RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	TNIP1	Q15025	636 aa		30	■■■□□ 2.39
SMARCD1-204	ENST00000547637	GPRC5D	Q9NZD1	345 aa		30	■■■□□ 2.39
SMARCD1-204	ENST00000547637	TRIM35	Q9UPQ4	493 aa		30	■■■□□ 2.39
SMARCD1-204	ENST00000547637	COL4A5	P29400	1685 aa		29.99	■■■□□ 2.39
SMARCD1-204	ENST00000547637	CFAP44	Q96MT7	982 aa		29.99	■■■□□ 2.39
SMARCD1-204	ENST00000547637	BCL2L13	Q9BXK5	485 aa		29.99	■■■□□ 2.39
SMARCD1-204	ENST00000547637	HYPK	Q9NX55	129 aa		29.99	■■■□□ 2.39
SMARCD1-204	ENST00000547637	ECE1	P42892	770 aa		29.98	■■■□□ 2.39
SMARCD1-204	ENST00000547637	CXCL9	Q07325	125 aa		29.98	■■■□□ 2.39
SMARCD1-204	ENST00000547637	KIAA2012	Q0VF49	1180 aa		29.98	■■■□□ 2.39
SMARCD1-204	ENST00000547637	KRT24	Q2M2I5	525 aa		29.98	■■■□□ 2.39
SMARCD1-204	ENST00000547637	CIAPIN1	Q6FI81	312 aa		29.98	■■■□□ 2.39
SMARCD1-204	ENST00000547637	ADAMTS8	Q9UP79	889 aa		29.98	■■■□□ 2.39
SMARCD1-204	ENST00000547637	WDR33	Q9C0J8	1336 aa	Known RBP	29.97	■■■□□ 2.39
SMARCD1-204	ENST00000547637	WBP1L	Q9NX94	342 aa		29.97	■■■□□ 2.39
SMARCD1-204	ENST00000547637	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	29.96	■■■□□ 2.39
SMARCD1-204	ENST00000547637	CDHR2	Q9BYE9	1310 aa		29.96	■■■□□ 2.39
SMARCD1-204	ENST00000547637	HSP90B1	P14625	803 aa	Known RBP	29.95	■■■□□ 2.39
SMARCD1-204	ENST00000547637	CALD1	Q05682	793 aa	Known RBP	29.95	■■■□□ 2.39
SMARCD1-204	ENST00000547637	DUSP27	Q5VZP5	1158 aa		29.94	■■■□□ 2.38
SMARCD1-204	ENST00000547637	BEGAIN	Q9BUH8	593 aa		29.94	■■■□□ 2.38
SMARCD1-204	ENST00000547637	CHMP4A	Q9BY43	222 aa		29.94	■■■□□ 2.38
SMARCD1-204	ENST00000547637	GMPS	P49915	693 aa	Predicted RBP	29.93	■■■□□ 2.38
SMARCD1-204	ENST00000547637	SLC51A	Q86UW1	340 aa		29.93	■■■□□ 2.38
SMARCD1-204	ENST00000547637	LAMB2	P55268	1798 aa		29.92	■■■□□ 2.38
SMARCD1-204	ENST00000547637	LTBP1	Q14766	1721 aa		29.92	■■■□□ 2.38
SMARCD1-204	ENST00000547637	FAM89A	Q96GI7	184 aa		29.92	■■■□□ 2.38
SMARCD1-204	ENST00000547637	ISCA1	Q9BUE6	129 aa		29.92	■■■□□ 2.38
SMARCD1-204	ENST00000547637		H7C1D1	291 aa		29.91	■■■□□ 2.38
SMARCD1-204	ENST00000547637	SF3B3	Q15393	1217 aa	Known RBP	29.91	■■■□□ 2.38
SMARCD1-204	ENST00000547637	RIC3	Q7Z5B4	369 aa		29.91	■■■□□ 2.38
SMARCD1-204	ENST00000547637	ZC3H15	Q8WU90	426 aa	Known RBP	29.91	■■■□□ 2.38
SMARCD1-204	ENST00000547637	NSFL1C	Q9UNZ2	370 aa	Known RBP	29.91	■■■□□ 2.38
SMARCD1-204	ENST00000547637	ATP5J2-PTCD1	G3V325	749 aa		29.9	■■■□□ 2.38
SMARCD1-204	ENST00000547637	RAD17	O75943	681 aa		29.9	■■■□□ 2.38
SMARCD1-204	ENST00000547637	GOLGA2	Q08379	1002 aa		29.9	■■■□□ 2.38
SMARCD1-204	ENST00000547637	WASHC4	Q2M389	1173 aa		29.9	■■■□□ 2.38
SMARCD1-204	ENST00000547637	GNAI1	P63096	354 aa		29.89	■■■□□ 2.38
SMARCD1-204	ENST00000547637	TRIM28	Q13263	835 aa	Known RBP	29.89	■■■□□ 2.38
SMARCD1-204	ENST00000547637	CAPNS2	Q96L46	248 aa		29.89	■■■□□ 2.38
SMARCD1-204	ENST00000547637	TRPM7	Q96QT4	1865 aa		29.89	■■■□□ 2.37
SMARCD1-204	ENST00000547637	LBX1	P52954	281 aa		29.88	■■■□□ 2.37
SMARCD1-204	ENST00000547637	EYA3	Q99504	573 aa		29.88	■■■□□ 2.37
SMARCD1-204	ENST00000547637	MBIP	Q9NS73	344 aa		29.88	■■■□□ 2.37
SMARCD1-204	ENST00000547637	GRM1	Q13255	1194 aa		29.87	■■■□□ 2.37
SMARCD1-204	ENST00000547637	ZNF428	Q96B54	188 aa		29.87	■■■□□ 2.37
SMARCD1-204	ENST00000547637	CNOT7	Q9UIV1	285 aa	Known RBP	29.87	■■■□□ 2.37
SMARCD1-204	ENST00000547637	TLL2	Q9Y6L7	1015 aa		29.87	■■■□□ 2.37
SMARCD1-204	ENST00000547637	C6orf229	H3BNL8	230 aa		29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	TRAF5	O00463	557 aa		29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	IRS4	O14654	1257 aa	Predicted RBP	29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	CST9	Q5W186	159 aa		29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	CDC37L1	Q7L3B6	337 aa		29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	GPR101	Q96P66	508 aa	Predicted RBP	29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	PRKRIP1	Q9H875	184 aa	Predicted RBP	29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	IFT57	Q9NWB7	429 aa		29.86	■■■□□ 2.37
SMARCD1-204	ENST00000547637	FMR1	Q06787	632 aa	Known RBP eCLIP	29.85	■■■□□ 2.37	4e-6	■■□□□ 12.4
SMARCD1-204	ENST00000547637	RTL5	Q5HYW3	569 aa	Predicted RBP	29.85	■■■□□ 2.37
SMARCD1-204	ENST00000547637	PGAP2	Q9UHJ9	254 aa		29.85	■■■□□ 2.37
SMARCD1-204	ENST00000547637	CELF2	O95319	508 aa	Known RBP	29.84	■■■□□ 2.37
SMARCD1-204	ENST00000547637	CELF1	Q92879	486 aa	Known RBP	29.84	■■■□□ 2.37
SMARCD1-204	ENST00000547637	RPS8	P62241	208 aa	Known RBP	29.83	■■■□□ 2.37
SMARCD1-204	ENST00000547637	CYP4F22	Q6NT55	531 aa		29.83	■■■□□ 2.37
SMARCD1-204	ENST00000547637	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	29.83	■■■□□ 2.37
SMARCD1-204	ENST00000547637	DPF2	Q92785	391 aa		29.83	■■■□□ 2.37
SMARCD1-204	ENST00000547637	TAF1	P21675	1872 aa		29.82	■■■□□ 2.37
SMARCD1-204	ENST00000547637	APAF1	O14727	1248 aa		29.82	■■■□□ 2.36
SMARCD1-204	ENST00000547637	DDX58	O95786	925 aa	Known RBP	29.82	■■■□□ 2.36
SMARCD1-204	ENST00000547637	ZNF853	P0CG23	659 aa		29.82	■■■□□ 2.36
SMARCD1-204	ENST00000547637	MAP2K2	P36507	400 aa		29.82	■■■□□ 2.36
SMARCD1-204	ENST00000547637		G3V3G9	751 aa		29.81	■■■□□ 2.36
SMARCD1-204	ENST00000547637	RIMBP2	O15034	1052 aa		29.81	■■■□□ 2.36
SMARCD1-204	ENST00000547637	DCAF8	Q5TAQ9	597 aa		29.81	■■■□□ 2.36
SMARCD1-204	ENST00000547637	MICALL2	Q8IY33	904 aa		29.81	■■■□□ 2.36
SMARCD1-204	ENST00000547637	GLIS2	Q9BZE0	524 aa	Predicted RBP	29.81	■■■□□ 2.36
SMARCD1-204	ENST00000547637	YDJC	A8MPS7	323 aa		29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	ELL2	O00472	640 aa	Predicted RBP	29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	HSPA8	P11142	646 aa	Known RBP	29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	SAPCD2	Q86UD0	394 aa		29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	HHIPL1	Q96JK4	782 aa		29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	ZC3H12C	Q9C0D7	883 aa	Known RBP	29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	ZNF408	Q9H9D4	720 aa		29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	DBNDD1	Q9H9R9	158 aa		29.8	■■■□□ 2.36
SMARCD1-204	ENST00000547637	DDX60	Q8IY21	1712 aa	Known RBP	29.79	■■■□□ 2.36
SMARCD1-204	ENST00000547637	RPS12	P25398	132 aa	Known RBP	29.79	■■■□□ 2.36
SMARCD1-204	ENST00000547637	CCDC191	Q8NCU4	936 aa		29.79	■■■□□ 2.36
SMARCD1-204	ENST00000547637	GPSM2	P81274	684 aa		29.78	■■■□□ 2.36
SMARCD1-204	ENST00000547637	CCDC152	Q4G0S7	254 aa		29.78	■■■□□ 2.36
SMARCD1-204	ENST00000547637	CCDC30	Q5VVM6	783 aa		29.78	■■■□□ 2.36
SMARCD1-204	ENST00000547637	MYD88	Q99836	296 aa		29.78	■■■□□ 2.36
SMARCD1-204	ENST00000547637	POLL	Q9UGP5	575 aa		29.78	■■■□□ 2.36
SMARCD1-204	ENST00000547637	PSMD14	O00487	310 aa		29.77	■■■□□ 2.36
SMARCD1-204	ENST00000547637	HIRA	P54198	1017 aa	Predicted RBP	29.77	■■■□□ 2.36
SMARCD1-204	ENST00000547637	PHAX	Q9H814	394 aa	Known RBP	29.77	■■■□□ 2.36
SMARCD1-204	ENST00000547637	ANKIB1	Q9P2G1	1089 aa		29.77	■■■□□ 2.36
SMARCD1-204	ENST00000547637	LRRC37A	A6NMS7	1700 aa		29.76	■■■□□ 2.36
SMARCD1-204	ENST00000547637	ECE2	O60344	883 aa		29.76	■■■□□ 2.35
SMARCD1-204	ENST00000547637	TRPM4	Q8TD43	1214 aa		29.76	■■■□□ 2.35
SMARCD1-204	ENST00000547637	ZBTB12	Q9Y330	459 aa	Predicted RBP	29.76	■■■□□ 2.35
SMARCD1-204	ENST00000547637	CA12	O43570	354 aa		29.75	■■■□□ 2.35

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms