RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CCT4P50991 539 aaKnown RBP22.1■■□□□ 1.13
SHMT2-225ENST00000556798 SF3B3Q15393 1217 aaKnown RBP22.1■■□□□ 1.13
SHMT2-225ENST00000556798 HSP90B1P14625 803 aaKnown RBP22.09■■□□□ 1.13
SHMT2-225ENST00000556798 ALDH1B1P30837 517 aa22.09■■□□□ 1.13
SHMT2-225ENST00000556798 CTSWP56202 376 aa22.09■■□□□ 1.13
SHMT2-225ENST00000556798 SBF1O95248 1867 aa22.09■■□□□ 1.13
SHMT2-225ENST00000556798 C21orf2O43822 256 aa22.08■■□□□ 1.13
SHMT2-225ENST00000556798 GRIN3BO60391 1043 aa22.08■■□□□ 1.13
SHMT2-225ENST00000556798 NBPF7P0C2Y1 421 aaPredicted RBP22.08■■□□□ 1.13
SHMT2-225ENST00000556798 DDX46Q7L014 1031 aaKnown RBP22.08■■□□□ 1.13
SHMT2-225ENST00000556798 SLC51AQ86UW1 340 aa22.08■■□□□ 1.13
SHMT2-225ENST00000556798 CRAMP1Q96RY5 1269 aa22.08■■□□□ 1.13
SHMT2-225ENST00000556798 OLFM4Q6UX06 510 aa22.07■■□□□ 1.12
SHMT2-225ENST00000556798 PLA2G12BQ9BX93 195 aa22.07■■□□□ 1.12
SHMT2-225ENST00000556798 LRRC37AA6NMS7 1700 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 PPEF1O14829 653 aaPredicted RBP22.06■■□□□ 1.12
SHMT2-225ENST00000556798 CCDC152Q4G0S7 254 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 INTS3Q68E01 1043 aaKnown RBP22.06■■□□□ 1.12
SHMT2-225ENST00000556798 ARHGAP27Q6ZUM4 889 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 SUCLG2Q96I99 432 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 USP44Q9H0E7 712 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 SEC31BQ9NQW1 1179 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 UTYO14607 1347 aa22.06■■□□□ 1.12
SHMT2-225ENST00000556798 GRAPQ13588 217 aa22.05■■□□□ 1.12
SHMT2-225ENST00000556798 EPHA10Q5JZY3 1008 aa22.05■■□□□ 1.12
SHMT2-225ENST00000556798 FTSJ3Q8IY81 847 aaKnown RBP22.05■■□□□ 1.12
SHMT2-225ENST00000556798 TMEM57Q8N5G2 664 aa22.05■■□□□ 1.12
SHMT2-225ENST00000556798 TTLL11Q8NHH1 800 aa22.05■■□□□ 1.12
SHMT2-225ENST00000556798 GRAPLQ8TC17 118 aaPredicted RBP22.05■■□□□ 1.12
SHMT2-225ENST00000556798 CELF1Q92879 486 aaKnown RBP22.05■■□□□ 1.12
SHMT2-225ENST00000556798 GREM2Q9H772 168 aa22.05■■□□□ 1.12
SHMT2-225ENST00000556798 PLIN1O60240 522 aa22.04■■□□□ 1.12
SHMT2-225ENST00000556798 RLBP1P12271 317 aa22.04■■□□□ 1.12
SHMT2-225ENST00000556798 FOXO4P98177 505 aa22.04■■□□□ 1.12
SHMT2-225ENST00000556798 C7orf43Q8WVR3 580 aa22.04■■□□□ 1.12
SHMT2-225ENST00000556798 FAM161AQ3B820 660 aa22.03■■□□□ 1.12
SHMT2-225ENST00000556798 DZIP1LQ8IYY4 767 aaKnown RBP22.03■■□□□ 1.12
SHMT2-225ENST00000556798 KAZALD1Q96I82 304 aa22.03■■□□□ 1.12
SHMT2-225ENST00000556798 RASSF7Q02833 373 aa22.02■■□□□ 1.12
SHMT2-225ENST00000556798 MEIS3Q99687 375 aa22.02■■□□□ 1.12
SHMT2-225ENST00000556798 CHMP3Q9Y3E7 222 aa22.02■■□□□ 1.12
SHMT2-225ENST00000556798 RTL9Q8NET4 1388 aa22.01■■□□□ 1.11
SHMT2-225ENST00000556798 CCDC93Q567U6 631 aa22.01■■□□□ 1.11
SHMT2-225ENST00000556798 PANK1Q8TE04 598 aa22.01■■□□□ 1.11
SHMT2-225ENST00000556798 DICER1Q9UPY3 1922 aaKnown RBP22■■□□□ 1.11
SHMT2-225ENST00000556798 A0A1B0GUL6 1792 aa22■■□□□ 1.11
SHMT2-225ENST00000556798 SNED1Q8TER0 1413 aa22■■□□□ 1.11
SHMT2-225ENST00000556798 CSF1RP07333 972 aa22■■□□□ 1.11
SHMT2-225ENST00000556798 LMBR1LQ6UX01 489 aa22■■□□□ 1.11
SHMT2-225ENST00000556798 BICC1Q9H694 974 aaKnown RBP22■■□□□ 1.11
SHMT2-225ENST00000556798 TIAM2Q8IVF5 1701 aa22■■□□□ 1.11
SHMT2-225ENST00000556798 NFKBIEO00221 500 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 BBOX1O75936 387 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 UBTFL1P0CB47 393 aaPredicted RBP21.99■■□□□ 1.11
SHMT2-225ENST00000556798 ITGA6P23229 1130 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 SOGA3Q5TF21 947 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 ITPRIPQ8IWB1 547 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 ATP6V0A2Q9Y487 856 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 LTBP1Q14766 1721 aa21.99■■□□□ 1.11
SHMT2-225ENST00000556798 RPS8P62241 208 aaKnown RBP21.98■■□□□ 1.11
SHMT2-225ENST00000556798 ANKRD44Q8N8A2 993 aa21.98■■□□□ 1.11
SHMT2-225ENST00000556798 ANKRD18AQ8IVF6 992 aa21.97■■□□□ 1.11
SHMT2-225ENST00000556798 CDC5LQ99459 802 aaKnown RBP21.97■■□□□ 1.11
SHMT2-225ENST00000556798 TAOK3Q9H2K8 898 aa21.97■■□□□ 1.11
SHMT2-225ENST00000556798 LRRFIP2Q9Y608 721 aaKnown RBP21.97■■□□□ 1.11
SHMT2-225ENST00000556798 PRELPP51888 382 aa21.96■■□□□ 1.11
SHMT2-225ENST00000556798 SP8Q8IXZ3 490 aa21.96■■□□□ 1.11
SHMT2-225ENST00000556798 DUOX1Q9NRD9 1551 aa21.95■■□□□ 1.11
SHMT2-225ENST00000556798 ANKRD18BA2A2Z9 1011 aa21.95■■□□□ 1.1
SHMT2-225ENST00000556798 RABL6Q3YEC7 729 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-225ENST00000556798 C20orf194Q5TEA3 1177 aa21.95■■□□□ 1.1
SHMT2-225ENST00000556798 CC2D2BQ6DHV5 1058 aa21.95■■□□□ 1.1
SHMT2-225ENST00000556798 TMC4Q7Z404 712 aa21.95■■□□□ 1.1
SHMT2-225ENST00000556798 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-225ENST00000556798 TMX4Q9H1E5 349 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-225ENST00000556798 GNAI3P08754 354 aa21.94■■□□□ 1.1
SHMT2-225ENST00000556798 MS4A1P11836 297 aa21.94■■□□□ 1.1
SHMT2-225ENST00000556798 IFIT5Q13325 482 aaKnown RBP21.94■■□□□ 1.1
SHMT2-225ENST00000556798 RTKN2Q8IZC4 609 aa21.94■■□□□ 1.1
SHMT2-225ENST00000556798 IGHMBP2P38935 993 aaKnown RBP21.93■■□□□ 1.1
SHMT2-225ENST00000556798 FKBP4Q02790 459 aaKnown RBP eCLIP21.93■■□□□ 1.1
SHMT2-225ENST00000556798 CCDC57Q2TAC2 916 aa21.93■■□□□ 1.1
SHMT2-225ENST00000556798 ZNF594Q96JF6 807 aaPredicted RBP21.93■■□□□ 1.1
SHMT2-225ENST00000556798 LTBP3Q9NS15 1303 aa21.93■■□□□ 1.1
SHMT2-225ENST00000556798 COG6Q9Y2V7 657 aa21.93■■□□□ 1.1
SHMT2-225ENST00000556798 ZNF277Q9NRM2 450 aaPredicted RBP21.92■■□□□ 1.1
SHMT2-225ENST00000556798 RNF181Q9P0P0 153 aa21.92■■□□□ 1.1
SHMT2-225ENST00000556798 RRP1P56182 461 aaKnown RBP21.91■■□□□ 1.1
SHMT2-225ENST00000556798 GPSM2P81274 684 aa21.91■■□□□ 1.1
SHMT2-225ENST00000556798 MVPQ14764 893 aaKnown RBP21.91■■□□□ 1.1
SHMT2-225ENST00000556798 TAF7LQ5H9L4 462 aa21.91■■□□□ 1.1
SHMT2-225ENST00000556798 C9orf131Q5VYM1 1079 aa21.91■■□□□ 1.1
SHMT2-225ENST00000556798 DPP8Q6V1X1 898 aaPredicted RBP21.91■■□□□ 1.1
SHMT2-225ENST00000556798 MPNDQ8N594 471 aa21.91■■□□□ 1.1
SHMT2-225ENST00000556798 C1orf115Q9H7X2 142 aa21.91■■□□□ 1.1
SHMT2-225ENST00000556798 LMNB1P20700 586 aa21.9■■□□□ 1.1
SHMT2-225ENST00000556798 PSMD1Q99460 953 aa21.9■■□□□ 1.1
SHMT2-225ENST00000556798 MPHOSPH8Q99549 860 aa21.9■■□□□ 1.1
SHMT2-225ENST00000556798 BSDC1Q9NW68 430 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-225ENST00000556798 NSFL1CQ9UNZ2 370 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms