RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CRTC2Q53ET0 693 aaPredicted RBP8.55□□□□□ -1.04
SCFD1-216ENST00000555550 LCE3BQ5TA77 95 aa8.55□□□□□ -1.04
SCFD1-216ENST00000555550 LARP1Q6PKG0 1096 aaKnown RBP8.55□□□□□ -1.04
SCFD1-216ENST00000555550 IGF2-ASQ6U949 168 aa8.55□□□□□ -1.04
SCFD1-216ENST00000555550 DTWD1Q8N5C7 304 aa8.55□□□□□ -1.04
SCFD1-216ENST00000555550 TRPM4Q8TD43 1214 aa8.55□□□□□ -1.04
SCFD1-216ENST00000555550 USP20Q9Y2K6 914 aa8.55□□□□□ -1.04
SCFD1-216ENST00000555550 MAFBQ9Y5Q3 323 aaPredicted RBP8.55□□□□□ -1.04
SCFD1-216ENST00000555550 DEAF1O75398 565 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-216ENST00000555550 FLIIQ13045 1269 aa8.54□□□□□ -1.04
SCFD1-216ENST00000555550 DGKZQ13574 1117 aa8.54□□□□□ -1.04
SCFD1-216ENST00000555550 SMG9Q9H0W8 520 aaKnown RBP8.54□□□□□ -1.04
SCFD1-216ENST00000555550 FRRS1LQ9P0K9 344 aa8.54□□□□□ -1.04
SCFD1-216ENST00000555550 RARAP10276 462 aa8.53□□□□□ -1.04
SCFD1-216ENST00000555550 GLMNQ92990 594 aa8.53□□□□□ -1.04
SCFD1-216ENST00000555550 MICAL2O94851 1124 aa8.52□□□□□ -1.05
SCFD1-216ENST00000555550 ALX3O95076 343 aa8.52□□□□□ -1.05
SCFD1-216ENST00000555550 IGFBP4P22692 258 aa8.52□□□□□ -1.05
SCFD1-216ENST00000555550 PTK7Q13308 1070 aa8.52□□□□□ -1.05
SCFD1-216ENST00000555550 CLUAP1Q96AJ1 413 aa8.52□□□□□ -1.05
SCFD1-216ENST00000555550 RNF112Q9ULX5 631 aa8.52□□□□□ -1.05
SCFD1-216ENST00000555550 J3QW42 95 aa8.51□□□□□ -1.05
SCFD1-216ENST00000555550 ARSDP51689 593 aa8.51□□□□□ -1.05
SCFD1-216ENST00000555550 KANK4Q5T7N3 995 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-216ENST00000555550 PRR23CQ6ZRP0 262 aa8.51□□□□□ -1.05
SCFD1-216ENST00000555550 TTC9Q92623 222 aa8.51□□□□□ -1.05
SCFD1-216ENST00000555550 OPLAHO14841 1288 aa8.5□□□□□ -1.05
SCFD1-216ENST00000555550 GPLD1P80108 840 aa8.5□□□□□ -1.05
SCFD1-216ENST00000555550 QTRT2Q9H974 415 aaKnown RBP8.5□□□□□ -1.05
SCFD1-216ENST00000555550 DLL1O00548 723 aa8.49□□□□□ -1.05
SCFD1-216ENST00000555550 EIF2AK2P19525 551 aaKnown RBP8.49□□□□□ -1.05
SCFD1-216ENST00000555550 ANKMY2Q8IV38 441 aa8.49□□□□□ -1.05
SCFD1-216ENST00000555550 C11orf91Q3C1V1 193 aa8.48□□□□□ -1.05
SCFD1-216ENST00000555550 GDF6Q6KF10 455 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-216ENST00000555550 CMTR1Q8N1G2 835 aaKnown RBP8.48□□□□□ -1.05
SCFD1-216ENST00000555550 AKTIPQ9H8T0 292 aa8.48□□□□□ -1.05
SCFD1-216ENST00000555550 RTCBQ9Y3I0 505 aaKnown RBP8.48□□□□□ -1.05
SCFD1-216ENST00000555550 DZIP1LQ8IYY4 767 aaKnown RBP8.47□□□□□ -1.05
SCFD1-216ENST00000555550 FNBP4Q8N3X1 1017 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-216ENST00000555550 PLD4Q96BZ4 506 aa8.47□□□□□ -1.05
SCFD1-216ENST00000555550 PPP1R12CQ9BZL4 782 aa8.47□□□□□ -1.05
SCFD1-216ENST00000555550 TLR7Q9NYK1 1049 aaKnown RBP8.47□□□□□ -1.05
SCFD1-216ENST00000555550 LOC102724428A0A0B4J2F2 783 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L15C9J2P7 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L10C9JJH3 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L13C9JLJ4 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L12C9JPN9 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L11C9JVI0 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L21D6R901 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L18D6R9N7 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L22D6RA61 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L17D6RBQ6 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L19D6RCP7 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L20D6RJB6 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 SSTR4P31391 388 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 NRLP54845 237 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 SIK1P57059 783 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 USP17L24Q0WX57 530 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 RGL4Q8IZJ4 473 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 VTI1AQ96AJ9 217 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 VRTNQ9H8Y1 702 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 C11orf16Q9NQ32 467 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 PCMTD2Q9NV79 361 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 LRFN2Q9ULH4 789 aa8.46□□□□□ -1.06
SCFD1-216ENST00000555550 XYLBO75191 536 aa8.45□□□□□ -1.06
SCFD1-216ENST00000555550 FSTP19883 344 aa8.45□□□□□ -1.06
SCFD1-216ENST00000555550 LMOD1P29536 600 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-216ENST00000555550 WEE1P30291 646 aa8.45□□□□□ -1.06
SCFD1-216ENST00000555550 IL22RA1Q8N6P7 574 aa8.45□□□□□ -1.06
SCFD1-216ENST00000555550 MMP20O60882 483 aa8.44□□□□□ -1.06
SCFD1-216ENST00000555550 ARID4AP29374 1257 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-216ENST00000555550 KRTAP19-1Q8IUB9 90 aa8.44□□□□□ -1.06
SCFD1-216ENST00000555550 TMEM130Q8N3G9 435 aa8.44□□□□□ -1.06
SCFD1-216ENST00000555550 CALR3Q96L12 384 aaKnown RBP8.44□□□□□ -1.06
SCFD1-216ENST00000555550 NSUN5Q96P11 429 aaKnown RBP8.44□□□□□ -1.06
SCFD1-216ENST00000555550 ARXQ96QS3 562 aa8.44□□□□□ -1.06
SCFD1-216ENST00000555550 FAM196BA6NMK8 535 aa8.43□□□□□ -1.06
SCFD1-216ENST00000555550 F8W735 103 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-216ENST00000555550 SETDB1Q15047 1291 aa8.43□□□□□ -1.06
SCFD1-216ENST00000555550 PROSER2Q86WR7 435 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-216ENST00000555550 TREML1Q86YW5 311 aa8.43□□□□□ -1.06
SCFD1-216ENST00000555550 AGGF1Q8N302 714 aaeCLIP8.43□□□□□ -1.06
SCFD1-216ENST00000555550 MYO19Q96H55 970 aa8.43□□□□□ -1.06
SCFD1-216ENST00000555550 MRPL18Q9H0U6 180 aaKnown RBP8.43□□□□□ -1.06
SCFD1-216ENST00000555550 FOXO3O43524 673 aa8.42□□□□□ -1.06
SCFD1-216ENST00000555550 EGFRP00533 1210 aa8.42□□□□□ -1.06
SCFD1-216ENST00000555550 PSAPP07602 524 aa8.42□□□□□ -1.06
SCFD1-216ENST00000555550 KCNMB2Q9Y691 235 aa8.42□□□□□ -1.06
SCFD1-216ENST00000555550 GHRHP01286 108 aa8.41□□□□□ -1.06
SCFD1-216ENST00000555550 MCTP1Q6DN14 999 aa8.41□□□□□ -1.06
SCFD1-216ENST00000555550 GOLGA2P5Q9HBQ8 144 aa8.41□□□□□ -1.06
SCFD1-216ENST00000555550 TRIM33Q9UPN9 1127 aa8.41□□□□□ -1.06
SCFD1-216ENST00000555550 GLB1P16278 677 aa8.4□□□□□ -1.06
SCFD1-216ENST00000555550 CDCA8Q53HL2 280 aa8.4□□□□□ -1.06
SCFD1-216ENST00000555550 KRTAP9-9Q9BYP9 154 aa8.4□□□□□ -1.06
SCFD1-216ENST00000555550 KRTAP9-4Q9BYQ2 154 aa8.4□□□□□ -1.06
SCFD1-216ENST00000555550 MED26O95402 600 aa8.39□□□□□ -1.07
SCFD1-216ENST00000555550 COX20Q5RI15 118 aa8.39□□□□□ -1.07
SCFD1-216ENST00000555550 SLC51AQ86UW1 340 aa8.38□□□□□ -1.07
SCFD1-216ENST00000555550 FAM200AQ8TCP9 573 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms