RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 NMRK2Q9NPI5 230 aa14.61□□□□□ -0.07
YBX3-216ENST00000544622 ZNF277Q9NRM2 450 aaPredicted RBP14.61□□□□□ -0.07
YBX3-216ENST00000544622 KDM2BQ8NHM5 1336 aa14.61□□□□□ -0.07
YBX3-216ENST00000544622 POTECB2RU33 542 aa14.6□□□□□ -0.07
YBX3-216ENST00000544622 PDE8AO60658 829 aa14.6□□□□□ -0.07
YBX3-216ENST00000544622 HSP90B1P14625 803 aaKnown RBP14.6□□□□□ -0.07
YBX3-216ENST00000544622 CASP7P55210 303 aa14.6□□□□□ -0.07
YBX3-216ENST00000544622 GCKRQ14397 625 aa14.6□□□□□ -0.07
YBX3-216ENST00000544622 JARID2Q92833 1246 aaPredicted RBP14.6□□□□□ -0.07
YBX3-216ENST00000544622 CELF1Q92879 486 aaKnown RBP14.6□□□□□ -0.07
YBX3-216ENST00000544622 RTFDC1Q9BY42 306 aaPredicted RBP14.6□□□□□ -0.07
YBX3-216ENST00000544622 COL4A1P02462 1669 aa14.59□□□□□ -0.07
YBX3-216ENST00000544622 FZD9O00144 591 aa14.59□□□□□ -0.07
YBX3-216ENST00000544622 IARSP41252 1262 aaKnown RBP14.59□□□□□ -0.07
YBX3-216ENST00000544622 BEND3Q5T5X7 828 aa14.59□□□□□ -0.07
YBX3-216ENST00000544622 TMC4Q7Z404 712 aa14.59□□□□□ -0.07
YBX3-216ENST00000544622 MRPL50Q8N5N7 158 aaKnown RBP14.59□□□□□ -0.07
YBX3-216ENST00000544622 VPS33BQ9H267 617 aa14.59□□□□□ -0.07
YBX3-216ENST00000544622 CEP350Q5VT06 3117 aa14.58□□□□□ -0.08
YBX3-216ENST00000544622 F6X3S4 739 aa14.58□□□□□ -0.08
YBX3-216ENST00000544622 DPY19L2Q6NUT2 758 aa14.58□□□□□ -0.08
YBX3-216ENST00000544622 RRAGCQ9HB90 399 aa14.58□□□□□ -0.08
YBX3-216ENST00000544622 TIAM2Q8IVF5 1701 aa14.58□□□□□ -0.08
YBX3-216ENST00000544622 TAF1P21675 1872 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 TOMM70O94826 608 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 RPS8P62241 208 aaKnown RBP14.57□□□□□ -0.08
YBX3-216ENST00000544622 TTLL11Q8NHH1 800 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 SSH1Q8WYL5 1049 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 PLA2G12BQ9BX93 195 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 SEC31BQ9NQW1 1179 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 COL4A5P29400 1685 aa14.57□□□□□ -0.08
YBX3-216ENST00000544622 CT47B1P0C2W7 299 aaPredicted RBP14.56□□□□□ -0.08
YBX3-216ENST00000544622 ALDH1L2Q3SY69 923 aa14.56□□□□□ -0.08
YBX3-216ENST00000544622 CCDC152Q4G0S7 254 aa14.56□□□□□ -0.08
YBX3-216ENST00000544622 LRRC37AA6NMS7 1700 aa14.55□□□□□ -0.08
YBX3-216ENST00000544622 WDR90Q96KV7 1748 aa14.55□□□□□ -0.08
YBX3-216ENST00000544622 DDNO94850 711 aaPredicted RBP14.55□□□□□ -0.08
YBX3-216ENST00000544622 CSF1RP07333 972 aa14.55□□□□□ -0.08
YBX3-216ENST00000544622 VEGFAP15692 232 aaPredicted RBP14.55□□□□□ -0.08
YBX3-216ENST00000544622 CTSWP56202 376 aa14.55□□□□□ -0.08
YBX3-216ENST00000544622 MPNDQ8N594 471 aa14.55□□□□□ -0.08
YBX3-216ENST00000544622 L3MBTL3Q96JM7 780 aaPredicted RBP14.55□□□□□ -0.08
YBX3-216ENST00000544622 TMX4Q9H1E5 349 aaPredicted RBP14.55□□□□□ -0.08
YBX3-216ENST00000544622 RTL9Q8NET4 1388 aa14.55□□□□□ -0.08
YBX3-216ENST00000544622 BRPF1P55201 1214 aaPredicted RBP14.54□□□□□ -0.08
YBX3-216ENST00000544622 DPP8Q6V1X1 898 aaPredicted RBP14.54□□□□□ -0.08
YBX3-216ENST00000544622 UBE3BQ7Z3V4 1068 aa14.54□□□□□ -0.08
YBX3-216ENST00000544622 DUOX1Q9NRD9 1551 aa14.54□□□□□ -0.08
YBX3-216ENST00000544622 PTPRCP08575 1304 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 ZNF541Q9H0D2 1346 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 KIAA2012Q0VF49 1180 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 SUPT20HQ8NEM7 779 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 RBM46Q8TBY0 533 aaKnown RBP14.53□□□□□ -0.08
YBX3-216ENST00000544622 JDP2Q8WYK2 163 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 GREM2Q9H772 168 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 PODXL2Q9NZ53 605 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 POLLQ9UGP5 575 aa14.53□□□□□ -0.08
YBX3-216ENST00000544622 LTBP1Q14766 1721 aa14.52□□□□□ -0.08
YBX3-216ENST00000544622 ALDH1L1O75891 902 aa14.52□□□□□ -0.09
YBX3-216ENST00000544622 GPSM2P81274 684 aa14.52□□□□□ -0.09
YBX3-216ENST00000544622 FOXO4P98177 505 aa14.52□□□□□ -0.09
YBX3-216ENST00000544622 AOC3Q16853 763 aa14.52□□□□□ -0.09
YBX3-216ENST00000544622 LARGE2Q8N3Y3 721 aa14.52□□□□□ -0.09
YBX3-216ENST00000544622 CCDC85AQ96PX6 553 aaPredicted RBP14.52□□□□□ -0.09
YBX3-216ENST00000544622 NSFL1CQ9UNZ2 370 aaKnown RBP14.52□□□□□ -0.09
YBX3-216ENST00000544622 UTYO14607 1347 aa14.51□□□□□ -0.09
YBX3-216ENST00000544622 PPIP5K2O43314 1243 aa14.51□□□□□ -0.09
YBX3-216ENST00000544622 GPC2Q8N158 579 aa14.51□□□□□ -0.09
YBX3-216ENST00000544622 SRCIN1Q9C0H9 1055 aa14.51□□□□□ -0.09
YBX3-216ENST00000544622 BSDC1Q9NW68 430 aaPredicted RBP14.51□□□□□ -0.09
YBX3-216ENST00000544622 GRM8O00222 908 aa14.5□□□□□ -0.09
YBX3-216ENST00000544622 SLC4A10Q6U841 1118 aa14.5□□□□□ -0.09
YBX3-216ENST00000544622 ANKRD18AQ8IVF6 992 aa14.5□□□□□ -0.09
YBX3-216ENST00000544622 TBC1D16Q8TBP0 767 aa14.5□□□□□ -0.09
YBX3-216ENST00000544622 KAZALD1Q96I82 304 aa14.5□□□□□ -0.09
YBX3-216ENST00000544622 CDC5LQ99459 802 aaKnown RBP14.5□□□□□ -0.09
YBX3-216ENST00000544622 BCL2L13Q9BXK5 485 aa14.5□□□□□ -0.09
YBX3-216ENST00000544622 RARSP54136 660 aaKnown RBP14.49□□□□□ -0.09
YBX3-216ENST00000544622 FSTL1Q12841 308 aa14.49□□□□□ -0.09
YBX3-216ENST00000544622 EPHA10Q5JZY3 1008 aa14.49□□□□□ -0.09
YBX3-216ENST00000544622 ZNRF3Q9ULT6 936 aa14.49□□□□□ -0.09
YBX3-216ENST00000544622 IQCA1LA6NCM1 817 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 YDJCA8MPS7 323 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 NBPF7P0C2Y1 421 aaPredicted RBP14.48□□□□□ -0.09
YBX3-216ENST00000544622 HSPA6P17066 643 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 ITGA6P23229 1130 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 EIF6P56537 245 aaKnown RBP14.48□□□□□ -0.09
YBX3-216ENST00000544622 HNRNPUQ00839 825 aaKnown RBP eCLIP14.48□□□□□ -0.09
YBX3-216ENST00000544622 CXCL9Q07325 125 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 WASHC4Q2M389 1173 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 NIM1KQ8IY84 436 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 SMC4Q9NTJ3 1288 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 MINPP1Q9UNW1 487 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 MYH3P11055 1940 aa14.48□□□□□ -0.09
YBX3-216ENST00000544622 SCNN1DP51172 638 aa14.47□□□□□ -0.09
YBX3-216ENST00000544622 FAM161AQ3B820 660 aa14.47□□□□□ -0.09
YBX3-216ENST00000544622 C16orf71Q8IYS4 520 aaPredicted RBP14.47□□□□□ -0.09
YBX3-216ENST00000544622 TAF1DQ9H5J8 278 aaPredicted RBP14.47□□□□□ -0.09
YBX3-216ENST00000544622 SCN4AP35499 1836 aa14.46□□□□□ -0.09
YBX3-216ENST00000544622 WTIPA6NIX2 430 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms