RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ANKRD31Q8N7Z5 1873 aa10.15□□□□□ -0.79
NEK3-201ENST00000550331 CTCFP49711 727 aaPredicted RBP10.14□□□□□ -0.79
NEK3-201ENST00000550331 ST5P78524 1137 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 ERFEQ4G0M1 354 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 CLEC4GQ6UXB4 293 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 MCM10Q7L590 875 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 ZNF622Q969S3 477 aaKnown RBP eCLIP10.14□□□□□ -0.79
NEK3-201ENST00000550331 ZNF652Q9Y2D9 606 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 USP16Q9Y5T5 823 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 CNTNAP1P78357 1384 aa10.14□□□□□ -0.79
NEK3-201ENST00000550331 COL11A2P13942 1736 aaPredicted RBP10.13□□□□□ -0.79
NEK3-201ENST00000550331 LTBP3Q9NS15 1303 aa10.13□□□□□ -0.79
NEK3-201ENST00000550331 NPHP1O15259 732 aa10.13□□□□□ -0.79
NEK3-201ENST00000550331 SOGA3Q5TF21 947 aa10.13□□□□□ -0.79
NEK3-201ENST00000550331 STYK1Q6J9G0 422 aa10.13□□□□□ -0.79
NEK3-201ENST00000550331 MRPL50Q8N5N7 158 aaKnown RBP10.13□□□□□ -0.79
NEK3-201ENST00000550331 CNKSR1Q969H4 720 aa10.13□□□□□ -0.79
NEK3-201ENST00000550331 RNF25Q96BH1 459 aaPredicted RBP10.13□□□□□ -0.79
NEK3-201ENST00000550331 BCORQ6W2J9 1755 aa10.13□□□□□ -0.79
NEK3-201ENST00000550331 SCN4AP35499 1836 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 PRAMEF22A3QJZ6 481 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 C21orf2O43822 256 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 NEFMP07197 916 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 SRGNP10124 158 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 TAF7Q15545 349 aaPredicted RBP10.12□□□□□ -0.79
NEK3-201ENST00000550331 CCDC24Q8N4L8 307 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 MASTLQ96GX5 879 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 TAOK3Q9H2K8 898 aa10.12□□□□□ -0.79
NEK3-201ENST00000550331 GFRA3O60609 400 aa10.11□□□□□ -0.79
NEK3-201ENST00000550331 DDNO94850 711 aaPredicted RBP10.11□□□□□ -0.79
NEK3-201ENST00000550331 VEGFBP49765 207 aa10.11□□□□□ -0.79
NEK3-201ENST00000550331 DCTN1Q14203 1278 aa10.11□□□□□ -0.79
NEK3-201ENST00000550331 PRPF40BQ6NWY9 871 aaKnown RBP10.11□□□□□ -0.79
NEK3-201ENST00000550331 NBPF5PQ86XG9 351 aaPredicted RBP10.11□□□□□ -0.79
NEK3-201ENST00000550331 MFRPQ9BY79 579 aa10.11□□□□□ -0.79
NEK3-201ENST00000550331 SLX4Q8IY92 1834 aa10.11□□□□□ -0.79
NEK3-201ENST00000550331 KLRG2A4D1S0 409 aaPredicted RBP10.1□□□□□ -0.79
NEK3-201ENST00000550331 NBPF26B4DH59 902 aa10.1□□□□□ -0.79
NEK3-201ENST00000550331 PIP4K2AP48426 406 aaPredicted RBP10.1□□□□□ -0.79
NEK3-201ENST00000550331 LBX1P52954 281 aa10.1□□□□□ -0.79
NEK3-201ENST00000550331 FAM161AQ3B820 660 aa10.1□□□□□ -0.79
NEK3-201ENST00000550331 NBPF10Q6P3W6 841 aaKnown RBP10.1□□□□□ -0.79
NEK3-201ENST00000550331 TPTE2Q6XPS3 522 aa10.1□□□□□ -0.79
NEK3-201ENST00000550331 NBPF15Q8N660 670 aa10.1□□□□□ -0.79
NEK3-201ENST00000550331 PNISRQ8TF01 805 aaKnown RBP10.1□□□□□ -0.79
NEK3-201ENST00000550331 ARFGEF2Q9Y6D5 1785 aa10.1□□□□□ -0.79
NEK3-201ENST00000550331 TMEM88BA6NKF7 163 aa10.09□□□□□ -0.79
NEK3-201ENST00000550331 NPR1P16066 1061 aa10.09□□□□□ -0.79
NEK3-201ENST00000550331 ABHD8Q96I13 439 aa10.09□□□□□ -0.79
NEK3-201ENST00000550331 PLEKHF1Q96S99 279 aa10.09□□□□□ -0.79
NEK3-201ENST00000550331 PNNQ9H307 717 aaKnown RBP10.09□□□□□ -0.79
NEK3-201ENST00000550331 WBP1LQ9NX94 342 aa10.09□□□□□ -0.79
NEK3-201ENST00000550331 NIP7Q9Y221 180 aaKnown RBP eCLIP10.09□□□□□ -0.79
NEK3-201ENST00000550331 PASKQ96RG2 1323 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 IQCA1LA6NCM1 817 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 TBC1D12O60347 775 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 NFE2L2Q16236 605 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 CCDC93Q567U6 631 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 LDHDQ86WU2 507 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 C7orf43Q8WVR3 580 aa10.08□□□□□ -0.8
NEK3-201ENST00000550331 LAMB4A4D0S4 1761 aa10.07□□□□□ -0.8
NEK3-201ENST00000550331 ERVV-1B6SEH8 477 aa10.07□□□□□ -0.8
NEK3-201ENST00000550331 HSPA8P11142 646 aaKnown RBP10.07□□□□□ -0.8
NEK3-201ENST00000550331 EAPPQ56P03 285 aaPredicted RBP10.07□□□□□ -0.8
NEK3-201ENST00000550331 TAF1DQ9H5J8 278 aaPredicted RBP10.07□□□□□ -0.8
NEK3-201ENST00000550331 MIS18AQ9NYP9 233 aa10.07□□□□□ -0.8
NEK3-201ENST00000550331 RIC1Q4ADV7 1423 aa10.07□□□□□ -0.8
NEK3-201ENST00000550331 MAPK8IP3Q9UPT6 1336 aa10.07□□□□□ -0.8
NEK3-201ENST00000550331 IBTKQ9P2D0 1353 aaPredicted RBP10.06□□□□□ -0.8
NEK3-201ENST00000550331 EIF4A1P60842 406 aaKnown RBP10.06□□□□□ -0.8
NEK3-201ENST00000550331 FKBP4Q02790 459 aaKnown RBP eCLIP10.06□□□□□ -0.8
NEK3-201ENST00000550331 HLFQ16534 295 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 RTKN2Q8IZC4 609 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 NYXQ9GZU5 481 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 NBPF3Q9H094 633 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 KDM3BQ7LBC6 1761 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 ADAMTSL1Q8N6G6 1762 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 ERBB4Q15303 1308 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 MAP3K15Q6ZN16 1313 aa10.06□□□□□ -0.8
NEK3-201ENST00000550331 CCDC85CA6NKD9 419 aa10.05□□□□□ -0.8
NEK3-201ENST00000550331 GTF2E1P29083 439 aaPredicted RBP10.05□□□□□ -0.8
NEK3-201ENST00000550331 ALDH1B1P30837 517 aa10.05□□□□□ -0.8
NEK3-201ENST00000550331 MLLT1Q03111 559 aaPredicted RBP10.05□□□□□ -0.8
NEK3-201ENST00000550331 CRY2Q49AN0 593 aa10.05□□□□□ -0.8
NEK3-201ENST00000550331 ZNF787Q6DD87 383 aa10.05□□□□□ -0.8
NEK3-201ENST00000550331 KIF6Q6ZMV9 814 aa10.05□□□□□ -0.8
NEK3-201ENST00000550331 ABCC12Q96J65 1359 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 RASSF10A6NK89 507 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 FAM177BA6PVY3 158 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 MAP2K1Q02750 393 aaPredicted RBP10.04□□□□□ -0.8
NEK3-201ENST00000550331 DEFB115Q30KQ5 88 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 CC2D2BQ6DHV5 1058 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 THUMPD2Q9BTF0 503 aaKnown RBP10.04□□□□□ -0.8
NEK3-201ENST00000550331 ZBED2Q9BTP6 218 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 HACL1Q9UJ83 578 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 SNED1Q8TER0 1413 aa10.04□□□□□ -0.8
NEK3-201ENST00000550331 WDR33Q9C0J8 1336 aaKnown RBP10.04□□□□□ -0.8
NEK3-201ENST00000550331 NRG2O14511 850 aaPredicted RBP10.03□□□□□ -0.8
NEK3-201ENST00000550331 RALBP1Q15311 655 aa10.03□□□□□ -0.8
NEK3-201ENST00000550331 GRIPAP1Q4V328 841 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms