RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ANKARQ7Z5J8 1434 aa6.74□□□□□ -1.33
VTI1B-202ENST00000553619 ADGRB2O60241 1585 aa6.74□□□□□ -1.33
VTI1B-202ENST00000553619 BRD4O60885 1362 aaPredicted RBP6.73□□□□□ -1.33
VTI1B-202ENST00000553619 MSH6P52701 1360 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 MEN1O00255 615 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 GAS6Q14393 721 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 MORC1Q86VD1 984 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 KCTD17Q8N5Z5 321 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 BANK1Q8NDB2 785 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 NDUFB9Q9Y6M9 179 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 PPIP5K1Q6PFW1 1433 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 ADGRL3Q9HAR2 1447 aa6.73□□□□□ -1.33
VTI1B-202ENST00000553619 MYBBP1AQ9BQG0 1328 aaKnown RBP6.73□□□□□ -1.33
VTI1B-202ENST00000553619 NSD2O96028 1365 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 TMEM94Q12767 1356 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ARHGEF15O94989 841 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ADAMTS2O95450 1211 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 SCTRP47872 440 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ERVK-9P63128 1117 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 RASSF7Q02833 373 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 PSME1Q06323 249 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ESCO1Q5FWF5 840 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 CC2D1BQ5T0F9 858 aaKnown RBP6.72□□□□□ -1.33
VTI1B-202ENST00000553619 DCCP43146 1447 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ITSN1Q15811 1721 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ACEP12821 1306 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 TTC21AQ8NDW8 1320 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 ATP7BP35670 1465 aa6.72□□□□□ -1.33
VTI1B-202ENST00000553619 NSD3Q9BZ95 1437 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 A0A1W2PRU2 124 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 MCCD1P59942 119 aaPredicted RBP6.71□□□□□ -1.34
VTI1B-202ENST00000553619 NR1H3Q13133 447 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 CNGB1Q14028 1251 aaPredicted RBP6.71□□□□□ -1.34
VTI1B-202ENST00000553619 CC2D2BQ6DHV5 1058 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 CCDC125Q86Z20 511 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 MTMR14Q8NCE2 650 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 PMFBP1Q8TBY8 1022 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 ZNF837Q96EG3 531 aaPredicted RBP6.71□□□□□ -1.34
VTI1B-202ENST00000553619 ZNF335Q9H4Z2 1342 aaPredicted RBP6.71□□□□□ -1.34
VTI1B-202ENST00000553619 PRR36Q9H6K5 1346 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 MYOM1P52179 1685 aa6.71□□□□□ -1.34
VTI1B-202ENST00000553619 CDC42BPGQ6DT37 1551 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 CPSF1Q10570 1443 aaKnown RBP6.7□□□□□ -1.34
VTI1B-202ENST00000553619 EDC4Q6P2E9 1401 aaKnown RBP6.7□□□□□ -1.34
VTI1B-202ENST00000553619 RNF225M0QZC1 329 aaPredicted RBP6.7□□□□□ -1.34
VTI1B-202ENST00000553619 SOCS7O14512 581 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 FYB1O15117 783 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 GDF11O95390 407 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 GPC1P35052 558 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 RNF20Q5VTR2 975 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 LYPD4Q6UWN0 246 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 NLRP13Q86W25 1043 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 TMEM151AQ8N4L1 468 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 COG3Q96JB2 828 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 PCDHB11Q9Y5F2 797 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 FMN2Q9NZ56 1722 aa6.7□□□□□ -1.34
VTI1B-202ENST00000553619 A0A1W2PP64 1363 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 POLR3AO14802 1390 aaPredicted RBP6.69□□□□□ -1.34
VTI1B-202ENST00000553619 GPR25O00155 361 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 SRSF11Q05519 484 aaKnown RBP6.69□□□□□ -1.34
VTI1B-202ENST00000553619 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.69□□□□□ -1.34
VTI1B-202ENST00000553619 CFAP53Q96M91 514 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 MRS2Q9HD23 443 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 SLAIN2Q9P270 581 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 TTC21BQ7Z4L5 1316 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 RGPD8O14715 1765 aaPredicted RBP6.69□□□□□ -1.34
VTI1B-202ENST00000553619 PARD3Q8TEW0 1356 aa6.69□□□□□ -1.34
VTI1B-202ENST00000553619 STRCP1A6NGW2 1772 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 LRRC7Q96NW7 1537 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 PPP2R1AP30153 589 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 POU4F2Q12837 409 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 RIPOR1Q6ZS17 1223 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 KRT28Q7Z3Y7 464 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 CYP2U1Q7Z449 544 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 TRIM22Q8IYM9 498 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 OSBPL3Q9H4L5 887 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 ARHGEF10LQ9HCE6 1279 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 USP32Q8NFA0 1604 aa6.68□□□□□ -1.34
VTI1B-202ENST00000553619 NALCNQ8IZF0 1738 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 C1orf167Q5SNV9 1468 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 AKAP12Q02952 1782 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 FOXO3O43524 673 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 TRAK2O60296 914 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 TOM1O60784 492 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 CELA2BP08218 269 aaPredicted RBP6.67□□□□□ -1.34
VTI1B-202ENST00000553619 IRS1P35568 1242 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 CLN3Q13286 438 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 DBN1Q16643 649 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 SLC27A3Q5K4L6 730 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 ABTB2Q8N961 1025 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 NLRP3Q96P20 1036 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 ORAI2Q96SN7 254 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 PNNQ9H307 717 aaKnown RBP6.67□□□□□ -1.34
VTI1B-202ENST00000553619 GGNBP2Q9H3C7 697 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 SNRKQ9NRH2 765 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 RAB6BQ9NRW1 208 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 NUDCQ9Y266 331 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 NPHP3Q7Z494 1330 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 USP6P35125 1406 aa6.67□□□□□ -1.34
VTI1B-202ENST00000553619 CD163L1Q9NR16 1453 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms