RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 INTS3Q68E01 1043 aaKnown RBP12.4□□□□□ -0.42
CLK3-208ENST00000562626 OLFM4Q6UX06 510 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 SUCLG2Q96I99 432 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 CCDC85AQ96PX6 553 aaPredicted RBP12.4□□□□□ -0.42
CLK3-208ENST00000562626 MEIS3Q99687 375 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 PCDH10Q9P2E7 1040 aa12.4□□□□□ -0.42
CLK3-208ENST00000562626 DUOX1Q9NRD9 1551 aa12.39□□□□□ -0.43
CLK3-208ENST00000562626 H0YIN7 160 aa12.39□□□□□ -0.43
CLK3-208ENST00000562626 FOXO4P98177 505 aa12.39□□□□□ -0.43
CLK3-208ENST00000562626 SNED1Q8TER0 1413 aa12.38□□□□□ -0.43
CLK3-208ENST00000562626 IPO8O15397 1037 aaKnown RBP12.38□□□□□ -0.43
CLK3-208ENST00000562626 PDE8AO60658 829 aa12.38□□□□□ -0.43
CLK3-208ENST00000562626 HOXA10P31260 410 aaPredicted RBP12.38□□□□□ -0.43
CLK3-208ENST00000562626 CCT4P50991 539 aaKnown RBP12.38□□□□□ -0.43
CLK3-208ENST00000562626 SF3B3Q15393 1217 aaKnown RBP12.38□□□□□ -0.43
CLK3-208ENST00000562626 DZIP1LQ8IYY4 767 aaKnown RBP12.38□□□□□ -0.43
CLK3-208ENST00000562626 TTLL11Q8NHH1 800 aa12.38□□□□□ -0.43
CLK3-208ENST00000562626 ZNF622Q969S3 477 aaKnown RBP eCLIP12.38□□□□□ -0.433e-8■□□□□ 10.7
CLK3-208ENST00000562626 NLRP3Q96P20 1036 aa12.38□□□□□ -0.43
CLK3-208ENST00000562626 SEC31BQ9NQW1 1179 aa12.38□□□□□ -0.43
CLK3-208ENST00000562626 ZNF646O15015 1829 aaPredicted RBP12.38□□□□□ -0.43
CLK3-208ENST00000562626 NPR1P16066 1061 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 CTSWP56202 376 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 STYK1Q6J9G0 422 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
CLK3-208ENST00000562626 ANKRD44Q8N8A2 993 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 CELF1Q92879 486 aaKnown RBP12.37□□□□□ -0.43
CLK3-208ENST00000562626 MASTLQ96GX5 879 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 PLA2G12BQ9BX93 195 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 C9orf78Q9NZ63 289 aaPredicted RBP12.37□□□□□ -0.43
CLK3-208ENST00000562626 PIM2Q9P1W9 311 aa12.37□□□□□ -0.43
CLK3-208ENST00000562626 ZNF219Q9P2Y4 722 aaPredicted RBP12.37□□□□□ -0.43
CLK3-208ENST00000562626 RRP1P56182 461 aaKnown RBP12.36□□□□□ -0.43
CLK3-208ENST00000562626 FAM161AQ3B820 660 aa12.36□□□□□ -0.43
CLK3-208ENST00000562626 PRPF40BQ6NWY9 871 aaKnown RBP12.36□□□□□ -0.43
CLK3-208ENST00000562626 RPGRQ92834 1020 aaKnown RBP12.36□□□□□ -0.43
CLK3-208ENST00000562626 GREM2Q9H772 168 aa12.36□□□□□ -0.43
CLK3-208ENST00000562626 BCS1LQ9Y276 419 aa12.36□□□□□ -0.43
CLK3-208ENST00000562626 MYH13Q9UKX3 1938 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 PSME4Q14997 1843 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 CSF1RP07333 972 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 DALRD3Q5D0E6 543 aaKnown RBP12.35□□□□□ -0.43
CLK3-208ENST00000562626 TTLL6Q8N841 843 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 C7orf43Q8WVR3 580 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 BICC1Q9H694 974 aaKnown RBP12.35□□□□□ -0.43
CLK3-208ENST00000562626 COG6Q9Y2V7 657 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 LRRFIP2Q9Y608 721 aaKnown RBP12.35□□□□□ -0.43
CLK3-208ENST00000562626 SCN9AQ15858 1988 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 UTRNP46939 3433 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 COL4A5P29400 1685 aa12.35□□□□□ -0.43
CLK3-208ENST00000562626 RTL9Q8NET4 1388 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 PRELPP51888 382 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 LMBR1LQ6UX01 489 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 ITPRIPQ8IWB1 547 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 FTSJ3Q8IY81 847 aaKnown RBP12.34□□□□□ -0.43
CLK3-208ENST00000562626 CRAMP1Q96RY5 1269 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 C1orf115Q9H7X2 142 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 ARAP2Q8WZ64 1704 aa12.34□□□□□ -0.43
CLK3-208ENST00000562626 ZBTB7BO15156 539 aaPredicted RBP12.33□□□□□ -0.44
CLK3-208ENST00000562626 C21orf2O43822 256 aa12.33□□□□□ -0.44
CLK3-208ENST00000562626 RABL6Q3YEC7 729 aaPredicted RBP12.33□□□□□ -0.44
CLK3-208ENST00000562626 CNKSR1Q969H4 720 aa12.33□□□□□ -0.44
CLK3-208ENST00000562626 RBM17Q96I25 401 aaKnown RBP12.33□□□□□ -0.44
CLK3-208ENST00000562626 ZNF594Q96JF6 807 aaPredicted RBP12.33□□□□□ -0.44
CLK3-208ENST00000562626 PDZRN3Q9UPQ7 1066 aa12.33□□□□□ -0.44
CLK3-208ENST00000562626 PPEF1O14829 653 aaPredicted RBP12.32□□□□□ -0.44
CLK3-208ENST00000562626 UBTFL1P0CB47 393 aaPredicted RBP12.32□□□□□ -0.44
CLK3-208ENST00000562626 GRAPQ13588 217 aa12.32□□□□□ -0.44
CLK3-208ENST00000562626 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
CLK3-208ENST00000562626 GPR162Q16538 588 aa12.32□□□□□ -0.44
CLK3-208ENST00000562626 CCDC152Q4G0S7 254 aa12.32□□□□□ -0.44
CLK3-208ENST00000562626 DDX46Q7L014 1031 aaKnown RBP12.32□□□□□ -0.44
CLK3-208ENST00000562626 KLHDC4Q8TBB5 520 aa12.32□□□□□ -0.44
CLK3-208ENST00000562626 GRAPLQ8TC17 118 aaPredicted RBP12.32□□□□□ -0.44
CLK3-208ENST00000562626 SUPT16HQ9Y5B9 1047 aaKnown RBP12.32□□□□□ -0.44
CLK3-208ENST00000562626 WTIPA6NIX2 430 aaPredicted RBP12.31□□□□□ -0.44
CLK3-208ENST00000562626 NFKBIEO00221 500 aa12.31□□□□□ -0.44
CLK3-208ENST00000562626 ITGA6P23229 1130 aa12.31□□□□□ -0.44
CLK3-208ENST00000562626 RFX5P48382 616 aaPredicted RBP12.31□□□□□ -0.44
CLK3-208ENST00000562626 RASSF7Q02833 373 aa12.31□□□□□ -0.44
CLK3-208ENST00000562626 PDE3AQ14432 1141 aa12.31□□□□□ -0.44
CLK3-208ENST00000562626 CHMP3Q9Y3E7 222 aa12.31□□□□□ -0.44
CLK3-208ENST00000562626 ALDH1B1P30837 517 aa12.3□□□□□ -0.44
CLK3-208ENST00000562626 CRBNQ96SW2 442 aa12.3□□□□□ -0.44
CLK3-208ENST00000562626 MYO5AQ9Y4I1 1855 aaKnown RBP12.29□□□□□ -0.44
CLK3-208ENST00000562626 PNMA6EA0A0J9YXQ4 647 aa12.29□□□□□ -0.44
CLK3-208ENST00000562626 RPS8P62241 208 aaKnown RBP12.29□□□□□ -0.44
CLK3-208ENST00000562626 PUS3Q9BZE2 481 aaKnown RBP12.29□□□□□ -0.44
CLK3-208ENST00000562626 ATP6V0A2Q9Y487 856 aa12.29□□□□□ -0.44
CLK3-208ENST00000562626 GNAI3P08754 354 aa12.28□□□□□ -0.44
CLK3-208ENST00000562626 HSP90B1P14625 803 aaKnown RBP12.28□□□□□ -0.44
CLK3-208ENST00000562626 IRX6P78412 446 aaPredicted RBP12.28□□□□□ -0.44
CLK3-208ENST00000562626 ARHGAP27Q6ZUM4 889 aa12.28□□□□□ -0.44
CLK3-208ENST00000562626 SP8Q8IXZ3 490 aa12.28□□□□□ -0.44
CLK3-208ENST00000562626 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.28□□□□□ -0.44
CLK3-208ENST00000562626 GPR101Q96P66 508 aaPredicted RBP12.28□□□□□ -0.44
CLK3-208ENST00000562626 ZBTB40Q9NUA8 1239 aa12.28□□□□□ -0.44
CLK3-208ENST00000562626 ANKRD18BA2A2Z9 1011 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 SNAP23O00161 211 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 BBOX1O75936 387 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms