RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 PPIP5K2O43314 1243 aa15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 ZEB1P37275 1124 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 CXCL9Q07325 125 aa15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 KIAA2012Q0VF49 1180 aa15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 NCBP3Q53F19 620 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 EAPPQ56P03 285 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 RTL5Q5HYW3 569 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 PNMA8AQ86V59 439 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 MPNDQ8N594 471 aa15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 TSR2Q969E8 191 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 GJA3Q9Y6H8 435 aa15.3■□□□□ 0.04
CLSTN3-211ENST00000541667 ZNF316A6NFI3 1004 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 IRS4O14654 1257 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 MAP1SQ66K74 1059 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 DPP8Q6V1X1 898 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 RIC3Q7Z5B4 369 aa15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 CNTROBQ8N137 903 aa15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 ZBTB38Q8NAP3 1195 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 ZNRF3Q9ULT6 936 aa15.29■□□□□ 0.04
CLSTN3-211ENST00000541667 DUOX1Q9NRD9 1551 aa15.28■□□□□ 0.04
CLSTN3-211ENST00000541667 YDJCA8MPS7 323 aa15.28■□□□□ 0.04
CLSTN3-211ENST00000541667 NIM1KQ8IY84 436 aa15.28■□□□□ 0.04
CLSTN3-211ENST00000541667 SUPT20HQ8NEM7 779 aa15.28■□□□□ 0.04
CLSTN3-211ENST00000541667 MYD88Q99836 296 aa15.28■□□□□ 0.04
CLSTN3-211ENST00000541667 METTL22Q9BUU2 404 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-211ENST00000541667 CCDC30Q5VVM6 783 aa15.27■□□□□ 0.04
CLSTN3-211ENST00000541667 TMC4Q7Z404 712 aa15.27■□□□□ 0.04
CLSTN3-211ENST00000541667 CCDC191Q8NCU4 936 aa15.27■□□□□ 0.04
CLSTN3-211ENST00000541667 JARID2Q92833 1246 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-211ENST00000541667 POLLQ9UGP5 575 aa15.27■□□□□ 0.04
CLSTN3-211ENST00000541667 CLEC11AQ9Y240 323 aa15.27■□□□□ 0.04
CLSTN3-211ENST00000541667 PCCAP05165 728 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 IGKV5-2P06315 115 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 RPS8P62241 208 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 GPSM2P81274 684 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 FMR1Q06787 632 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 GOLGA2Q08379 1002 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 COL13A1Q5TAT6 717 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 G2E3Q7L622 706 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 TMX4Q9H1E5 349 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 SEC31BQ9NQW1 1179 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 GPRC5DQ9NZD1 345 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 MKRN1Q9UHC7 482 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 LRRC37AA6NMS7 1700 aa15.26■□□□□ 0.03
CLSTN3-211ENST00000541667 IL16Q14005 1332 aa15.25■□□□□ 0.03
CLSTN3-211ENST00000541667 TMEM88BA6NKF7 163 aa15.25■□□□□ 0.03
CLSTN3-211ENST00000541667 KSR2Q6VAB6 950 aa15.25■□□□□ 0.03
CLSTN3-211ENST00000541667 USP50Q70EL3 339 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-211ENST00000541667 MRS2Q9HD23 443 aa15.25■□□□□ 0.03
CLSTN3-211ENST00000541667 MAP3K2Q9Y2U5 619 aa15.25■□□□□ 0.03
CLSTN3-211ENST00000541667 CNTNAP1P78357 1384 aa15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 PI4KAP2A4QPH2 592 aa15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 GMPSP49915 693 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 HIRAP54198 1017 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 PI4KAP1Q8N8J0 262 aa15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 CWC25Q9NXE8 425 aaPredicted RBP15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 PGAP2Q9UHJ9 254 aa15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 NSFL1CQ9UNZ2 370 aaKnown RBP15.24■□□□□ 0.03
CLSTN3-211ENST00000541667 RAD17O75943 681 aa15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 HSPA1AP0DMV8 641 aaKnown RBP15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 HSPA1BP0DMV9 641 aaKnown RBP15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 LMOD1P29536 600 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 TWISTNBQ3B726 338 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 CIAPIN1Q6FI81 312 aa15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 KCNQ5Q9NR82 932 aa15.23■□□□□ 0.03
CLSTN3-211ENST00000541667 SHTN1A0MZ66 631 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 PDE8AO60658 829 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 VAMP4O75379 141 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 VEGFBP49765 207 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 WASHC4Q2M389 1173 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 CST9Q5W186 159 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 TBC1D16Q8TBP0 767 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 GPR101Q96P66 508 aaPredicted RBP15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 CHMP4AQ9BY43 222 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 ADARB2Q9NS39 739 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 PODXL2Q9NZ53 605 aa15.22■□□□□ 0.03
CLSTN3-211ENST00000541667 RASSF10A6NK89 507 aa15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 TRAF5O00463 557 aa15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 RIMBP2O15034 1052 aa15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 ANP32CO43423 234 aa15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 DDX58O95786 925 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 SLC4A2P04920 1241 aa15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 WDR63Q8IWG1 891 aa15.21■□□□□ 0.03
CLSTN3-211ENST00000541667 CDHR2Q9BYE9 1310 aa15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 WTIPA6NIX2 430 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 H7C1W4 665 aa15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 TNIP1Q15025 636 aa15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 CWF19L2Q2TBE0 894 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 TTLL11Q8NHH1 800 aa15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 CCDC85AQ96PX6 553 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 DBNDD1Q9H9R9 158 aa15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 CNOT7Q9UIV1 285 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 ZBTB12Q9Y330 459 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-211ENST00000541667 FANCIQ9NVI1 1328 aa15.19■□□□□ 0.02
CLSTN3-211ENST00000541667 NEURL1BA8MQ27 555 aa15.19■□□□□ 0.02
CLSTN3-211ENST00000541667 C6orf229H3BNL8 230 aa15.19■□□□□ 0.02
CLSTN3-211ENST00000541667 PSMD14O00487 310 aa15.19■□□□□ 0.02
CLSTN3-211ENST00000541667 CASP7P55210 303 aa15.19■□□□□ 0.02
CLSTN3-211ENST00000541667 DOK7Q18PE1 504 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms