RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 EPS15P42566 896 aa13.2□□□□□ -0.3
LDLR-214ENST00000560628 WWC1Q8IX03 1113 aa13.2□□□□□ -0.3
LDLR-214ENST00000560628 SUPT20HQ8NEM7 779 aa13.2□□□□□ -0.3
LDLR-214ENST00000560628 RTFDC1Q9BY42 306 aaPredicted RBP13.2□□□□□ -0.3
LDLR-214ENST00000560628 ITGBL1O95965 494 aaPredicted RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 LMOD1P29536 600 aaPredicted RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 SF3B3Q15393 1217 aaKnown RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 MAP1SQ66K74 1059 aaPredicted RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 PNMA8AQ86V59 439 aaPredicted RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 CELF1Q92879 486 aaKnown RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 MKRN1Q9UHC7 482 aaKnown RBP13.19□□□□□ -0.3
LDLR-214ENST00000560628 SCNN1DP51172 638 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 CXCL9Q07325 125 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 IFFO2Q5TF58 517 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 CNTROBQ8N137 903 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 ZBTB38Q8NAP3 1195 aaPredicted RBP13.18□□□□□ -0.3
LDLR-214ENST00000560628 VPS33BQ9H267 617 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 CREBZFQ9NS37 354 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 ZNRF3Q9ULT6 936 aa13.18□□□□□ -0.3
LDLR-214ENST00000560628 PASKQ96RG2 1323 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 RAD17O75943 681 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 DDX58O95786 925 aaKnown RBP13.17□□□□□ -0.3
LDLR-214ENST00000560628 KIAA2012Q0VF49 1180 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 CCDC27Q2M243 656 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 METTL22Q9BUU2 404 aaPredicted RBP13.17□□□□□ -0.3
LDLR-214ENST00000560628 CHMP4AQ9BY43 222 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 NSFL1CQ9UNZ2 370 aaKnown RBP13.17□□□□□ -0.3
LDLR-214ENST00000560628 MAP3K2Q9Y2U5 619 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 ANKRD36CQ5JPF3 1778 aa13.17□□□□□ -0.3
LDLR-214ENST00000560628 SCN4AP35499 1836 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 C6orf229H3BNL8 230 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 RIMBP2O15034 1052 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 RPS8P62241 208 aaKnown RBP13.16□□□□□ -0.3
LDLR-214ENST00000560628 GPSM2P81274 684 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 TWISTNBQ3B726 338 aaPredicted RBP13.16□□□□□ -0.3
LDLR-214ENST00000560628 G2E3Q7L622 706 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 TMC4Q7Z404 712 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 CCDC191Q8NCU4 936 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 CCDC85AQ96PX6 553 aaPredicted RBP13.16□□□□□ -0.3
LDLR-214ENST00000560628 STK31Q9BXU1 1019 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 SEC31BQ9NQW1 1179 aa13.16□□□□□ -0.3
LDLR-214ENST00000560628 CWC25Q9NXE8 425 aaPredicted RBP13.16□□□□□ -0.3
LDLR-214ENST00000560628 TAF1P21675 1872 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 PI4KAP2A4QPH2 592 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 TMEM88BA6NKF7 163 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 SLC4A2P04920 1241 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 PCCAP05165 728 aaPredicted RBP13.15□□□□□ -0.3
LDLR-214ENST00000560628 GMPSP49915 693 aaPredicted RBP13.15□□□□□ -0.3
LDLR-214ENST00000560628 FMR1Q06787 632 aaKnown RBP eCLIP13.15□□□□□ -0.3
LDLR-214ENST00000560628 CIAPIN1Q6FI81 312 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 KSR2Q6VAB6 950 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 PI4KAP1Q8N8J0 262 aa13.15□□□□□ -0.3
LDLR-214ENST00000560628 LAMB2P55268 1798 aa13.15□□□□□ -0.31
LDLR-214ENST00000560628 YDJCA8MPS7 323 aa13.14□□□□□ -0.31
LDLR-214ENST00000560628 PDE8AO60658 829 aa13.14□□□□□ -0.31
LDLR-214ENST00000560628 WASHC4Q2M389 1173 aa13.14□□□□□ -0.31
LDLR-214ENST00000560628 GPR101Q96P66 508 aaPredicted RBP13.14□□□□□ -0.31
LDLR-214ENST00000560628 BCL2L13Q9BXK5 485 aa13.14□□□□□ -0.31
LDLR-214ENST00000560628 GPRC5DQ9NZD1 345 aa13.14□□□□□ -0.31
LDLR-214ENST00000560628 POLLQ9UGP5 575 aa13.14□□□□□ -0.31
LDLR-214ENST00000560628 IGKV5-2P06315 115 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 HSPA1AP0DMV8 641 aaKnown RBP13.13□□□□□ -0.31
LDLR-214ENST00000560628 HSPA1BP0DMV9 641 aaKnown RBP13.13□□□□□ -0.31
LDLR-214ENST00000560628 HSP90B1P14625 803 aaKnown RBP13.13□□□□□ -0.31
LDLR-214ENST00000560628 TNIP1Q15025 636 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 DOK7Q18PE1 504 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 CCDC152Q4G0S7 254 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 COL13A1Q5TAT6 717 aaPredicted RBP13.13□□□□□ -0.31
LDLR-214ENST00000560628 USP50Q70EL3 339 aaPredicted RBP13.13□□□□□ -0.31
LDLR-214ENST00000560628 FAM9BQ8IZU0 186 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 DBNDD1Q9H9R9 158 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 ADARB2Q9NS39 739 aaKnown RBP13.13□□□□□ -0.31
LDLR-214ENST00000560628 IL16Q14005 1332 aa13.13□□□□□ -0.31
LDLR-214ENST00000560628 SHTN1A0MZ66 631 aa13.12□□□□□ -0.31
LDLR-214ENST00000560628 TRAF5O00463 557 aa13.12□□□□□ -0.31
LDLR-214ENST00000560628 CWF19L2Q2TBE0 894 aaKnown RBP13.12□□□□□ -0.31
LDLR-214ENST00000560628 TBC1D16Q8TBP0 767 aa13.12□□□□□ -0.31
LDLR-214ENST00000560628 KCNQ5Q9NR82 932 aa13.12□□□□□ -0.31
LDLR-214ENST00000560628 ZBTB12Q9Y330 459 aaPredicted RBP13.12□□□□□ -0.31
LDLR-214ENST00000560628 DDX60Q8IY21 1712 aaKnown RBP13.12□□□□□ -0.31
LDLR-214ENST00000560628 LTBP1Q14766 1721 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 VEGFBP49765 207 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 EXOSC9Q06265 439 aaKnown RBP13.11□□□□□ -0.31
LDLR-214ENST00000560628 NEXNQ0ZGT2 675 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 NCBP3Q53F19 620 aaKnown RBP13.11□□□□□ -0.31
LDLR-214ENST00000560628 WDR63Q8IWG1 891 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 ANKIB1Q9P2G1 1089 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 CNOT7Q9UIV1 285 aaKnown RBP13.11□□□□□ -0.31
LDLR-214ENST00000560628 COL4A1P02462 1669 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 FANCIQ9NVI1 1328 aa13.11□□□□□ -0.31
LDLR-214ENST00000560628 CNTNAP1P78357 1384 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 NEURL1BA8MQ27 555 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 PSMD14O00487 310 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 VAMP4O75379 141 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 HIRAP54198 1017 aaPredicted RBP13.1□□□□□ -0.31
LDLR-214ENST00000560628 DEFB115Q30KQ5 88 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 ANKRD18AQ8IVF6 992 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 EYA3Q99504 573 aa13.1□□□□□ -0.31
LDLR-214ENST00000560628 ZC3H12CQ9C0D7 883 aaKnown RBP13.1□□□□□ -0.31
LDLR-214ENST00000560628 SPINK5Q9NQ38 1064 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms