RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 BCL2L13Q9BXK5 485 aa16.47■□□□□ 0.23
SHMT2-230ENST00000557427 ATP6V0A2Q9Y487 856 aa16.47■□□□□ 0.23
SHMT2-230ENST00000557427 MKI67P46013 3256 aaKnown RBP16.47■□□□□ 0.23
SHMT2-230ENST00000557427 UBN2Q6ZU65 1347 aa16.46■□□□□ 0.23
SHMT2-230ENST00000557427 POLR2AP24928 1970 aaKnown RBP16.46■□□□□ 0.23
SHMT2-230ENST00000557427 YDJCA8MPS7 323 aa16.46■□□□□ 0.23
SHMT2-230ENST00000557427 SLC10A3P09131 477 aa16.46■□□□□ 0.23
SHMT2-230ENST00000557427 SAMD7Q7Z3H4 446 aa16.46■□□□□ 0.23
SHMT2-230ENST00000557427 PHACTR3Q96KR7 559 aa16.46■□□□□ 0.23
SHMT2-230ENST00000557427 ADM5C9JUS6 153 aa16.45■□□□□ 0.22
SHMT2-230ENST00000557427 PRKAR2BP31323 418 aa16.45■□□□□ 0.22
SHMT2-230ENST00000557427 MICALL2Q8IY33 904 aa16.45■□□□□ 0.22
SHMT2-230ENST00000557427 C2orf69Q8N8R5 385 aa16.45■□□□□ 0.22
SHMT2-230ENST00000557427 ZBTB12Q9Y330 459 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-230ENST00000557427 NUP98P52948 1817 aa16.45■□□□□ 0.22
SHMT2-230ENST00000557427 GPTP24298 496 aa16.44■□□□□ 0.22
SHMT2-230ENST00000557427 KIAA2012Q0VF49 1180 aa16.44■□□□□ 0.22
SHMT2-230ENST00000557427 TNIP1Q15025 636 aa16.44■□□□□ 0.22
SHMT2-230ENST00000557427 KRT26Q7Z3Y9 468 aa16.44■□□□□ 0.22
SHMT2-230ENST00000557427 NGEFQ8N5V2 710 aa16.44■□□□□ 0.22
SHMT2-230ENST00000557427 COL3A1P02461 1466 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-230ENST00000557427 ERVV-1B6SEH8 477 aa16.43■□□□□ 0.22
SHMT2-230ENST00000557427 H7C1D1 291 aa16.43■□□□□ 0.22
SHMT2-230ENST00000557427 NTSR2O95665 410 aa16.43■□□□□ 0.22
SHMT2-230ENST00000557427 FXR1P51114 621 aaKnown RBP eCLIP16.43■□□□□ 0.22
SHMT2-230ENST00000557427 PKN2Q16513 984 aaKnown RBP16.43■□□□□ 0.22
SHMT2-230ENST00000557427 ZNF296Q8WUU4 475 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-230ENST00000557427 RSPH6AQ9H0K4 717 aa16.43■□□□□ 0.22
SHMT2-230ENST00000557427 TBC1D10BQ4KMP7 808 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-230ENST00000557427 TTLL7Q6ZT98 887 aa16.42■□□□□ 0.22
SHMT2-230ENST00000557427 SUPT20HQ8NEM7 779 aa16.42■□□□□ 0.22
SHMT2-230ENST00000557427 ABCC4O15439 1325 aa16.42■□□□□ 0.22
SHMT2-230ENST00000557427 MAP3K15Q6ZN16 1313 aa16.42■□□□□ 0.22
SHMT2-230ENST00000557427 IBTKQ9P2D0 1353 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-230ENST00000557427 TBC1D8O95759 1140 aa16.41■□□□□ 0.22
SHMT2-230ENST00000557427 DPP8Q6V1X1 898 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-230ENST00000557427 MCM10Q7L590 875 aa16.41■□□□□ 0.22
SHMT2-230ENST00000557427 RASAL3Q86YV0 1011 aa16.41■□□□□ 0.22
SHMT2-230ENST00000557427 ZNF34Q8IZ26 560 aa16.41■□□□□ 0.22
SHMT2-230ENST00000557427 MPNDQ8N594 471 aa16.4■□□□□ 0.22
SHMT2-230ENST00000557427 DPF2Q92785 391 aa16.4■□□□□ 0.22
SHMT2-230ENST00000557427 SP8Q8IXZ3 490 aa16.39■□□□□ 0.21
SHMT2-230ENST00000557427 HDAC9Q9UKV0 1011 aa16.39■□□□□ 0.21
SHMT2-230ENST00000557427 ASTN2O75129 1339 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-230ENST00000557427 DUOX1Q9NRD9 1551 aa16.38■□□□□ 0.21
SHMT2-230ENST00000557427 PSMD14O00487 310 aa16.38■□□□□ 0.21
SHMT2-230ENST00000557427 DCTN1Q14203 1278 aa16.38■□□□□ 0.21
SHMT2-230ENST00000557427 RALBP1Q15311 655 aa16.38■□□□□ 0.21
SHMT2-230ENST00000557427 RBM26Q5T8P6 1007 aaKnown RBP16.38■□□□□ 0.21
SHMT2-230ENST00000557427 DCPSQ96C86 337 aaKnown RBP16.38■□□□□ 0.21
SHMT2-230ENST00000557427 NLRP3Q96P20 1036 aa16.38■□□□□ 0.21
SHMT2-230ENST00000557427 TMX4Q9H1E5 349 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-230ENST00000557427 ZBTB3Q9H5J0 574 aa16.38■□□□□ 0.21
SHMT2-230ENST00000557427 SLC10A5Q5PT55 438 aa16.37■□□□□ 0.21
SHMT2-230ENST00000557427 FBXO46Q6PJ61 603 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-230ENST00000557427 REM2Q8IYK8 340 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-230ENST00000557427 KCNQ5Q9NR82 932 aa16.37■□□□□ 0.21
SHMT2-230ENST00000557427 BBOX1O75936 387 aa16.36■□□□□ 0.21
SHMT2-230ENST00000557427 RTF1Q92541 710 aaKnown RBP16.36■□□□□ 0.21
SHMT2-230ENST00000557427 CDCA5Q96FF9 252 aa16.36■□□□□ 0.21
SHMT2-230ENST00000557427 MIS18AQ9NYP9 233 aa16.36■□□□□ 0.21
SHMT2-230ENST00000557427 HTTP42858 3142 aa16.35■□□□□ 0.21
SHMT2-230ENST00000557427 POTEFA5A3E0 1075 aa16.35■□□□□ 0.21
SHMT2-230ENST00000557427 MRS2Q9HD23 443 aa16.35■□□□□ 0.21
SHMT2-230ENST00000557427 RRP7AQ9Y3A4 280 aaKnown RBP16.35■□□□□ 0.21
SHMT2-230ENST00000557427 SZT2Q5T011 3432 aa16.35■□□□□ 0.21
SHMT2-230ENST00000557427 LAMB4A4D0S4 1761 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 GPR25O00155 361 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 NEFMP07197 916 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 CCDC184Q52MB2 194 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 GIGYF2Q6Y7W6 1299 aaKnown RBP16.34■□□□□ 0.21
SHMT2-230ENST00000557427 KIF6Q6ZMV9 814 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 MOB2Q70IA6 237 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 R3HDMLQ9H3Y0 253 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 DBNDD1Q9H9R9 158 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 GGA3Q9NZ52 723 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 RTL9Q8NET4 1388 aa16.34■□□□□ 0.21
SHMT2-230ENST00000557427 TAF1P21675 1872 aa16.33■□□□□ 0.21
SHMT2-230ENST00000557427 MYL6BP14649 208 aa16.33■□□□□ 0.2
SHMT2-230ENST00000557427 PPP1R42Q7Z4L9 355 aa16.33■□□□□ 0.2
SHMT2-230ENST00000557427 LAMB2P55268 1798 aa16.33■□□□□ 0.2
SHMT2-230ENST00000557427 BRCA2P51587 3418 aa16.32■□□□□ 0.2
SHMT2-230ENST00000557427 KIF4BQ2VIQ3 1234 aa16.32■□□□□ 0.2
SHMT2-230ENST00000557427 NOM1Q5C9Z4 860 aaKnown RBP16.32■□□□□ 0.2
SHMT2-230ENST00000557427 SULF1Q8IWU6 871 aa16.32■□□□□ 0.2
SHMT2-230ENST00000557427 CENPFP49454 3210 aa16.31■□□□□ 0.2
SHMT2-230ENST00000557427 TM4SF4P48230 202 aa16.31■□□□□ 0.2
SHMT2-230ENST00000557427 TAF7Q15545 349 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-230ENST00000557427 UTP14AQ9BVJ6 771 aaKnown RBP16.31■□□□□ 0.2
SHMT2-230ENST00000557427 COLQQ9Y215 455 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-230ENST00000557427 MYBBP1AQ9BQG0 1328 aaKnown RBP16.3■□□□□ 0.2
SHMT2-230ENST00000557427 HCLS1P14317 486 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-230ENST00000557427 RPS12P25398 132 aaKnown RBP16.3■□□□□ 0.2
SHMT2-230ENST00000557427 GRAPQ13588 217 aa16.3■□□□□ 0.2
SHMT2-230ENST00000557427 WASHC4Q2M389 1173 aa16.3■□□□□ 0.2
SHMT2-230ENST00000557427 PARP10Q53GL7 1025 aa16.3■□□□□ 0.2
SHMT2-230ENST00000557427 GRAPLQ8TC17 118 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-230ENST00000557427 PLEKHF1Q96S99 279 aa16.3■□□□□ 0.2
SHMT2-230ENST00000557427 PNNQ9H307 717 aaKnown RBP16.3■□□□□ 0.2
SHMT2-230ENST00000557427 ANKRD36CQ5JPF3 1778 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms