RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 SPATA31A5Q5VU36 1347 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 SPATA31A7Q8IWB4 1347 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 GPT2Q8TD30 523 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 MAP4K1Q92918 833 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 JAKMIP1Q96N16 626 aaKnown RBP13.3□□□□□ -0.28
SPG11-217ENST00000559511 RBM8AQ9Y5S9 174 aaKnown RBP13.3□□□□□ -0.28
SPG11-217ENST00000559511 RPAP1Q9BWH6 1393 aaPredicted RBP13.3□□□□□ -0.28
SPG11-217ENST00000559511 MED23Q9ULK4 1368 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 ATP5JP18859 108 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 PRIM1P49642 420 aaKnown RBP13.3□□□□□ -0.28
SPG11-217ENST00000559511 SYTL4Q96C24 671 aaPredicted RBP13.3□□□□□ -0.28
SPG11-217ENST00000559511 LIMCH1Q9UPQ0 1083 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 NDUFB9Q9Y6M9 179 aa13.3□□□□□ -0.28
SPG11-217ENST00000559511 LARGE1O95461 756 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 STARD3NLO95772 234 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 DDB1Q16531 1140 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 CREB3L3Q68CJ9 461 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 CAVIN1Q6NZI2 390 aaKnown RBP13.29□□□□□ -0.28
SPG11-217ENST00000559511 CCDC191Q8NCU4 936 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 DBNDD2Q9BQY9 259 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 ZSWIM6Q9HCJ5 1215 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 CHMP3Q9Y3E7 222 aa13.29□□□□□ -0.28
SPG11-217ENST00000559511 NCLP19338 710 aaKnown RBP13.28□□□□□ -0.28
SPG11-217ENST00000559511 ZNF589Q86UQ0 364 aaPredicted RBP13.28□□□□□ -0.28
SPG11-217ENST00000559511 TM6SF1Q9BZW5 370 aa13.28□□□□□ -0.28
SPG11-217ENST00000559511 ZNF330Q9Y3S2 320 aaPredicted RBP13.28□□□□□ -0.28
SPG11-217ENST00000559511 MYH3P11055 1940 aa13.28□□□□□ -0.28
SPG11-217ENST00000559511 UBAP1LF5GYI3 381 aa13.28□□□□□ -0.28
SPG11-217ENST00000559511 CYP19A1P11511 503 aaPredicted RBP13.28□□□□□ -0.28
SPG11-217ENST00000559511 COL9A3Q14050 684 aaPredicted RBP13.28□□□□□ -0.28
SPG11-217ENST00000559511 VPS53Q5VIR6 699 aa13.28□□□□□ -0.28
SPG11-217ENST00000559511 ATG9AQ7Z3C6 839 aa13.28□□□□□ -0.28
SPG11-217ENST00000559511 ISCA1Q9BUE6 129 aa13.28□□□□□ -0.28
SPG11-217ENST00000559511 JCADQ9P266 1359 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 SLC27A2O14975 620 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 KCNJ4P48050 445 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 TCIRG1Q13488 830 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 ZSCAN23Q3MJ62 389 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 MARCH10Q8NA82 808 aaPredicted RBP13.27□□□□□ -0.28
SPG11-217ENST00000559511 PDRG1Q9NUG6 133 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 NSFL1CQ9UNZ2 370 aaKnown RBP13.27□□□□□ -0.28
SPG11-217ENST00000559511 CYP46A1Q9Y6A2 500 aa13.27□□□□□ -0.28
SPG11-217ENST00000559511 CHGBP05060 677 aa13.27□□□□□ -0.29
SPG11-217ENST00000559511 ZKSCAN1P17029 563 aaPredicted RBP13.27□□□□□ -0.29
SPG11-217ENST00000559511 BARGINQ6ZT62 677 aa13.27□□□□□ -0.29
SPG11-217ENST00000559511 TAF6LQ9Y6J9 622 aa13.27□□□□□ -0.29
SPG11-217ENST00000559511 MYH14Q7Z406 1995 aaKnown RBP13.26□□□□□ -0.29
SPG11-217ENST00000559511 DNAJC2Q99543 621 aaKnown RBP13.26□□□□□ -0.29
SPG11-217ENST00000559511 HAUS7Q99871 368 aa13.26□□□□□ -0.29
SPG11-217ENST00000559511 RBM27Q9P2N5 1060 aaKnown RBP13.26□□□□□ -0.29
SPG11-217ENST00000559511 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
SPG11-217ENST00000559511 CICQ96RK0 1608 aaPredicted RBP13.26□□□□□ -0.29
SPG11-217ENST00000559511 WDR33Q9C0J8 1336 aaKnown RBP13.26□□□□□ -0.29
SPG11-217ENST00000559511 ZNF609O15014 1411 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 ZNF445P59923 1031 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 FOXD4L6Q3SYB3 417 aaPredicted RBP13.25□□□□□ -0.29
SPG11-217ENST00000559511 FOXD4L3Q6VB84 417 aaPredicted RBP13.25□□□□□ -0.29
SPG11-217ENST00000559511 KIF6Q6ZMV9 814 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 ZNF594Q96JF6 807 aaPredicted RBP13.25□□□□□ -0.29
SPG11-217ENST00000559511 RREB1Q92766 1687 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 MAP3K15Q6ZN16 1313 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 TAF5LO75529 589 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 ST3GAL1Q11201 340 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 TRIM28Q13263 835 aaKnown RBP13.25□□□□□ -0.29
SPG11-217ENST00000559511 LRRC24Q50LG9 513 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 FAM43AQ8N2R8 423 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 ZBTB1Q9Y2K1 713 aa13.25□□□□□ -0.29
SPG11-217ENST00000559511 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.25□□□□□ -0.29
SPG11-217ENST00000559511 DTNBO60941 627 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 ME3Q16798 604 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 CCDC83Q8IWF9 413 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 ACSBG1Q96GR2 724 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 TMEM63CQ9P1W3 806 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 RFX7Q2KHR2 1363 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 SYT1P21579 422 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 TIMM10P62072 90 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 HLFQ16534 295 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 GIGYF2Q6Y7W6 1299 aaKnown RBP13.24□□□□□ -0.29
SPG11-217ENST00000559511 DDX46Q7L014 1031 aaKnown RBP13.24□□□□□ -0.29
SPG11-217ENST00000559511 SEC62Q99442 399 aaKnown RBP13.24□□□□□ -0.29
SPG11-217ENST00000559511 SMC3Q9UQE7 1217 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 BCL9LQ86UU0 1499 aa13.24□□□□□ -0.29
SPG11-217ENST00000559511 IL15P40933 162 aaPredicted RBP13.23□□□□□ -0.29
SPG11-217ENST00000559511 CCDC129Q6ZRS4 1044 aa13.23□□□□□ -0.29
SPG11-217ENST00000559511 NEUROD6Q96NK8 337 aa13.23□□□□□ -0.29
SPG11-217ENST00000559511 GDPD2Q9HCC8 539 aa13.23□□□□□ -0.29
SPG11-217ENST00000559511 SH2B1Q9NRF2 756 aaPredicted RBP13.23□□□□□ -0.29
SPG11-217ENST00000559511 TPCN1Q9ULQ1 816 aa13.23□□□□□ -0.29
SPG11-217ENST00000559511 LAMA4Q16363 1823 aa13.23□□□□□ -0.29
SPG11-217ENST00000559511 COL5A3P25940 1745 aaPredicted RBP13.23□□□□□ -0.29
SPG11-217ENST00000559511 EYA2O00167 538 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 STX6O43752 255 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 ZSCAN22P10073 491 aaPredicted RBP13.22□□□□□ -0.29
SPG11-217ENST00000559511 RNF20Q5VTR2 975 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 USPL1Q5W0Q7 1092 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 ZSCAN31Q96LW9 406 aaPredicted RBP13.22□□□□□ -0.29
SPG11-217ENST00000559511 TCEANC2Q96MN5 208 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 PUS3Q9BZE2 481 aaKnown RBP13.22□□□□□ -0.29
SPG11-217ENST00000559511 GPR108Q9NPR9 543 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 A0A0G2JS52 829 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms