RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ZNF594Q96JF6 807 aaPredicted RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 TLR7Q9NYK1 1049 aaKnown RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 CCNL1Q9UK58 526 aaPredicted RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 FPGT-TNNI3KV9GXZ4 949 aa17.41■□□□□ 0.38
VPS33A-209ENST00000544349 BCORQ6W2J9 1755 aa17.41■□□□□ 0.38
VPS33A-209ENST00000544349 MYH3P11055 1940 aa17.41■□□□□ 0.38
VPS33A-209ENST00000544349 EYA2O00167 538 aa17.41■□□□□ 0.38
VPS33A-209ENST00000544349 IL15P40933 162 aaPredicted RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 CNTROBQ8N137 903 aa17.41■□□□□ 0.38
VPS33A-209ENST00000544349 BCL11BQ9C0K0 894 aaPredicted RBP17.41■□□□□ 0.38
VPS33A-209ENST00000544349 BRWD3Q6RI45 1802 aa17.4■□□□□ 0.38
VPS33A-209ENST00000544349 K7ELQ4 463 aaPredicted RBP17.4■□□□□ 0.38
VPS33A-209ENST00000544349 CIAO1O76071 339 aa17.4■□□□□ 0.38
VPS33A-209ENST00000544349 PARP10Q53GL7 1025 aa17.4■□□□□ 0.38
VPS33A-209ENST00000544349 SUSD4Q5VX71 490 aa17.4■□□□□ 0.38
VPS33A-209ENST00000544349 TTLL11Q8NHH1 800 aa17.4■□□□□ 0.38
VPS33A-209ENST00000544349 PDE8AO60658 829 aa17.39■□□□□ 0.38
VPS33A-209ENST00000544349 LRRC24Q50LG9 513 aa17.39■□□□□ 0.38
VPS33A-209ENST00000544349 CLEC4GQ6UXB4 293 aa17.39■□□□□ 0.38
VPS33A-209ENST00000544349 USP26Q9BXU7 913 aa17.39■□□□□ 0.38
VPS33A-209ENST00000544349 TAF1LQ8IZX4 1826 aa17.39■□□□□ 0.37
VPS33A-209ENST00000544349 RPS6KA4O75676 772 aa17.39■□□□□ 0.37
VPS33A-209ENST00000544349 CTSWP56202 376 aa17.39■□□□□ 0.37
VPS33A-209ENST00000544349 CCDC85AQ96PX6 553 aaPredicted RBP17.39■□□□□ 0.37
VPS33A-209ENST00000544349 ESYT1Q9BSJ8 1104 aa17.39■□□□□ 0.37
VPS33A-209ENST00000544349 FBXO3Q9UK99 471 aa17.39■□□□□ 0.37
VPS33A-209ENST00000544349 ZNF652Q9Y2D9 606 aa17.39■□□□□ 0.37
VPS33A-209ENST00000544349 REC8O95072 547 aa17.38■□□□□ 0.37
VPS33A-209ENST00000544349 IFIT5Q13325 482 aaKnown RBP17.38■□□□□ 0.37
VPS33A-209ENST00000544349 FAM196AQ6ZSG2 479 aa17.38■□□□□ 0.37
VPS33A-209ENST00000544349 KRT27Q7Z3Y8 459 aa17.38■□□□□ 0.37
VPS33A-209ENST00000544349 UTP14AQ9BVJ6 771 aaKnown RBP17.38■□□□□ 0.37
VPS33A-209ENST00000544349 PUS3Q9BZE2 481 aaKnown RBP17.38■□□□□ 0.37
VPS33A-209ENST00000544349 GPR108Q9NPR9 543 aa17.38■□□□□ 0.37
VPS33A-209ENST00000544349 NIP7Q9Y221 180 aaKnown RBP eCLIP17.38■□□□□ 0.37
VPS33A-209ENST00000544349 SH3TC1Q8TE82 1336 aa17.38■□□□□ 0.37
VPS33A-209ENST00000544349 TNPO1Q92973 898 aaKnown RBP17.38■□□□□ 0.37
VPS33A-209ENST00000544349 AK7Q96M32 723 aa17.38■□□□□ 0.37
VPS33A-209ENST00000544349 DBNLQ9UJU6 430 aaKnown RBP17.38■□□□□ 0.37
VPS33A-209ENST00000544349 ZNF772Q68DY9 489 aaPredicted RBP17.37■□□□□ 0.37
VPS33A-209ENST00000544349 GZF1Q9H116 711 aaPredicted RBP17.37■□□□□ 0.37
VPS33A-209ENST00000544349 RGL2O15211 777 aa17.36■□□□□ 0.37
VPS33A-209ENST00000544349 GREM2Q9H772 168 aa17.36■□□□□ 0.37
VPS33A-209ENST00000544349 ITGA6P23229 1130 aa17.36■□□□□ 0.37
VPS33A-209ENST00000544349 RBM6P78332 1123 aaKnown RBP17.36■□□□□ 0.37
VPS33A-209ENST00000544349 RAB3GAP1Q15042 981 aa17.36■□□□□ 0.37
VPS33A-209ENST00000544349 TAF7LQ5H9L4 462 aa17.36■□□□□ 0.37
VPS33A-209ENST00000544349 FAM177BA6PVY3 158 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 GNPATO15228 680 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 NTSR2O95665 410 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 SMIM5Q71RC9 77 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 EVI5LQ96CN4 794 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 DBNDD2Q9BQY9 259 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 BOLA2Q9H3K6 86 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 CIZ1Q9ULV3 898 aaPredicted RBP17.35■□□□□ 0.37
VPS33A-209ENST00000544349 SCN7AQ01118 1682 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 ANKRD18BA2A2Z9 1011 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 TRAK2O60296 914 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 ATP5JP18859 108 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 NARFQ9UHQ1 456 aa17.35■□□□□ 0.37
VPS33A-209ENST00000544349 RTCBQ9Y3I0 505 aaKnown RBP17.35■□□□□ 0.37
VPS33A-209ENST00000544349 CEP126Q9P2H0 1117 aa17.34■□□□□ 0.37
VPS33A-209ENST00000544349 C4BP0C0L5 1744 aa17.34■□□□□ 0.37
VPS33A-209ENST00000544349 DDX60Q8IY21 1712 aaKnown RBP17.34■□□□□ 0.37
VPS33A-209ENST00000544349 HSP90AA1P07900 732 aaKnown RBP17.33■□□□□ 0.37
VPS33A-209ENST00000544349 HCLS1P14317 486 aaPredicted RBP17.33■□□□□ 0.37
VPS33A-209ENST00000544349 RABEP1Q15276 862 aa17.33■□□□□ 0.37
VPS33A-209ENST00000544349 BCL2L12Q9HB09 334 aa17.33■□□□□ 0.37
VPS33A-209ENST00000544349 ZNF609O15014 1411 aa17.33■□□□□ 0.36
VPS33A-209ENST00000544349 DDX11L8A8MPP1 907 aa17.33■□□□□ 0.36
VPS33A-209ENST00000544349 NEUROD6Q96NK8 337 aa17.33■□□□□ 0.36
VPS33A-209ENST00000544349 HSP90B1P14625 803 aaKnown RBP17.32■□□□□ 0.36
VPS33A-209ENST00000544349 TIMM10P62072 90 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 USPL1Q5W0Q7 1092 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 LRRC4BQ9NT99 713 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 RIPOR2Q9Y4F9 1068 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 LAMB2P55268 1798 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 SSFA2P28290 1259 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 LDHAL6AQ6ZMR3 332 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 IL25Q9H293 177 aa17.32■□□□□ 0.36
VPS33A-209ENST00000544349 A0A1B0GUL7 405 aa17.31■□□□□ 0.36
VPS33A-209ENST00000544349 SGSM2O43147 1006 aa17.31■□□□□ 0.36
VPS33A-209ENST00000544349 ZPR1O75312 459 aa17.31■□□□□ 0.36
VPS33A-209ENST00000544349 TRIM37O94972 964 aa17.31■□□□□ 0.36
VPS33A-209ENST00000544349 AMIGO3Q86WK7 504 aa17.31■□□□□ 0.36
VPS33A-209ENST00000544349 ARHGEF1Q92888 912 aaKnown RBP17.31■□□□□ 0.36
VPS33A-209ENST00000544349 SRP68Q9UHB9 627 aaKnown RBP17.31■□□□□ 0.36
VPS33A-209ENST00000544349 AKAP2Q9Y2D5 859 aa17.31■□□□□ 0.36
VPS33A-209ENST00000544349 FSD2A1L4K1 749 aa17.3■□□□□ 0.36
VPS33A-209ENST00000544349 TBC1D9BQ66K14 1250 aa17.3■□□□□ 0.36
VPS33A-209ENST00000544349 ANO2Q9NQ90 1003 aa17.3■□□□□ 0.36
VPS33A-209ENST00000544349 EPB41L2O43491 1005 aaKnown RBP17.3■□□□□ 0.36
VPS33A-209ENST00000544349 DIAPH3Q9NSV4 1193 aa17.3■□□□□ 0.36
VPS33A-209ENST00000544349 CWC27Q6UX04 472 aaKnown RBP17.29■□□□□ 0.36
VPS33A-209ENST00000544349 BICDL1Q6ZP65 573 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 CNNM1Q9NRU3 951 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 RIC1Q4ADV7 1423 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 HIP1O00291 1037 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 SLC27A3Q5K4L6 730 aa17.29■□□□□ 0.36
VPS33A-209ENST00000544349 TRAPPC3LQ5T215 181 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms