RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 KANK4Q5T7N3 995 aaPredicted RBP8.51□□□□□ -1.05
PRPF39-210ENST00000556718 LARP1Q6PKG0 1096 aaKnown RBP8.51□□□□□ -1.05
PRPF39-210ENST00000556718 DHX32Q7L7V1 743 aaKnown RBP8.51□□□□□ -1.05
PRPF39-210ENST00000556718 FBXO11Q86XK2 927 aa8.51□□□□□ -1.05
PRPF39-210ENST00000556718 KRTAP1-3Q8IUG1 177 aa8.51□□□□□ -1.05
PRPF39-210ENST00000556718 WFDC12Q8WWY7 111 aa8.51□□□□□ -1.05
PRPF39-210ENST00000556718 SASH3O75995 380 aa8.5□□□□□ -1.05
PRPF39-210ENST00000556718 DGKZQ13574 1117 aa8.5□□□□□ -1.05
PRPF39-210ENST00000556718 FNBP4Q8N3X1 1017 aaPredicted RBP8.5□□□□□ -1.05
PRPF39-210ENST00000556718 TRPM4Q8TD43 1214 aa8.5□□□□□ -1.05
PRPF39-210ENST00000556718 QTRT2Q9H974 415 aaKnown RBP8.5□□□□□ -1.05
PRPF39-210ENST00000556718 ELMSAN1Q6PJG2 1045 aa8.49□□□□□ -1.05
PRPF39-210ENST00000556718 HFE2Q6ZVN8 426 aa8.49□□□□□ -1.05
PRPF39-210ENST00000556718 MEGF10Q96KG7 1140 aa8.49□□□□□ -1.05
PRPF39-210ENST00000556718 KRTAP4-12Q9BQ66 201 aa8.49□□□□□ -1.05
PRPF39-210ENST00000556718 FRRS1LQ9P0K9 344 aa8.49□□□□□ -1.05
PRPF39-210ENST00000556718 USP20Q9Y2K6 914 aa8.49□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L15C9J2P7 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L10C9JJH3 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L13C9JLJ4 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L12C9JPN9 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L11C9JVI0 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L21D6R901 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L18D6R9N7 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L22D6RA61 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L17D6RBQ6 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L19D6RCP7 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L20D6RJB6 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 DEAF1O75398 565 aaPredicted RBP8.48□□□□□ -1.05
PRPF39-210ENST00000556718 EPB42P16452 691 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 USP17L24Q0WX57 530 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 WFDC8Q8IUA0 241 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 DTWD1Q8N5C7 304 aa8.48□□□□□ -1.05
PRPF39-210ENST00000556718 MICAL2O94851 1124 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 RARAP10276 462 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 ARSDP51689 593 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 GPLD1P80108 840 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 PCSK7Q16549 785 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 ANKMY2Q8IV38 441 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 PPP1R12CQ9BZL4 782 aa8.47□□□□□ -1.05
PRPF39-210ENST00000556718 SMG9Q9H0W8 520 aaKnown RBP8.47□□□□□ -1.05
PRPF39-210ENST00000556718 PROSER2Q86WR7 435 aaPredicted RBP8.46□□□□□ -1.06
PRPF39-210ENST00000556718 WEE1P30291 646 aa8.45□□□□□ -1.06
PRPF39-210ENST00000556718 TTC9Q92623 222 aa8.45□□□□□ -1.06
PRPF39-210ENST00000556718 ARXQ96QS3 562 aa8.45□□□□□ -1.06
PRPF39-210ENST00000556718 FAM196BA6NMK8 535 aa8.44□□□□□ -1.06
PRPF39-210ENST00000556718 DLL1O00548 723 aa8.44□□□□□ -1.06
PRPF39-210ENST00000556718 OPLAHO14841 1288 aa8.44□□□□□ -1.06
PRPF39-210ENST00000556718 ALX3O95076 343 aa8.44□□□□□ -1.06
PRPF39-210ENST00000556718 IGF2-ASQ6U949 168 aa8.44□□□□□ -1.06
PRPF39-210ENST00000556718 LRFN2Q9ULH4 789 aa8.44□□□□□ -1.06
PRPF39-210ENST00000556718 EIF2AK2P19525 551 aaKnown RBP8.43□□□□□ -1.06
PRPF39-210ENST00000556718 NRLP54845 237 aa8.43□□□□□ -1.06
PRPF39-210ENST00000556718 C11orf91Q3C1V1 193 aa8.43□□□□□ -1.06
PRPF39-210ENST00000556718 LCE3BQ5TA77 95 aa8.43□□□□□ -1.06
PRPF39-210ENST00000556718 RNF112Q9ULX5 631 aa8.43□□□□□ -1.06
PRPF39-210ENST00000556718 RTCBQ9Y3I0 505 aaKnown RBP8.43□□□□□ -1.06
PRPF39-210ENST00000556718 J3QW42 95 aa8.42□□□□□ -1.06
PRPF39-210ENST00000556718 LMOD1P29536 600 aaPredicted RBP8.42□□□□□ -1.06
PRPF39-210ENST00000556718 MYO19Q96H55 970 aa8.42□□□□□ -1.06
PRPF39-210ENST00000556718 CALR3Q96L12 384 aaKnown RBP8.42□□□□□ -1.06
PRPF39-210ENST00000556718 TLR7Q9NYK1 1049 aaKnown RBP8.42□□□□□ -1.06
PRPF39-210ENST00000556718 FOXO3O43524 673 aa8.41□□□□□ -1.06
PRPF39-210ENST00000556718 PRR23CQ6ZRP0 262 aa8.41□□□□□ -1.06
PRPF39-210ENST00000556718 PLD4Q96BZ4 506 aa8.41□□□□□ -1.06
PRPF39-210ENST00000556718 VRTNQ9H8Y1 702 aa8.41□□□□□ -1.06
PRPF39-210ENST00000556718 C11orf16Q9NQ32 467 aa8.41□□□□□ -1.06
PRPF39-210ENST00000556718 RGL4Q8IZJ4 473 aa8.4□□□□□ -1.06
PRPF39-210ENST00000556718 CMTR1Q8N1G2 835 aaKnown RBP8.4□□□□□ -1.06
PRPF39-210ENST00000556718 LOC102724428A0A0B4J2F2 783 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 MMP20O60882 483 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 XYLBO75191 536 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 EGFRP00533 1210 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 SIK1P57059 783 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 GDF6Q6KF10 455 aaPredicted RBP8.39□□□□□ -1.07
PRPF39-210ENST00000556718 TREML1Q86YW5 311 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 DZIP1LQ8IYY4 767 aaKnown RBP8.39□□□□□ -1.07
PRPF39-210ENST00000556718 VTI1AQ96AJ9 217 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 NSUN5Q96P11 429 aaKnown RBP8.39□□□□□ -1.07
PRPF39-210ENST00000556718 AKTIPQ9H8T0 292 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 KCNMB2Q9Y691 235 aa8.39□□□□□ -1.07
PRPF39-210ENST00000556718 IL22RA1Q8N6P7 574 aa8.38□□□□□ -1.07
PRPF39-210ENST00000556718 F8W735 103 aaPredicted RBP8.37□□□□□ -1.07
PRPF39-210ENST00000556718 FSTP19883 344 aa8.37□□□□□ -1.07
PRPF39-210ENST00000556718 COX20Q5RI15 118 aa8.37□□□□□ -1.07
PRPF39-210ENST00000556718 PSAPP07602 524 aa8.36□□□□□ -1.07
PRPF39-210ENST00000556718 ARID4AP29374 1257 aaPredicted RBP8.36□□□□□ -1.07
PRPF39-210ENST00000556718 SETDB1Q15047 1291 aa8.36□□□□□ -1.07
PRPF39-210ENST00000556718 CDCA8Q53HL2 280 aa8.36□□□□□ -1.07
PRPF39-210ENST00000556718 KRTAP19-1Q8IUB9 90 aa8.36□□□□□ -1.07
PRPF39-210ENST00000556718 AGGF1Q8N302 714 aaeCLIP8.36□□□□□ -1.07
PRPF39-210ENST00000556718 MRPL18Q9H0U6 180 aaKnown RBP8.36□□□□□ -1.07
PRPF39-210ENST00000556718 TRIM33Q9UPN9 1127 aa8.36□□□□□ -1.07
PRPF39-210ENST00000556718 SSTR4P31391 388 aa8.35□□□□□ -1.07
PRPF39-210ENST00000556718 FKBP5Q13451 457 aaPredicted RBP8.35□□□□□ -1.07
PRPF39-210ENST00000556718 TMEM130Q8N3G9 435 aa8.35□□□□□ -1.07
PRPF39-210ENST00000556718 GHRHP01286 108 aa8.34□□□□□ -1.07
PRPF39-210ENST00000556718 TRIP4Q15650 581 aaPredicted RBP8.34□□□□□ -1.07
PRPF39-210ENST00000556718 FAM26DQ5JW98 314 aa8.34□□□□□ -1.07
PRPF39-210ENST00000556718 CFAP70Q5T0N1 1121 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms