RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CDHR2Q9BYE9 1310 aa17.5■□□□□ 0.39
SHMT2-219ENST00000555563 ZNF277Q9NRM2 450 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-219ENST00000555563 ATP6V0A2Q9Y487 856 aa17.5■□□□□ 0.39
SHMT2-219ENST00000555563 HSP90B1P14625 803 aaKnown RBP17.49■□□□□ 0.39
SHMT2-219ENST00000555563 LINS1Q8NG48 757 aa17.49■□□□□ 0.39
SHMT2-219ENST00000555563 PSMD1Q99460 953 aa17.49■□□□□ 0.39
SHMT2-219ENST00000555563 NMRK2Q9NPI5 230 aa17.49■□□□□ 0.39
SHMT2-219ENST00000555563 MYH3P11055 1940 aa17.49■□□□□ 0.39
SHMT2-219ENST00000555563 PDE8AO60658 829 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 BBOX1O75936 387 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 HNRNPUQ00839 825 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHMT2-219ENST00000555563 GCKRQ14397 625 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 UBE3BQ7Z3V4 1068 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 MRPL50Q8N5N7 158 aaKnown RBP17.48■□□□□ 0.39
SHMT2-219ENST00000555563 SSH1Q8WYL5 1049 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 CELF1Q92879 486 aaKnown RBP17.48■□□□□ 0.39
SHMT2-219ENST00000555563 BCL2L13Q9BXK5 485 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 COL4A5P29400 1685 aa17.48■□□□□ 0.39
SHMT2-219ENST00000555563 KDM2BQ8NHM5 1336 aa17.47■□□□□ 0.39
SHMT2-219ENST00000555563 BEND3Q5T5X7 828 aa17.47■□□□□ 0.39
SHMT2-219ENST00000555563 DUOX1Q9NRD9 1551 aa17.47■□□□□ 0.39
SHMT2-219ENST00000555563 IARSP41252 1262 aaKnown RBP17.46■□□□□ 0.39
SHMT2-219ENST00000555563 CTSWP56202 376 aa17.46■□□□□ 0.39
SHMT2-219ENST00000555563 GRIPAP1Q4V328 841 aa17.46■□□□□ 0.39
SHMT2-219ENST00000555563 SP8Q8IXZ3 490 aa17.46■□□□□ 0.39
SHMT2-219ENST00000555563 CCDC85AQ96PX6 553 aaPredicted RBP17.46■□□□□ 0.39
SHMT2-219ENST00000555563 LTBP1Q14766 1721 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 GLTPD2A6NH11 291 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 H7C1W4 665 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 APLP1P51693 650 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 CASP7P55210 303 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 CCDC152Q4G0S7 254 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 TMC4Q7Z404 712 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 TMX4Q9H1E5 349 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-219ENST00000555563 SEC31BQ9NQW1 1179 aa17.45■□□□□ 0.38
SHMT2-219ENST00000555563 WDR90Q96KV7 1748 aa17.44■□□□□ 0.38
SHMT2-219ENST00000555563 TOMM70O94826 608 aa17.44■□□□□ 0.38
SHMT2-219ENST00000555563 CT47B1P0C2W7 299 aaPredicted RBP17.44■□□□□ 0.38
SHMT2-219ENST00000555563 ALDH1L2Q3SY69 923 aa17.44■□□□□ 0.38
SHMT2-219ENST00000555563 SMC4Q9NTJ3 1288 aa17.44■□□□□ 0.38
SHMT2-219ENST00000555563 SPEF2Q9C093 1822 aa17.44■□□□□ 0.38
SHMT2-219ENST00000555563 PTPRCP08575 1304 aa17.44■□□□□ 0.38
SHMT2-219ENST00000555563 SLC4A10Q6U841 1118 aa17.43■□□□□ 0.38
SHMT2-219ENST00000555563 DPP8Q6V1X1 898 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-219ENST00000555563 ZNF541Q9H0D2 1346 aa17.43■□□□□ 0.38
SHMT2-219ENST00000555563 RTL9Q8NET4 1388 aa17.42■□□□□ 0.38
SHMT2-219ENST00000555563 RPS8P62241 208 aaKnown RBP17.42■□□□□ 0.38
SHMT2-219ENST00000555563 MPNDQ8N594 471 aa17.42■□□□□ 0.38
SHMT2-219ENST00000555563 TTLL11Q8NHH1 800 aa17.42■□□□□ 0.38
SHMT2-219ENST00000555563 PLA2G12BQ9BX93 195 aa17.42■□□□□ 0.38
SHMT2-219ENST00000555563 RTFDC1Q9BY42 306 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-219ENST00000555563 AOC3Q16853 763 aa17.41■□□□□ 0.38
SHMT2-219ENST00000555563 DPY19L2Q6NUT2 758 aa17.41■□□□□ 0.38
SHMT2-219ENST00000555563 LARGE2Q8N3Y3 721 aa17.41■□□□□ 0.38
SHMT2-219ENST00000555563 SRCIN1Q9C0H9 1055 aa17.41■□□□□ 0.38
SHMT2-219ENST00000555563 GREM2Q9H772 168 aa17.41■□□□□ 0.38
SHMT2-219ENST00000555563 RRAGCQ9HB90 399 aa17.41■□□□□ 0.38
SHMT2-219ENST00000555563 GRM8O00222 908 aa17.4■□□□□ 0.38
SHMT2-219ENST00000555563 PPIP5K2O43314 1243 aa17.4■□□□□ 0.38
SHMT2-219ENST00000555563 ALDH1L1O75891 902 aa17.4■□□□□ 0.38
SHMT2-219ENST00000555563 SUPT20HQ8NEM7 779 aa17.4■□□□□ 0.38
SHMT2-219ENST00000555563 JDP2Q8WYK2 163 aa17.4■□□□□ 0.38
SHMT2-219ENST00000555563 FZD9O00144 591 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 DDNO94850 711 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-219ENST00000555563 GPSM2P81274 684 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 FAM161AQ3B820 660 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 ANKRD18AQ8IVF6 992 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 NIM1KQ8IY84 436 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 DNAJC5GQ8N7S2 189 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 CDC5LQ99459 802 aaKnown RBP17.39■□□□□ 0.37
SHMT2-219ENST00000555563 ZBED9Q6R2W3 1325 aa17.39■□□□□ 0.37
SHMT2-219ENST00000555563 RARSP54136 660 aaKnown RBP17.38■□□□□ 0.37
SHMT2-219ENST00000555563 NSFL1CQ9UNZ2 370 aaKnown RBP17.38■□□□□ 0.37
SHMT2-219ENST00000555563 POTECB2RU33 542 aa17.37■□□□□ 0.37
SHMT2-219ENST00000555563 KIAA2012Q0VF49 1180 aa17.37■□□□□ 0.37
SHMT2-219ENST00000555563 C16orf71Q8IYS4 520 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-219ENST00000555563 VPS33BQ9H267 617 aa17.37■□□□□ 0.37
SHMT2-219ENST00000555563 C9orf78Q9NZ63 289 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-219ENST00000555563 CSF1RP07333 972 aa17.36■□□□□ 0.37
SHMT2-219ENST00000555563 VEGFAP15692 232 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-219ENST00000555563 ITGA6P23229 1130 aa17.36■□□□□ 0.37
SHMT2-219ENST00000555563 BRPF1P55201 1214 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-219ENST00000555563 FOXO4P98177 505 aa17.36■□□□□ 0.37
SHMT2-219ENST00000555563 EPHA10Q5JZY3 1008 aa17.36■□□□□ 0.37
SHMT2-219ENST00000555563 RBM46Q8TBY0 533 aaKnown RBP17.36■□□□□ 0.37
SHMT2-219ENST00000555563 L3MBTL3Q96JM7 780 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-219ENST00000555563 POLLQ9UGP5 575 aa17.36■□□□□ 0.37
SHMT2-219ENST00000555563 EIF6P56537 245 aaKnown RBP17.35■□□□□ 0.37
SHMT2-219ENST00000555563 PODXL2Q9NZ53 605 aa17.35■□□□□ 0.37
SHMT2-219ENST00000555563 NOB1Q9ULX3 412 aaKnown RBP17.35■□□□□ 0.37
SHMT2-219ENST00000555563 KIF16BQ96L93 1317 aa17.35■□□□□ 0.37
SHMT2-219ENST00000555563 SCN4AP35499 1836 aa17.35■□□□□ 0.37
SHMT2-219ENST00000555563 C6orf229H3BNL8 230 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 UTYO14607 1347 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 UFL1O94874 794 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 NBPF7P0C2Y1 421 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-219ENST00000555563 TBC1D16Q8TBP0 767 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 SUCLG2Q96I99 432 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 GPR101Q96P66 508 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-219ENST00000555563 BSDC1Q9NW68 430 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms