RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 CCDC85AQ96PX6 553 aaPredicted RBP18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 WWC3Q9ULE0 1092 aa18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 DDX19BQ9UMR2 479 aa18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 SF3B3Q15393 1217 aaKnown RBP18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 CCDC152Q4G0S7 254 aa18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 RBM17Q96I25 401 aaKnown RBP18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 CHMP3Q9Y3E7 222 aa18.18■□□□□ 0.5
TNFRSF1A-216ENST00000543995 KCNA3P22001 575 aa18.17■□□□□ 0.5
TNFRSF1A-216ENST00000543995 STYK1Q6J9G0 422 aa18.17■□□□□ 0.5
TNFRSF1A-216ENST00000543995 DDX46Q7L014 1031 aaKnown RBP18.17■□□□□ 0.5
TNFRSF1A-216ENST00000543995 PIM2Q9P1W9 311 aa18.17■□□□□ 0.5
TNFRSF1A-216ENST00000543995 ZBTB7BO15156 539 aaPredicted RBP18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 FOXO4P98177 505 aa18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 EPHA10Q5JZY3 1008 aa18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 TTLL11Q8NHH1 800 aa18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 CHMP4BQ9H444 224 aaKnown RBP18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 BICC1Q9H694 974 aaKnown RBP18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 LRRFIP2Q9Y608 721 aaKnown RBP18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 BRCA1P38398 1863 aaKnown RBP18.16■□□□□ 0.5
TNFRSF1A-216ENST00000543995 ALDH1B1P30837 517 aa18.15■□□□□ 0.5
TNFRSF1A-216ENST00000543995 LMBR1LQ6UX01 489 aa18.15■□□□□ 0.5
TNFRSF1A-216ENST00000543995 CNKSR1Q969H4 720 aa18.15■□□□□ 0.5
TNFRSF1A-216ENST00000543995 TAF1P21675 1872 aa18.15■□□□□ 0.5
TNFRSF1A-216ENST00000543995 GNAI2P04899 355 aa18.14■□□□□ 0.49
TNFRSF1A-216ENST00000543995 HOXA10P31260 410 aaPredicted RBP18.14■□□□□ 0.49
TNFRSF1A-216ENST00000543995 PELP1Q8IZL8 1130 aaKnown RBP18.14■□□□□ 0.49
TNFRSF1A-216ENST00000543995 TTLL6Q8N841 843 aa18.14■□□□□ 0.49
TNFRSF1A-216ENST00000543995 KAZALD1Q96I82 304 aa18.14■□□□□ 0.49
TNFRSF1A-216ENST00000543995 GREM2Q9H772 168 aa18.14■□□□□ 0.49
TNFRSF1A-216ENST00000543995 CSF1RP07333 972 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 DALRD3Q5D0E6 543 aaKnown RBP18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 CRAMP1Q96RY5 1269 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 BCS1LQ9Y276 419 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 SRCAPQ6ZRS2 3230 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 FAM161AQ3B820 660 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 C1orf115Q9H7X2 142 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 SEC31BQ9NQW1 1179 aa18.13■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ITGA6P23229 1130 aa18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 IFIT5Q13325 482 aaKnown RBP18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 GRAPQ13588 217 aa18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 CCDC57Q2TAC2 916 aa18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 RABL6Q3YEC7 729 aaPredicted RBP18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 PRPF40BQ6NWY9 871 aaKnown RBP18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ANKRD44Q8N8A2 993 aa18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 GRAPLQ8TC17 118 aaPredicted RBP18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 CRBNQ96SW2 442 aa18.12■□□□□ 0.49
TNFRSF1A-216ENST00000543995 SLX4Q8IY92 1834 aa18.11■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ANKRD18BA2A2Z9 1011 aa18.11■□□□□ 0.49
TNFRSF1A-216ENST00000543995 CDC5LQ99459 802 aaKnown RBP18.11■□□□□ 0.49
TNFRSF1A-216ENST00000543995 SPEF2Q9C093 1822 aa18.11■□□□□ 0.49
TNFRSF1A-216ENST00000543995 RTL9Q8NET4 1388 aa18.1■□□□□ 0.49
TNFRSF1A-216ENST00000543995 CELF1Q92879 486 aaKnown RBP18.1■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ZNF219Q9P2Y4 722 aaPredicted RBP18.1■□□□□ 0.49
TNFRSF1A-216ENST00000543995 PPEF1O14829 653 aaPredicted RBP18.09■□□□□ 0.49
TNFRSF1A-216ENST00000543995 BBOX1O75936 387 aa18.09■□□□□ 0.49
TNFRSF1A-216ENST00000543995 RPS8P62241 208 aaKnown RBP18.09■□□□□ 0.49
TNFRSF1A-216ENST00000543995 TAF7LQ5H9L4 462 aa18.09■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ANKRD18AQ8IVF6 992 aa18.09■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ZBTB40Q9NUA8 1239 aa18.09■□□□□ 0.49
TNFRSF1A-216ENST00000543995 IGHMBP2P38935 993 aaKnown RBP18.08■□□□□ 0.49
TNFRSF1A-216ENST00000543995 IRX6P78412 446 aaPredicted RBP18.08■□□□□ 0.49
TNFRSF1A-216ENST00000543995 GPR162Q16538 588 aa18.08■□□□□ 0.49
TNFRSF1A-216ENST00000543995 TMX4Q9H1E5 349 aaPredicted RBP18.08■□□□□ 0.49
TNFRSF1A-216ENST00000543995 ARFGEF1Q9Y6D6 1849 aa18.08■□□□□ 0.49
TNFRSF1A-216ENST00000543995 C21orf2O43822 256 aa18.08■□□□□ 0.48
TNFRSF1A-216ENST00000543995 COL4A1P02462 1669 aa18.07■□□□□ 0.48
TNFRSF1A-216ENST00000543995 SRGAP3O43295 1099 aa18.07■□□□□ 0.48
TNFRSF1A-216ENST00000543995 DCAF8L1A6NGE4 600 aa18.06■□□□□ 0.48
TNFRSF1A-216ENST00000543995 YBX3P16989 372 aaKnown RBP eCLIP18.06■□□□□ 0.48
TNFRSF1A-216ENST00000543995 ZNF594Q96JF6 807 aaPredicted RBP18.06■□□□□ 0.48
TNFRSF1A-216ENST00000543995 MPHOSPH8Q99549 860 aa18.06■□□□□ 0.48
TNFRSF1A-216ENST00000543995 TMC4Q7Z404 712 aa18.05■□□□□ 0.48
TNFRSF1A-216ENST00000543995 ATP6V0A2Q9Y487 856 aa18.05■□□□□ 0.48
TNFRSF1A-216ENST00000543995 MTX1Q13505 466 aa18.04■□□□□ 0.48
TNFRSF1A-216ENST00000543995 SOGA3Q5TF21 947 aa18.04■□□□□ 0.48
TNFRSF1A-216ENST00000543995 SP8Q8IXZ3 490 aa18.04■□□□□ 0.48
TNFRSF1A-216ENST00000543995 PNMA6EA0A0J9YXQ4 647 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 ATP8B2P98198 1209 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 CEP85Q6P2H3 762 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 OLFM4Q6UX06 510 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 LDHAL6AQ6ZMR3 332 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 EXOC6Q8TAG9 804 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 KLHDC4Q8TBB5 520 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 CNNM1Q9NRU3 951 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 BSDC1Q9NW68 430 aaPredicted RBP18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 CCDC93Q567U6 631 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 CC2D2BQ6DHV5 1058 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 C7orf43Q8WVR3 580 aa18.03■□□□□ 0.48
TNFRSF1A-216ENST00000543995 RFX5P48382 616 aaPredicted RBP18.02■□□□□ 0.47
TNFRSF1A-216ENST00000543995 ARHGAP27Q6ZUM4 889 aa18.02■□□□□ 0.47
TNFRSF1A-216ENST00000543995 SLC51AQ86UW1 340 aa18.02■□□□□ 0.47
TNFRSF1A-216ENST00000543995 RPAP2Q8IXW5 612 aaPredicted RBP18.02■□□□□ 0.47
TNFRSF1A-216ENST00000543995 LRRC37AA6NMS7 1700 aa18.01■□□□□ 0.47
TNFRSF1A-216ENST00000543995 GRIN3BO60391 1043 aa18.01■□□□□ 0.47
TNFRSF1A-216ENST00000543995 PTPN12Q05209 780 aaKnown RBP18.01■□□□□ 0.47
TNFRSF1A-216ENST00000543995 RTKN2Q8IZC4 609 aa18.01■□□□□ 0.47
TNFRSF1A-216ENST00000543995 SIL1Q9H173 461 aa18.01■□□□□ 0.47
TNFRSF1A-216ENST00000543995 PA2G4Q9UQ80 394 aaKnown RBP18.01■□□□□ 0.47
TNFRSF1A-216ENST00000543995 HMMRO75330 724 aa18■□□□□ 0.47
TNFRSF1A-216ENST00000543995 NEFLP07196 543 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms