RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 NEURL1BA8MQ27 555 aa17.05■□□□□ 0.32
CLK3-213ENST00000563842 SP8Q8IXZ3 490 aa17.05■□□□□ 0.32
CLK3-213ENST00000563842 LINS1Q8NG48 757 aa17.05■□□□□ 0.32
CLK3-213ENST00000563842 GLTPD2A6NH11 291 aa17.04■□□□□ 0.32
CLK3-213ENST00000563842 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
CLK3-213ENST00000563842 CWF19L2Q2TBE0 894 aaKnown RBP17.04■□□□□ 0.32
CLK3-213ENST00000563842 CCDC152Q4G0S7 254 aa17.04■□□□□ 0.32
CLK3-213ENST00000563842 OLFM4Q6UX06 510 aa17.04■□□□□ 0.32
CLK3-213ENST00000563842 TRMT2AQ8IZ69 625 aaKnown RBP17.04■□□□□ 0.32
CLK3-213ENST00000563842 IARSP41252 1262 aaKnown RBP17.03■□□□□ 0.32
CLK3-213ENST00000563842 SUPT20HQ8NEM7 779 aa17.03■□□□□ 0.32
CLK3-213ENST00000563842 CDCA7LQ96GN5 454 aa17.03■□□□□ 0.32
CLK3-213ENST00000563842 VPS33BQ9H267 617 aa17.03■□□□□ 0.32
CLK3-213ENST00000563842 ZNF277Q9NRM2 450 aaPredicted RBP17.03■□□□□ 0.32
CLK3-213ENST00000563842 H7C1W4 665 aa17.02■□□□□ 0.32
CLK3-213ENST00000563842 SLC34A2O95436 690 aa17.02■□□□□ 0.32
CLK3-213ENST00000563842 GCKRQ14397 625 aa17.02■□□□□ 0.32
CLK3-213ENST00000563842 ALDH1L2Q3SY69 923 aa17.02■□□□□ 0.32
CLK3-213ENST00000563842 JDP2Q8WYK2 163 aa17.02■□□□□ 0.32
CLK3-213ENST00000563842 SNED1Q8TER0 1413 aa17.02■□□□□ 0.31
CLK3-213ENST00000563842 KIF3CO14782 793 aa17.01■□□□□ 0.31
CLK3-213ENST00000563842 C16orf71Q8IYS4 520 aaPredicted RBP17.01■□□□□ 0.31
CLK3-213ENST00000563842 MPNDQ8N594 471 aa17.01■□□□□ 0.31
CLK3-213ENST00000563842 LRRC37AA6NMS7 1700 aa17.01■□□□□ 0.31
CLK3-213ENST00000563842 PTPRCP08575 1304 aa17■□□□□ 0.31
CLK3-213ENST00000563842 RPS8P62241 208 aaKnown RBP17■□□□□ 0.31
CLK3-213ENST00000563842 DPP8Q6V1X1 898 aaPredicted RBP17■□□□□ 0.31
CLK3-213ENST00000563842 UBE3BQ7Z3V4 1068 aa17■□□□□ 0.31
CLK3-213ENST00000563842 MRPL50Q8N5N7 158 aaKnown RBP17■□□□□ 0.31
CLK3-213ENST00000563842 JARID2Q92833 1246 aaPredicted RBP17■□□□□ 0.31
CLK3-213ENST00000563842 NMRK2Q9NPI5 230 aa17■□□□□ 0.31
CLK3-213ENST00000563842 WDR90Q96KV7 1748 aa16.99■□□□□ 0.31
CLK3-213ENST00000563842 F6X3S4 739 aa16.99■□□□□ 0.31
CLK3-213ENST00000563842 CTSWP56202 376 aa16.99■□□□□ 0.31
CLK3-213ENST00000563842 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLK3-213ENST00000563842 BEND3Q5T5X7 828 aa16.99■□□□□ 0.31
CLK3-213ENST00000563842 LARGE2Q8N3Y3 721 aa16.99■□□□□ 0.31
CLK3-213ENST00000563842 CELF1Q92879 486 aaKnown RBP16.99■□□□□ 0.31
CLK3-213ENST00000563842 RTFDC1Q9BY42 306 aaPredicted RBP16.99■□□□□ 0.31
CLK3-213ENST00000563842 RRAGCQ9HB90 399 aa16.99■□□□□ 0.31
CLK3-213ENST00000563842 SCN4AP35499 1836 aa16.98■□□□□ 0.31
CLK3-213ENST00000563842 ALDH1L1O75891 902 aa16.98■□□□□ 0.31
CLK3-213ENST00000563842 TOMM70O94826 608 aa16.98■□□□□ 0.31
CLK3-213ENST00000563842 VEGFAP15692 232 aaPredicted RBP16.98■□□□□ 0.31
CLK3-213ENST00000563842 SSH1Q8WYL5 1049 aa16.98■□□□□ 0.31
CLK3-213ENST00000563842 CDC5LQ99459 802 aaKnown RBP16.98■□□□□ 0.31
CLK3-213ENST00000563842 PLA2G12BQ9BX93 195 aa16.98■□□□□ 0.31
CLK3-213ENST00000563842 PCDH10Q9P2E7 1040 aa16.98■□□□□ 0.31
CLK3-213ENST00000563842 PPIP5K2O43314 1243 aa16.97■□□□□ 0.31
CLK3-213ENST00000563842 EIF6P56537 245 aaKnown RBP16.97■□□□□ 0.31
CLK3-213ENST00000563842 SLC4A10Q6U841 1118 aa16.97■□□□□ 0.31
CLK3-213ENST00000563842 ANKRD18AQ8IVF6 992 aa16.97■□□□□ 0.31
CLK3-213ENST00000563842 TTLL11Q8NHH1 800 aa16.97■□□□□ 0.31
CLK3-213ENST00000563842 SRCIN1Q9C0H9 1055 aa16.97■□□□□ 0.31
CLK3-213ENST00000563842 SMC4Q9NTJ3 1288 aa16.97■□□□□ 0.31
CLK3-213ENST00000563842 SPEF2Q9C093 1822 aa16.96■□□□□ 0.31
CLK3-213ENST00000563842 FZD9O00144 591 aa16.96■□□□□ 0.31
CLK3-213ENST00000563842 NIM1KQ8IY84 436 aa16.96■□□□□ 0.31
CLK3-213ENST00000563842 SEC31BQ9NQW1 1179 aa16.96■□□□□ 0.31
CLK3-213ENST00000563842 C9orf78Q9NZ63 289 aaPredicted RBP16.96■□□□□ 0.31
CLK3-213ENST00000563842 RTL9Q8NET4 1388 aa16.96■□□□□ 0.31
CLK3-213ENST00000563842 GRM8O00222 908 aa16.95■□□□□ 0.3
CLK3-213ENST00000563842 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
CLK3-213ENST00000563842 CCDC85AQ96PX6 553 aaPredicted RBP16.95■□□□□ 0.3
CLK3-213ENST00000563842 NSFL1CQ9UNZ2 370 aaKnown RBP16.95■□□□□ 0.3
CLK3-213ENST00000563842 IQCA1LA6NCM1 817 aa16.94■□□□□ 0.3
CLK3-213ENST00000563842 DDNO94850 711 aaPredicted RBP16.94■□□□□ 0.3
CLK3-213ENST00000563842 CASP7P55210 303 aa16.94■□□□□ 0.3
CLK3-213ENST00000563842 EYA3Q99504 573 aa16.94■□□□□ 0.3
CLK3-213ENST00000563842 BCL2L13Q9BXK5 485 aa16.94■□□□□ 0.3
CLK3-213ENST00000563842 CSF1RP07333 972 aa16.93■□□□□ 0.3
CLK3-213ENST00000563842 IGHMBP2P38935 993 aaKnown RBP16.93■□□□□ 0.3
CLK3-213ENST00000563842 BRPF1P55201 1214 aaPredicted RBP16.93■□□□□ 0.3
CLK3-213ENST00000563842 KIAA2012Q0VF49 1180 aa16.93■□□□□ 0.3
CLK3-213ENST00000563842 AOC3Q16853 763 aa16.93■□□□□ 0.3
CLK3-213ENST00000563842 GPC2Q8N158 579 aa16.93■□□□□ 0.3
CLK3-213ENST00000563842 L3MBTL3Q96JM7 780 aaPredicted RBP16.93■□□□□ 0.3
CLK3-213ENST00000563842 GREM2Q9H772 168 aa16.93■□□□□ 0.3
CLK3-213ENST00000563842 PODXL2Q9NZ53 605 aa16.93■□□□□ 0.3
CLK3-213ENST00000563842 C6orf229H3BNL8 230 aa16.92■□□□□ 0.3
CLK3-213ENST00000563842 WASHC4Q2M389 1173 aa16.92■□□□□ 0.3
CLK3-213ENST00000563842 BSDC1Q9NW68 430 aaPredicted RBP16.92■□□□□ 0.3
CLK3-213ENST00000563842 ANKIB1Q9P2G1 1089 aa16.92■□□□□ 0.3
CLK3-213ENST00000563842 ZNF541Q9H0D2 1346 aa16.92■□□□□ 0.3
CLK3-213ENST00000563842 LTBP1Q14766 1721 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 ITGA6P23229 1130 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 GPSM2P81274 684 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 FSTL1Q12841 308 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 SLC51AQ86UW1 340 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 API5Q9BZZ5 524 aaKnown RBP16.91■□□□□ 0.3
CLK3-213ENST00000563842 ZNRF3Q9ULT6 936 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 COL4A1P02462 1669 aa16.91■□□□□ 0.3
CLK3-213ENST00000563842 DUOX1Q9NRD9 1551 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 ANKRD18BA2A2Z9 1011 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 CAPN15O75808 1086 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 RARSP54136 660 aaKnown RBP16.9■□□□□ 0.3
CLK3-213ENST00000563842 MPHOSPH8Q99549 860 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 ZC3H12CQ9C0D7 883 aaKnown RBP16.9■□□□□ 0.3
CLK3-213ENST00000563842 GGA1Q9UJY5 639 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 XDHP47989 1333 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms