RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GPC2Q8N158 579 aa21.05■□□□□ 0.96
VPS29-207ENST00000549970 KLRG1Q96E93 195 aa21.05■□□□□ 0.96
VPS29-207ENST00000549970 DDX58O95786 925 aaKnown RBP21.04■□□□□ 0.96
VPS29-207ENST00000549970 LDHDQ86WU2 507 aa21.04■□□□□ 0.96
VPS29-207ENST00000549970 MPNDQ8N594 471 aa21.04■□□□□ 0.96
VPS29-207ENST00000549970 EPHX2P34913 555 aa21.03■□□□□ 0.96
VPS29-207ENST00000549970 SF3B3Q15393 1217 aaKnown RBP21.03■□□□□ 0.96
VPS29-207ENST00000549970 TWISTNBQ3B726 338 aaPredicted RBP21.03■□□□□ 0.96
VPS29-207ENST00000549970 SUPT20HQ8NEM7 779 aa21.03■□□□□ 0.96
VPS29-207ENST00000549970 STK31Q9BXU1 1019 aa21.03■□□□□ 0.96
VPS29-207ENST00000549970 IL16Q14005 1332 aa21.03■□□□□ 0.96
VPS29-207ENST00000549970 NCBP3Q53F19 620 aaKnown RBP21.02■□□□□ 0.96
VPS29-207ENST00000549970 ZBTB38Q8NAP3 1195 aaPredicted RBP21.02■□□□□ 0.96
VPS29-207ENST00000549970 CELF1Q92879 486 aaKnown RBP21.02■□□□□ 0.96
VPS29-207ENST00000549970 METTL22Q9BUU2 404 aaPredicted RBP21.02■□□□□ 0.96
VPS29-207ENST00000549970 RTFDC1Q9BY42 306 aaPredicted RBP21.02■□□□□ 0.96
VPS29-207ENST00000549970 MAP3K2Q9Y2U5 619 aa21.02■□□□□ 0.96
VPS29-207ENST00000549970 TMC4Q7Z404 712 aa21.01■□□□□ 0.95
VPS29-207ENST00000549970 CCDC191Q8NCU4 936 aa21.01■□□□□ 0.95
VPS29-207ENST00000549970 VPS33BQ9H267 617 aa21.01■□□□□ 0.95
VPS29-207ENST00000549970 CWC25Q9NXE8 425 aaPredicted RBP21.01■□□□□ 0.95
VPS29-207ENST00000549970 CLEC11AQ9Y240 323 aa21.01■□□□□ 0.95
VPS29-207ENST00000549970 PCNTO95613 3336 aa21.01■□□□□ 0.95
VPS29-207ENST00000549970 FAM9BQ8IZU0 186 aa21■□□□□ 0.95
VPS29-207ENST00000549970 JARID2Q92833 1246 aaPredicted RBP21■□□□□ 0.95
VPS29-207ENST00000549970 FANCIQ9NVI1 1328 aa21■□□□□ 0.95
VPS29-207ENST00000549970 COL4A1P02462 1669 aa20.99■□□□□ 0.95
VPS29-207ENST00000549970 LRRC37AA6NMS7 1700 aa20.99■□□□□ 0.95
VPS29-207ENST00000549970 PI4KAP2A4QPH2 592 aa20.99■□□□□ 0.95
VPS29-207ENST00000549970 LMOD1P29536 600 aaPredicted RBP20.99■□□□□ 0.95
VPS29-207ENST00000549970 PNMA8AQ86V59 439 aaPredicted RBP20.99■□□□□ 0.95
VPS29-207ENST00000549970 PI4KAP1Q8N8J0 262 aa20.99■□□□□ 0.95
VPS29-207ENST00000549970 LTBP1Q14766 1721 aa20.98■□□□□ 0.95
VPS29-207ENST00000549970 PCCAP05165 728 aaPredicted RBP20.98■□□□□ 0.95
VPS29-207ENST00000549970 SCNN1DP51172 638 aa20.98■□□□□ 0.95
VPS29-207ENST00000549970 KIAA2012Q0VF49 1180 aa20.98■□□□□ 0.95
VPS29-207ENST00000549970 KSR2Q6VAB6 950 aa20.98■□□□□ 0.95
VPS29-207ENST00000549970 ZNRF3Q9ULT6 936 aa20.98■□□□□ 0.95
VPS29-207ENST00000549970 DUOX1Q9NRD9 1551 aa20.97■□□□□ 0.95
VPS29-207ENST00000549970 ADAMTSL1Q8N6G6 1762 aa20.97■□□□□ 0.95
VPS29-207ENST00000549970 SLC4A2P04920 1241 aa20.97■□□□□ 0.95
VPS29-207ENST00000549970 HSP90B1P14625 803 aaKnown RBP20.97■□□□□ 0.95
VPS29-207ENST00000549970 G2E3Q7L622 706 aa20.97■□□□□ 0.95
VPS29-207ENST00000549970 WDR63Q8IWG1 891 aa20.97■□□□□ 0.95
VPS29-207ENST00000549970 NSFL1CQ9UNZ2 370 aaKnown RBP20.97■□□□□ 0.95
VPS29-207ENST00000549970 PDE8AO60658 829 aa20.96■□□□□ 0.95
VPS29-207ENST00000549970 EPS15P42566 896 aa20.96■□□□□ 0.95
VPS29-207ENST00000549970 CXCL9Q07325 125 aa20.96■□□□□ 0.95
VPS29-207ENST00000549970 JMYQ8N9B5 988 aa20.96■□□□□ 0.95
VPS29-207ENST00000549970 CCDC85AQ96PX6 553 aaPredicted RBP20.96■□□□□ 0.95
VPS29-207ENST00000549970 SEC31BQ9NQW1 1179 aa20.96■□□□□ 0.95
VPS29-207ENST00000549970 PASKQ96RG2 1323 aa20.96■□□□□ 0.95
VPS29-207ENST00000549970 IGKV5-2P06315 115 aa20.95■□□□□ 0.94
VPS29-207ENST00000549970 RPS8P62241 208 aaKnown RBP20.95■□□□□ 0.94
VPS29-207ENST00000549970 NEXNQ0ZGT2 675 aa20.95■□□□□ 0.94
VPS29-207ENST00000549970 MAP1SQ66K74 1059 aaPredicted RBP20.95■□□□□ 0.94
VPS29-207ENST00000549970 CREBZFQ9NS37 354 aa20.95■□□□□ 0.94
VPS29-207ENST00000549970 ITGBL1O95965 494 aaPredicted RBP20.94■□□□□ 0.94
VPS29-207ENST00000549970 GPSM2P81274 684 aa20.94■□□□□ 0.94
VPS29-207ENST00000549970 CCDC152Q4G0S7 254 aa20.94■□□□□ 0.94
VPS29-207ENST00000549970 C6orf229H3BNL8 230 aa20.93■□□□□ 0.94
VPS29-207ENST00000549970 RAD17O75943 681 aa20.93■□□□□ 0.94
VPS29-207ENST00000549970 EXOSC9Q06265 439 aaKnown RBP20.93■□□□□ 0.94
VPS29-207ENST00000549970 CWF19L2Q2TBE0 894 aaKnown RBP20.93■□□□□ 0.94
VPS29-207ENST00000549970 CIAPIN1Q6FI81 312 aa20.93■□□□□ 0.94
VPS29-207ENST00000549970 CNTROBQ8N137 903 aa20.93■□□□□ 0.94
VPS29-207ENST00000549970 RIMBP2O15034 1052 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 VAMP4O75379 141 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 FLIIQ13045 1269 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 WASHC4Q2M389 1173 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 SPINK5Q9NQ38 1064 aaPredicted RBP20.92■□□□□ 0.94
VPS29-207ENST00000549970 GPRC5DQ9NZD1 345 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 POLLQ9UGP5 575 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 CDHR2Q9BYE9 1310 aa20.92■□□□□ 0.94
VPS29-207ENST00000549970 YDJCA8MPS7 323 aa20.91■□□□□ 0.94
VPS29-207ENST00000549970 NEURL1BA8MQ27 555 aa20.91■□□□□ 0.94
VPS29-207ENST00000549970 GMPSP49915 693 aaPredicted RBP20.91■□□□□ 0.94
VPS29-207ENST00000549970 FKBP5Q13451 457 aaPredicted RBP20.91■□□□□ 0.94
VPS29-207ENST00000549970 MKRN1Q9UHC7 482 aaKnown RBP20.91■□□□□ 0.94
VPS29-207ENST00000549970 CTSWP56202 376 aa20.9■□□□□ 0.94
VPS29-207ENST00000549970 TNIP1Q15025 636 aa20.9■□□□□ 0.94
VPS29-207ENST00000549970 USP50Q70EL3 339 aaPredicted RBP20.9■□□□□ 0.94
VPS29-207ENST00000549970 GPR101Q96P66 508 aaPredicted RBP20.9■□□□□ 0.94
VPS29-207ENST00000549970 BCL2L13Q9BXK5 485 aa20.9■□□□□ 0.94
VPS29-207ENST00000549970 DBNDD1Q9H9R9 158 aa20.9■□□□□ 0.94
VPS29-207ENST00000549970 CACNA1FO60840 1977 aa20.9■□□□□ 0.94
VPS29-207ENST00000549970 TMEM88BA6NKF7 163 aa20.89■□□□□ 0.93
VPS29-207ENST00000549970 TBC1D16Q8TBP0 767 aa20.89■□□□□ 0.93
VPS29-207ENST00000549970 EYA3Q99504 573 aa20.89■□□□□ 0.93
VPS29-207ENST00000549970 MYH16Q9H6N6 1097 aa20.89■□□□□ 0.93
VPS29-207ENST00000549970 ADARB2Q9NS39 739 aaKnown RBP20.89■□□□□ 0.93
VPS29-207ENST00000549970 ANKIB1Q9P2G1 1089 aa20.89■□□□□ 0.93
VPS29-207ENST00000549970 MYH3P11055 1940 aa20.88■□□□□ 0.93
VPS29-207ENST00000549970 UBE3BQ7Z3V4 1068 aa20.88■□□□□ 0.93
VPS29-207ENST00000549970 ANKRD18AQ8IVF6 992 aa20.88■□□□□ 0.93
VPS29-207ENST00000549970 UFL1O94874 794 aa20.87■□□□□ 0.93
VPS29-207ENST00000549970 DOK7Q18PE1 504 aa20.87■□□□□ 0.93
VPS29-207ENST00000549970 DNAAF4Q8WXU2 420 aa20.87■□□□□ 0.93
VPS29-207ENST00000549970 PODXL2Q9NZ53 605 aa20.87■□□□□ 0.93
VPS29-207ENST00000549970 ECE2O60344 883 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms