RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ATP6V0A2	Q9Y487	856 aa		14.02	□□□□□ -0.17
DDB1-222	ENST00000543627	RIC1	Q4ADV7	1423 aa		14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	BEND3	Q5T5X7	828 aa		14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	CC2D2B	Q6DHV5	1058 aa		14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	DPY19L2	Q6NUT2	758 aa		14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	DPP8	Q6V1X1	898 aa	Predicted RBP	14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	MPND	Q8N594	471 aa		14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	NMRK2	Q9NPI5	230 aa		14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	NSFL1C	Q9UNZ2	370 aa	Known RBP	14.01	□□□□□ -0.17
DDB1-222	ENST00000543627	CCDC88A	Q3V6T2	1871 aa		14	□□□□□ -0.17
DDB1-222	ENST00000543627	KDM2B	Q8NHM5	1336 aa		14	□□□□□ -0.17
DDB1-222	ENST00000543627		H7C1W4	665 aa		14	□□□□□ -0.17
DDB1-222	ENST00000543627	IARS	P41252	1262 aa	Known RBP	14	□□□□□ -0.17
DDB1-222	ENST00000543627	RPS8	P62241	208 aa	Known RBP	14	□□□□□ -0.17
DDB1-222	ENST00000543627	SP8	Q8IXZ3	490 aa		14	□□□□□ -0.17
DDB1-222	ENST00000543627	C16orf71	Q8IYS4	520 aa	Predicted RBP	14	□□□□□ -0.17
DDB1-222	ENST00000543627	LARGE2	Q8N3Y3	721 aa		14	□□□□□ -0.17
DDB1-222	ENST00000543627	SRCIN1	Q9C0H9	1055 aa		14	□□□□□ -0.17
DDB1-222	ENST00000543627	NOB1	Q9ULX3	412 aa	Known RBP	14	□□□□□ -0.17
DDB1-222	ENST00000543627	C6orf229	H3BNL8	230 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	CTSW	P56202	376 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	ALDH1L2	Q3SY69	923 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	ANKRD18A	Q8IVF6	992 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	JDP2	Q8WYK2	163 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	SBF1	O95248	1867 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	TAF1	P21675	1872 aa		13.99	□□□□□ -0.17
DDB1-222	ENST00000543627	CDHR2	Q9BYE9	1310 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	LTBP3	Q9NS15	1303 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	RIMBP2	O15034	1052 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	PPIP5K2	O43314	1243 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	AOC3	Q16853	763 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	TTLL11	Q8NHH1	800 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	FRAT1	Q92837	279 aa	Predicted RBP	13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	GREM2	Q9H772	168 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	LAMB2	P55268	1798 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	DDX60	Q8IY21	1712 aa	Known RBP	13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	CACNA1F	O60840	1977 aa		13.98	□□□□□ -0.17
DDB1-222	ENST00000543627	PTPRC	P08575	1304 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	GLTPD2	A6NH11	291 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	DDN	O94850	711 aa	Predicted RBP	13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	CT47B1	P0C2W7	299 aa	Predicted RBP	13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	GRIPAP1	Q4V328	841 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	SUPT20H	Q8NEM7	779 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	CDC5L	Q99459	802 aa	Known RBP	13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	PSMD1	Q99460	953 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	ANKIB1	Q9P2G1	1089 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	GJA3	Q9Y6H8	435 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627	FER1L6	Q2WGJ9	1857 aa		13.97	□□□□□ -0.17
DDB1-222	ENST00000543627		G3V3G9	751 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	GRM8	O00222	908 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	ALDH1L1	O75891	902 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	RARS	P54136	660 aa	Known RBP	13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	GPSM2	P81274	684 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	DCAF8	Q5TAQ9	597 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	TMC4	Q7Z404	712 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	NIM1K	Q8IY84	436 aa		13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	GPR101	Q96P66	508 aa	Predicted RBP	13.96	□□□□□ -0.17
DDB1-222	ENST00000543627	BCAR3	O75815	825 aa		13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	ITGA6	P23229	1130 aa		13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	IGHMBP2	P38935	993 aa	Known RBP	13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	EIF6	P56537	245 aa	Known RBP	13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	FAM161A	Q3B820	660 aa		13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	TAF7L	Q5H9L4	462 aa		13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	MPHOSPH8	Q99549	860 aa		13.95	□□□□□ -0.18
DDB1-222	ENST00000543627	ANKRD18B	A2A2Z9	1011 aa		13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	KIF3C	O14782	793 aa		13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	CASP7	P55210	303 aa		13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	C1QTNF8	P60827	252 aa		13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	WASHC4	Q2M389	1173 aa		13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	LMBR1L	Q6UX01	489 aa		13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	YTHDC1	Q96MU7	727 aa	Known RBP	13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	API5	Q9BZZ5	524 aa	Known RBP	13.94	□□□□□ -0.18
DDB1-222	ENST00000543627	ZBED9	Q6R2W3	1325 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	ZNF541	Q9H0D2	1346 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	UFL1	O94874	794 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	DOK7	Q18PE1	504 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	EPHA10	Q5JZY3	1008 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	CLUAP1	Q96AJ1	413 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	SUCLG2	Q96I99	432 aa		13.93	□□□□□ -0.18
DDB1-222	ENST00000543627	PLIN1	O60240	522 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	VEGFA	P15692	232 aa	Predicted RBP	13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	FOXO4	P98177	505 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	IFIT5	Q13325	482 aa	Known RBP	13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	CCDC57	Q2TAC2	916 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	ZNF594	Q96JF6	807 aa	Predicted RBP	13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	EYA3	Q99504	573 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	PLA2G12B	Q9BX93	195 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	POLL	Q9UGP5	575 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	GGA1	Q9UJY5	639 aa		13.92	□□□□□ -0.18
DDB1-222	ENST00000543627	TIAM2	Q8IVF5	1701 aa		13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	IPO8	O15397	1037 aa	Known RBP	13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	RAD17	O75943	681 aa		13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	CSF1R	P07333	972 aa		13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	TBC1D16	Q8TBP0	767 aa		13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	DBNDD1	Q9H9R9	158 aa		13.91	□□□□□ -0.18
DDB1-222	ENST00000543627	COL4A1	P02462	1669 aa		13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms