RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TSPYL6Q8N831 410 aa11.01□□□□□ -0.65
USP3-208ENST00000558285 PSMD1Q99460 953 aa11.01□□□□□ -0.65
USP3-208ENST00000558285 PHAXQ9H814 394 aaKnown RBP11.01□□□□□ -0.65
USP3-208ENST00000558285 PI4KAP2A4QPH2 592 aa11□□□□□ -0.65
USP3-208ENST00000558285 VAMP4O75379 141 aa11□□□□□ -0.65
USP3-208ENST00000558285 GRAPQ13588 217 aa11□□□□□ -0.65
USP3-208ENST00000558285 PI4KAP1Q8N8J0 262 aa11□□□□□ -0.65
USP3-208ENST00000558285 GRAPLQ8TC17 118 aaPredicted RBP11□□□□□ -0.65
USP3-208ENST00000558285 ATP6V0A2Q9Y487 856 aa11□□□□□ -0.65
USP3-208ENST00000558285 ANKRD36CQ5JPF3 1778 aa11□□□□□ -0.65
USP3-208ENST00000558285 ANKRD31Q8N7Z5 1873 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 IQCA1LA6NCM1 817 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 PDE8AO60658 829 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 HCLS1P14317 486 aaPredicted RBP10.99□□□□□ -0.65
USP3-208ENST00000558285 RASSF7Q02833 373 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 SF3B3Q15393 1217 aaKnown RBP10.99□□□□□ -0.65
USP3-208ENST00000558285 SP8Q8IXZ3 490 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 LINS1Q8NG48 757 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 DNAAF4Q8WXU2 420 aa10.99□□□□□ -0.65
USP3-208ENST00000558285 CDC5LQ99459 802 aaKnown RBP10.99□□□□□ -0.65
USP3-208ENST00000558285 GLTPD2A6NH11 291 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 NFKBIEO00221 500 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 VEGFAP15692 232 aaPredicted RBP10.98□□□□□ -0.65
USP3-208ENST00000558285 EIF6P56537 245 aaKnown RBP10.98□□□□□ -0.65
USP3-208ENST00000558285 C1QTNF8P60827 252 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 DPP8Q6V1X1 898 aaPredicted RBP10.98□□□□□ -0.65
USP3-208ENST00000558285 FAM89AQ96GI7 184 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 HDAC5Q9UQL6 1122 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 CDHR2Q9BYE9 1310 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 SENP3-EIF4A1A0A087X0R7 540 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 TOMM70O94826 608 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 IARSP41252 1262 aaKnown RBP10.98□□□□□ -0.65
USP3-208ENST00000558285 NIM1KQ8IY84 436 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 SYNE4Q8N205 404 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 C7orf43Q8WVR3 580 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 EYA3Q99504 573 aa10.98□□□□□ -0.65
USP3-208ENST00000558285 PTPRCP08575 1304 aa10.97□□□□□ -0.65
USP3-208ENST00000558285 ARFGEF2Q9Y6D5 1785 aa10.97□□□□□ -0.65
USP3-208ENST00000558285 COL11A2P13942 1736 aaPredicted RBP10.97□□□□□ -0.65
USP3-208ENST00000558285 LARGE2Q8N3Y3 721 aa10.97□□□□□ -0.65
USP3-208ENST00000558285 MPNDQ8N594 471 aa10.97□□□□□ -0.65
USP3-208ENST00000558285 ABCC4O15439 1325 aa10.97□□□□□ -0.65
USP3-208ENST00000558285 ZNF521Q96K83 1311 aa10.97□□□□□ -0.65
USP3-208ENST00000558285 G3V3G9 751 aa10.96□□□□□ -0.65
USP3-208ENST00000558285 ALDH1L2Q3SY69 923 aa10.96□□□□□ -0.65
USP3-208ENST00000558285 DCAF8Q5TAQ9 597 aa10.96□□□□□ -0.65
USP3-208ENST00000558285 CACNA1FO60840 1977 aa10.96□□□□□ -0.66
USP3-208ENST00000558285 NEURL1BA8MQ27 555 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 TCERG1O14776 1098 aaKnown RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 ALDH1L1O75891 902 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 LMOD1P29536 600 aaPredicted RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 RPS8P62241 208 aaKnown RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 SLFN5Q08AF3 891 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 FSTL1Q12841 308 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 ANKRD18AQ8IVF6 992 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 RBM46Q8TBY0 533 aaKnown RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 TSHZ2Q9NRE2 1034 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 C9orf78Q9NZ63 289 aaPredicted RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 PPIP5K2O43314 1243 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 IGHMBP2P38935 993 aaKnown RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 RTL5Q5HYW3 569 aaPredicted RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 SMC1BQ8NDV3 1235 aa10.95□□□□□ -0.66
USP3-208ENST00000558285 ZNF277Q9NRM2 450 aaPredicted RBP10.95□□□□□ -0.66
USP3-208ENST00000558285 CTSWP56202 376 aa10.94□□□□□ -0.66
USP3-208ENST00000558285 GCKRQ14397 625 aa10.94□□□□□ -0.66
USP3-208ENST00000558285 UBE3BQ7Z3V4 1068 aa10.94□□□□□ -0.66
USP3-208ENST00000558285 SRCIN1Q9C0H9 1055 aa10.94□□□□□ -0.66
USP3-208ENST00000558285 ANKIB1Q9P2G1 1089 aa10.94□□□□□ -0.66
USP3-208ENST00000558285 IPO8O15397 1037 aaKnown RBP10.93□□□□□ -0.66
USP3-208ENST00000558285 TNIP1Q15025 636 aa10.93□□□□□ -0.66
USP3-208ENST00000558285 SLC4A10Q6U841 1118 aa10.93□□□□□ -0.66
USP3-208ENST00000558285 PNMA8AQ86V59 439 aaPredicted RBP10.93□□□□□ -0.66
USP3-208ENST00000558285 SLX4Q8IY92 1834 aa10.93□□□□□ -0.66
USP3-208ENST00000558285 GPC2Q8N158 579 aa10.93□□□□□ -0.66
USP3-208ENST00000558285 MPHOSPH8Q99549 860 aa10.93□□□□□ -0.66
USP3-208ENST00000558285 RTFDC1Q9BY42 306 aaPredicted RBP10.93□□□□□ -0.66
USP3-208ENST00000558285 SMC4Q9NTJ3 1288 aa10.93□□□□□ -0.66
USP3-208ENST00000558285 NSFL1CQ9UNZ2 370 aaKnown RBP10.93□□□□□ -0.66
USP3-208ENST00000558285 SUPT16HQ9Y5B9 1047 aaKnown RBP10.93□□□□□ -0.66
USP3-208ENST00000558285 TNRC6CQ9HCJ0 1690 aaKnown RBP10.93□□□□□ -0.66
USP3-208ENST00000558285 RTL9Q8NET4 1388 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 KIF16BQ96L93 1317 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 VASPP50552 380 aaPredicted RBP10.92□□□□□ -0.66
USP3-208ENST00000558285 PLA2G12BQ9BX93 195 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 API5Q9BZZ5 524 aaKnown RBP10.92□□□□□ -0.66
USP3-208ENST00000558285 RRAGCQ9HB90 399 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 FER1L6Q2WGJ9 1857 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 C6orf229H3BNL8 230 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 H7C1W4 665 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 KIF3CO14782 793 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 IGKV5-2P06315 115 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 PRKAR2AP13861 404 aaKnown RBP10.92□□□□□ -0.66
USP3-208ENST00000558285 HNRNPUQ00839 825 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP3-208ENST00000558285 WASHC4Q2M389 1173 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 CWF19L2Q2TBE0 894 aaKnown RBP10.92□□□□□ -0.66
USP3-208ENST00000558285 TAF7LQ5H9L4 462 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 C3orf67Q6ZVT6 689 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 G2E3Q7L622 706 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 MIER1Q8N108 512 aa10.92□□□□□ -0.66
USP3-208ENST00000558285 ZC3H12CQ9C0D7 883 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms