RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 USP3Q9Y6I4 520 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 RAB3GAP2Q9H2M9 1393 aa8.2□□□□□ -1.1
VPS33B-203ENST00000554264 CHD2O14647 1828 aaKnown RBP8.19□□□□□ -1.1
VPS33B-203ENST00000554264 DIP2AQ14689 1571 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 SENP3-EIF4A1A0A087X0R7 540 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 RHOQP17081 205 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 PTSQ03393 145 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 PSME1Q06323 249 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.19□□□□□ -1.1
VPS33B-203ENST00000554264 LYSMD3Q7Z3D4 306 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 SIX5Q8N196 739 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 LARGE2Q8N3Y3 721 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 CCDC97Q96F63 343 aaPredicted RBP8.19□□□□□ -1.1
VPS33B-203ENST00000554264 AFF2P51816 1311 aa8.19□□□□□ -1.1
VPS33B-203ENST00000554264 SFI1A8K8P3 1242 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 ATP1A2P50993 1020 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 SMTNP53814 917 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 SLC27A3Q5K4L6 730 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 BRINP3Q76B58 766 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 ARXQ96QS3 562 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 DCCP43146 1447 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 ADAMTS13Q76LX8 1427 aa8.18□□□□□ -1.1
VPS33B-203ENST00000554264 SLC35F4A4IF30 521 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 VEGFBP49765 207 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 EPHA4P54764 986 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 RBM6P78332 1123 aaKnown RBP8.17□□□□□ -1.1
VPS33B-203ENST00000554264 TLR1Q15399 786 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 ZNF295-AS1Q8N0V1 137 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 LRRC59Q96AG4 307 aaKnown RBP8.17□□□□□ -1.1
VPS33B-203ENST00000554264 IQSEC3Q9UPP2 1182 aaPredicted RBP8.17□□□□□ -1.1
VPS33B-203ENST00000554264 ANKRD50Q9ULJ7 1429 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 ADGRL2O95490 1459 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 TMEM131LA2VDJ0 1609 aa8.17□□□□□ -1.1
VPS33B-203ENST00000554264 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.17□□□□□ -1.1
VPS33B-203ENST00000554264 FAM196BA6NMK8 535 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 SPATA31C2B4DYI2 1134 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L15C9J2P7 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L10C9JJH3 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L13C9JLJ4 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L12C9JPN9 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L11C9JVI0 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L21D6R901 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L18D6R9N7 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L22D6RA61 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L17D6RBQ6 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L19D6RCP7 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L20D6RJB6 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 TRPM2O94759 1503 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 USP17L24Q0WX57 530 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 DPYDQ12882 1025 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 MTFR1Q15390 333 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 LCE2CQ5TA81 110 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 LARP1Q6PKG0 1096 aaKnown RBP8.16□□□□□ -1.1
VPS33B-203ENST00000554264 GCC2Q8IWJ2 1684 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 TNS4Q8IZW8 715 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 ZSCAN10Q96SZ4 725 aaPredicted RBP8.16□□□□□ -1.1
VPS33B-203ENST00000554264 AMOTL2Q9Y2J4 779 aa8.16□□□□□ -1.1
VPS33B-203ENST00000554264 ASXL1Q8IXJ9 1541 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 RGS12O14924 1447 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 A6NJY4 79 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 LGR5O75473 907 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 NEFLP07196 543 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 NBPF10Q6P3W6 841 aaKnown RBP8.15□□□□□ -1.1
VPS33B-203ENST00000554264 ANKMY2Q8IV38 441 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 NBPF15Q8N660 670 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 TSEN2Q8NCE0 465 aaKnown RBP8.15□□□□□ -1.1
VPS33B-203ENST00000554264 NGLY1Q96IV0 654 aa8.15□□□□□ -1.1
VPS33B-203ENST00000554264 QTRT2Q9H974 415 aaKnown RBP8.15□□□□□ -1.1
VPS33B-203ENST00000554264 ATAD2Q6PL18 1390 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 PPFIA3O75145 1194 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 PHKA2P46019 1235 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 FOXK2Q01167 660 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 C4orf17Q53FE4 359 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 CCDC155Q8N6L0 562 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 C8orf37Q96NL8 207 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 NXF1Q9UBU9 619 aaKnown RBP8.14□□□□□ -1.11
VPS33B-203ENST00000554264 ZMIZ1Q9ULJ6 1067 aa8.14□□□□□ -1.11
VPS33B-203ENST00000554264 MST1RQ04912 1400 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 PTPRUQ92729 1446 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 CDK2AP1O14519 115 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 TERTO14746 1132 aaKnown RBP8.13□□□□□ -1.11
VPS33B-203ENST00000554264 NFX1Q12986 1120 aaKnown RBP8.13□□□□□ -1.11
VPS33B-203ENST00000554264 TBCELQ5QJ74 424 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 ERICH6BQ5W0A0 696 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 TMEM214Q6NUQ4 689 aaKnown RBP8.13□□□□□ -1.11
VPS33B-203ENST00000554264 ARID3AQ99856 593 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 SCHIP1Q9P0W5 487 aaPredicted RBP8.13□□□□□ -1.11
VPS33B-203ENST00000554264 MYO5BQ9ULV0 1848 aa8.13□□□□□ -1.11
VPS33B-203ENST00000554264 PNPLA6Q8IY17 1366 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 BACH1O14867 736 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 SEC13P55735 322 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 LCE2AQ5TA79 106 aaPredicted RBP8.12□□□□□ -1.11
VPS33B-203ENST00000554264 TAS1R3Q7RTX0 852 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 GAS2L2Q8NHY3 880 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 PBXIP1Q96AQ6 731 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 CUEDC1Q9NWM3 386 aaPredicted RBP8.12□□□□□ -1.11
VPS33B-203ENST00000554264 HFM1A2PYH4 1435 aa8.12□□□□□ -1.11
VPS33B-203ENST00000554264 NHSL1Q5SYE7 1610 aa8.11□□□□□ -1.11
VPS33B-203ENST00000554264 M0R2N6 131 aa8.11□□□□□ -1.11
VPS33B-203ENST00000554264 C21orf2O43822 256 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms