USB1-209ENST00000564387 DUOX1Q9NRD9 1551 aa21.85■■□□□ 1.09
USB1-209ENST00000564387 RABL6Q3YEC7 729 aaPredicted RBP21.84■■□□□ 1.09
USB1-209ENST00000564387 ANKRD18AQ8IVF6 992 aa21.84■■□□□ 1.09
USB1-209ENST00000564387 SUCLG2Q96I99 432 aa21.84■■□□□ 1.09
USB1-209ENST00000564387 BSDC1Q9NW68 430 aaPredicted RBP21.84■■□□□ 1.09
USB1-209ENST00000564387 PODXL2Q9NZ53 605 aa21.84■■□□□ 1.09
USB1-209ENST00000564387 ITGA6P23229 1130 aa21.83■■□□□ 1.09
USB1-209ENST00000564387 FAM161AQ3B820 660 aa21.83■■□□□ 1.09
USB1-209ENST00000564387 DPP8Q6V1X1 898 aaPredicted RBP21.83■■□□□ 1.09
USB1-209ENST00000564387 SUPT20HQ8NEM7 779 aa21.83■■□□□ 1.09
USB1-209ENST00000564387 COL4A5P29400 1685 aa21.82■■□□□ 1.08
USB1-209ENST00000564387 LMBR1LQ6UX01 489 aa21.82■■□□□ 1.08
USB1-209ENST00000564387 GLTPD2A6NH11 291 aa21.81■■□□□ 1.08
USB1-209ENST00000564387 GPSM2P81274 684 aa21.81■■□□□ 1.08
USB1-209ENST00000564387 ZKSCAN2Q63HK3 967 aa21.81■■□□□ 1.08
USB1-209ENST00000564387 FZD9O00144 591 aa21.8■■□□□ 1.08
USB1-209ENST00000564387 ANKRD44Q8N8A2 993 aa21.8■■□□□ 1.08
USB1-209ENST00000564387 FRAT1Q92837 279 aaPredicted RBP21.8■■□□□ 1.08
USB1-209ENST00000564387 TNNQ9UQP3 1299 aa21.8■■□□□ 1.08
USB1-209ENST00000564387 ANKRD18BA2A2Z9 1011 aa21.79■■□□□ 1.08
USB1-209ENST00000564387 KIAA2012Q0VF49 1180 aa21.79■■□□□ 1.08
USB1-209ENST00000564387 IFIT5Q13325 482 aaKnown RBP21.79■■□□□ 1.08
USB1-209ENST00000564387 POLLQ9UGP5 575 aa21.79■■□□□ 1.08
USB1-209ENST00000564387 MINPP1Q9UNW1 487 aa21.79■■□□□ 1.08
USB1-209ENST00000564387 NSFL1CQ9UNZ2 370 aaKnown RBP21.79■■□□□ 1.08
USB1-209ENST00000564387 TBC1D16Q8TBP0 767 aa21.78■■□□□ 1.08
USB1-209ENST00000564387 BICC1Q9H694 974 aaKnown RBP21.78■■□□□ 1.08
USB1-209ENST00000564387 GPBP1L1Q9HC44 474 aaPredicted RBP21.78■■□□□ 1.08
USB1-209ENST00000564387 KDM2BQ8NHM5 1336 aa21.78■■□□□ 1.08
USB1-209ENST00000564387 IGHMBP2P38935 993 aaKnown RBP21.77■■□□□ 1.08
USB1-209ENST00000564387 PPIP5K2O43314 1243 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 AOC3Q16853 763 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 DPY19L2Q6NUT2 758 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 LARGE2Q8N3Y3 721 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 JDP2Q8WYK2 163 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 XDHP47989 1333 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 SPEF2Q9C093 1822 aa21.76■■□□□ 1.07
USB1-209ENST00000564387 WDR90Q96KV7 1748 aa21.75■■□□□ 1.07
USB1-209ENST00000564387 CCDC57Q2TAC2 916 aa21.75■■□□□ 1.07
USB1-209ENST00000564387 MEIS3Q99687 375 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms