RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 MYD88Q99836 296 aa14.16□□□□□ -0.14
SYNE2-227ENST00000557307 ITGBL1O95965 494 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-227ENST00000557307 EPS15P42566 896 aa14.15□□□□□ -0.14
SYNE2-227ENST00000557307 MAP1SQ66K74 1059 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-227ENST00000557307 JDP2Q8WYK2 163 aa14.15□□□□□ -0.14
SYNE2-227ENST00000557307 RTFDC1Q9BY42 306 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-227ENST00000557307 MKRN1Q9UHC7 482 aaKnown RBP14.15□□□□□ -0.14
SYNE2-227ENST00000557307 SHTN1A0MZ66 631 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 ZNF316A6NFI3 1004 aaPredicted RBP14.14□□□□□ -0.15
SYNE2-227ENST00000557307 YDJCA8MPS7 323 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 DDX46Q7L014 1031 aaKnown RBP14.14□□□□□ -0.15
SYNE2-227ENST00000557307 G2E3Q7L622 706 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 RIC3Q7Z5B4 369 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 WWC1Q8IX03 1113 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 SP8Q8IXZ3 490 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 MRS2Q9HD23 443 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 SEC31BQ9NQW1 1179 aa14.14□□□□□ -0.15
SYNE2-227ENST00000557307 CACNA1FO60840 1977 aa14.13□□□□□ -0.15
SYNE2-227ENST00000557307 IRS4O14654 1257 aaPredicted RBP14.13□□□□□ -0.15
SYNE2-227ENST00000557307 EIF6P56537 245 aaKnown RBP14.13□□□□□ -0.15
SYNE2-227ENST00000557307 SF3B3Q15393 1217 aaKnown RBP14.13□□□□□ -0.15
SYNE2-227ENST00000557307 DPP8Q6V1X1 898 aaPredicted RBP14.13□□□□□ -0.15
SYNE2-227ENST00000557307 NIM1KQ8IY84 436 aa14.13□□□□□ -0.15
SYNE2-227ENST00000557307 MPNDQ8N594 471 aa14.13□□□□□ -0.15
SYNE2-227ENST00000557307 CLEC11AQ9Y240 323 aa14.13□□□□□ -0.15
SYNE2-227ENST00000557307 SALL2Q9Y467 1007 aaPredicted RBP14.13□□□□□ -0.15
SYNE2-227ENST00000557307 THSD7BQ9C0I4 1608 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 IGKV5-2P06315 115 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 GPSM2P81274 684 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 CXCL9Q07325 125 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 GOLGA2Q08379 1002 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 KIAA2012Q0VF49 1180 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 TRIM28Q13263 835 aaKnown RBP14.12□□□□□ -0.15
SYNE2-227ENST00000557307 IFFO2Q5TF58 517 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 CCDC85AQ96PX6 553 aaPredicted RBP14.12□□□□□ -0.15
SYNE2-227ENST00000557307 CREBZFQ9NS37 354 aa14.12□□□□□ -0.15
SYNE2-227ENST00000557307 POLR2AP24928 1970 aaKnown RBP14.12□□□□□ -0.15
SYNE2-227ENST00000557307 BBOX1O75936 387 aa14.11□□□□□ -0.15
SYNE2-227ENST00000557307 RAD17O75943 681 aa14.11□□□□□ -0.15
SYNE2-227ENST00000557307 CALD1Q05682 793 aaKnown RBP14.11□□□□□ -0.15
SYNE2-227ENST00000557307 CCDC27Q2M243 656 aa14.11□□□□□ -0.15
SYNE2-227ENST00000557307 COL13A1Q5TAT6 717 aaPredicted RBP14.11□□□□□ -0.15
SYNE2-227ENST00000557307 SPINK5Q9NQ38 1064 aaPredicted RBP14.11□□□□□ -0.15
SYNE2-227ENST00000557307 MAP3K2Q9Y2U5 619 aa14.11□□□□□ -0.15
SYNE2-227ENST00000557307 FANCIQ9NVI1 1328 aa14.11□□□□□ -0.15
SYNE2-227ENST00000557307 CNTNAP1P78357 1384 aa14.1□□□□□ -0.15
SYNE2-227ENST00000557307 HSPA1AP0DMV8 641 aaKnown RBP14.1□□□□□ -0.15
SYNE2-227ENST00000557307 HSPA1BP0DMV9 641 aaKnown RBP14.1□□□□□ -0.15
SYNE2-227ENST00000557307 GMPSP49915 693 aaPredicted RBP14.1□□□□□ -0.15
SYNE2-227ENST00000557307 CNTROBQ8N137 903 aa14.1□□□□□ -0.15
SYNE2-227ENST00000557307 ZBTB38Q8NAP3 1195 aaPredicted RBP14.1□□□□□ -0.15
SYNE2-227ENST00000557307 METTL22Q9BUU2 404 aaPredicted RBP14.1□□□□□ -0.15
SYNE2-227ENST00000557307 KCNQ5Q9NR82 932 aa14.1□□□□□ -0.15
SYNE2-227ENST00000557307 POLLQ9UGP5 575 aa14.1□□□□□ -0.15
SYNE2-227ENST00000557307 ZNRF3Q9ULT6 936 aa14.1□□□□□ -0.15
SYNE2-227ENST00000557307 WTIPA6NIX2 430 aaPredicted RBP14.09□□□□□ -0.15
SYNE2-227ENST00000557307 TRAF5O00463 557 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 RIMBP2O15034 1052 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 CWF19L2Q2TBE0 894 aaKnown RBP14.09□□□□□ -0.15
SYNE2-227ENST00000557307 TWISTNBQ3B726 338 aaPredicted RBP14.09□□□□□ -0.15
SYNE2-227ENST00000557307 GRIPAP1Q4V328 841 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 CCDC30Q5VVM6 783 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 TRPM4Q8TD43 1214 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 DBNDD1Q9H9R9 158 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 GPRC5DQ9NZD1 345 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 RTL9Q8NET4 1388 aa14.09□□□□□ -0.15
SYNE2-227ENST00000557307 PI4KAP2A4QPH2 592 aa14.08□□□□□ -0.16
SYNE2-227ENST00000557307 PCCAP05165 728 aaPredicted RBP14.08□□□□□ -0.16
SYNE2-227ENST00000557307 ZEB1P37275 1124 aaPredicted RBP14.08□□□□□ -0.16
SYNE2-227ENST00000557307 PNMA8AQ86V59 439 aaPredicted RBP14.08□□□□□ -0.16
SYNE2-227ENST00000557307 PI4KAP1Q8N8J0 262 aa14.08□□□□□ -0.16
SYNE2-227ENST00000557307 SUPT20HQ8NEM7 779 aa14.08□□□□□ -0.16
SYNE2-227ENST00000557307 CWC25Q9NXE8 425 aaPredicted RBP14.08□□□□□ -0.16
SYNE2-227ENST00000557307 NSFL1CQ9UNZ2 370 aaKnown RBP14.08□□□□□ -0.16
SYNE2-227ENST00000557307 ZBTB12Q9Y330 459 aaPredicted RBP14.08□□□□□ -0.16
SYNE2-227ENST00000557307 ANP32CO43423 234 aa14.07□□□□□ -0.16
SYNE2-227ENST00000557307 LMOD1P29536 600 aaPredicted RBP14.07□□□□□ -0.16
SYNE2-227ENST00000557307 VEGFBP49765 207 aa14.07□□□□□ -0.16
SYNE2-227ENST00000557307 HIRAP54198 1017 aaPredicted RBP14.07□□□□□ -0.16
SYNE2-227ENST00000557307 DOK7Q18PE1 504 aa14.07□□□□□ -0.16
SYNE2-227ENST00000557307 CIAPIN1Q6FI81 312 aa14.07□□□□□ -0.16
SYNE2-227ENST00000557307 DLK2Q6UY11 383 aa14.07□□□□□ -0.16
SYNE2-227ENST00000557307 CCDC191Q8NCU4 936 aa14.07□□□□□ -0.16
SYNE2-227ENST00000557307 TMEM88BA6NKF7 163 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 EGFRP00533 1210 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 KSR2Q6VAB6 950 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 TBC1D16Q8TBP0 767 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 TMX4Q9H1E5 349 aaPredicted RBP14.06□□□□□ -0.16
SYNE2-227ENST00000557307 VPS33BQ9H267 617 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 IL16Q14005 1332 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 CDHR2Q9BYE9 1310 aa14.06□□□□□ -0.16
SYNE2-227ENST00000557307 NEURL1BA8MQ27 555 aa14.05□□□□□ -0.16
SYNE2-227ENST00000557307 C6orf229H3BNL8 230 aa14.05□□□□□ -0.16
SYNE2-227ENST00000557307 PSMD14O00487 310 aa14.05□□□□□ -0.16
SYNE2-227ENST00000557307 ECE2O60344 883 aa14.05□□□□□ -0.16
SYNE2-227ENST00000557307 PDE8AO60658 829 aa14.05□□□□□ -0.16
SYNE2-227ENST00000557307 SLC4A2P04920 1241 aa14.05□□□□□ -0.16
SYNE2-227ENST00000557307 RPS8P62241 208 aaKnown RBP14.05□□□□□ -0.16
SYNE2-227ENST00000557307 EXOSC9Q06265 439 aaKnown RBP14.05□□□□□ -0.16
SYNE2-227ENST00000557307 WASHC4Q2M389 1173 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms