RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ZNF827Q17R98 1081 aa21.84■■□□□ 1.09
CLIP1-215ENST00000541108 BACH2Q9BYV9 841 aa21.84■■□□□ 1.09
CLIP1-215ENST00000541108 SIL1Q9H173 461 aa21.84■■□□□ 1.09
CLIP1-215ENST00000541108 LAMB2P55268 1798 aa21.83■■□□□ 1.09
CLIP1-215ENST00000541108 BAG6P46379 1132 aa21.83■■□□□ 1.09
CLIP1-215ENST00000541108 EN1Q05925 392 aaPredicted RBP21.83■■□□□ 1.09
CLIP1-215ENST00000541108 CCDC125Q86Z20 511 aa21.83■■□□□ 1.09
CLIP1-215ENST00000541108 STAP2Q9UGK3 403 aa21.83■■□□□ 1.09
CLIP1-215ENST00000541108 CARMIL3Q8ND23 1372 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 DDX60Q8IY21 1712 aaKnown RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 ANKRD18BA2A2Z9 1011 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 EYA2O00167 538 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 HCLS1P14317 486 aaPredicted RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 GTF2E1P29083 439 aaPredicted RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 IL15P40933 162 aaPredicted RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 PDE1AP54750 535 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 EZH2Q15910 746 aaKnown RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 NBPF5PQ86XG9 351 aaPredicted RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 NUTM1Q86Y26 1132 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 OTUD7AQ8TE49 926 aaPredicted RBP21.82■■□□□ 1.08
CLIP1-215ENST00000541108 RTL9Q8NET4 1388 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 MX1P20591 662 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 ITGA6P23229 1130 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 NFIXQ14938 502 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 GREM2Q9H772 168 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 TSHZ2Q9NRE2 1034 aa21.82■■□□□ 1.08
CLIP1-215ENST00000541108 C8orf34Q49A92 452 aa21.81■■□□□ 1.08
CLIP1-215ENST00000541108 ERFEQ4G0M1 354 aa21.81■■□□□ 1.08
CLIP1-215ENST00000541108 CCDC152Q4G0S7 254 aa21.81■■□□□ 1.08
CLIP1-215ENST00000541108 AOX1Q06278 1338 aa21.81■■□□□ 1.08
CLIP1-215ENST00000541108 TM4SF1P30408 202 aa21.8■■□□□ 1.08
CLIP1-215ENST00000541108 SF3B3Q15393 1217 aaKnown RBP21.8■■□□□ 1.08
CLIP1-215ENST00000541108 TTC22Q5TAA0 569 aa21.8■■□□□ 1.08
CLIP1-215ENST00000541108 ATG9AQ7Z3C6 839 aa21.8■■□□□ 1.08
CLIP1-215ENST00000541108 BCL11AQ9H165 835 aa21.8■■□□□ 1.08
CLIP1-215ENST00000541108 TAF7LQ5H9L4 462 aa21.79■■□□□ 1.08
CLIP1-215ENST00000541108 COL23A1Q86Y22 540 aaPredicted RBP21.79■■□□□ 1.08
CLIP1-215ENST00000541108 NLGN1Q8N2Q7 840 aa21.79■■□□□ 1.08
CLIP1-215ENST00000541108 ZNF594Q96JF6 807 aaPredicted RBP21.79■■□□□ 1.08
CLIP1-215ENST00000541108 CCDC85AQ96PX6 553 aaPredicted RBP21.79■■□□□ 1.08
CLIP1-215ENST00000541108 GPR108Q9NPR9 543 aa21.79■■□□□ 1.08
CLIP1-215ENST00000541108 IFIT2P09913 472 aaKnown RBP21.78■■□□□ 1.08
CLIP1-215ENST00000541108 TTC41PQ6P2S7 1318 aa21.78■■□□□ 1.08
CLIP1-215ENST00000541108 TFCP2Q12800 502 aa21.77■■□□□ 1.08
CLIP1-215ENST00000541108 SLC15A2Q16348 729 aa21.77■■□□□ 1.08
CLIP1-215ENST00000541108 EAF2Q96CJ1 260 aaPredicted RBP21.77■■□□□ 1.08
CLIP1-215ENST00000541108 NLRP3Q96P20 1036 aa21.77■■□□□ 1.08
CLIP1-215ENST00000541108 LRRC24Q50LG9 513 aa21.76■■□□□ 1.07
CLIP1-215ENST00000541108 LDHAL6AQ6ZMR3 332 aa21.76■■□□□ 1.07
CLIP1-215ENST00000541108 AACSQ86V21 672 aa21.76■■□□□ 1.07
CLIP1-215ENST00000541108 TUBGCP6Q96RT7 1819 aa21.76■■□□□ 1.07
CLIP1-215ENST00000541108 GSPT1P15170 499 aaKnown RBP21.75■■□□□ 1.07
CLIP1-215ENST00000541108 TNNI3KQ59H18 835 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 STK32BQ9NY57 414 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 RIPOR2Q9Y4F9 1068 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.75■■□□□ 1.07
CLIP1-215ENST00000541108 FPGT-TNNI3KV9GXZ4 949 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 PNPLA7Q6ZV29 1317 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 CNBD1Q8NA66 436 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 GPATCH3Q96I76 525 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 PUS3Q9BZE2 481 aaKnown RBP21.75■■□□□ 1.07
CLIP1-215ENST00000541108 CEP126Q9P2H0 1117 aa21.75■■□□□ 1.07
CLIP1-215ENST00000541108 NPHP1O15259 732 aa21.74■■□□□ 1.07
CLIP1-215ENST00000541108 RIC1Q4ADV7 1423 aa21.74■■□□□ 1.07
CLIP1-215ENST00000541108 ABCC12Q96J65 1359 aa21.74■■□□□ 1.07
CLIP1-215ENST00000541108 ERC2O15083 957 aa21.73■■□□□ 1.07
CLIP1-215ENST00000541108 SERPINB2P05120 415 aa21.73■■□□□ 1.07
CLIP1-215ENST00000541108 CDC5LQ99459 802 aaKnown RBP21.73■■□□□ 1.07
CLIP1-215ENST00000541108 ECHDC1Q9NTX5 307 aa21.73■■□□□ 1.07
CLIP1-215ENST00000541108 AKAP2Q9Y2D5 859 aa21.73■■□□□ 1.07
CLIP1-215ENST00000541108 QSER1Q2KHR3 1735 aa21.73■■□□□ 1.07
CLIP1-215ENST00000541108 MSH5O43196 834 aa21.72■■□□□ 1.07
CLIP1-215ENST00000541108 DEFB132Q7Z7B7 95 aa21.72■■□□□ 1.07
CLIP1-215ENST00000541108 CNNM1Q9NRU3 951 aa21.72■■□□□ 1.07
CLIP1-215ENST00000541108 GLRX3O76003 335 aaKnown RBP21.72■■□□□ 1.07
CLIP1-215ENST00000541108 PI4K2BQ8TCG2 481 aa21.72■■□□□ 1.07
CLIP1-215ENST00000541108 MPHOSPH8Q99549 860 aa21.72■■□□□ 1.07
CLIP1-215ENST00000541108 ANO8Q9HCE9 1232 aaPredicted RBP21.72■■□□□ 1.07
CLIP1-215ENST00000541108 POLRMTO00411 1230 aaKnown RBP21.71■■□□□ 1.07
CLIP1-215ENST00000541108 IGHMBP2P38935 993 aaKnown RBP21.71■■□□□ 1.07
CLIP1-215ENST00000541108 PRR5LQ6MZQ0 368 aa21.71■■□□□ 1.07
CLIP1-215ENST00000541108 CCDC8Q9H0W5 538 aaPredicted RBP21.71■■□□□ 1.07
CLIP1-215ENST00000541108 SEC31BQ9NQW1 1179 aa21.71■■□□□ 1.07
CLIP1-215ENST00000541108 LRP5O75197 1615 aa21.7■■□□□ 1.06
CLIP1-215ENST00000541108 MROH5Q6ZUA9 1318 aa21.7■■□□□ 1.06
CLIP1-215ENST00000541108 SDSP20132 328 aa21.7■■□□□ 1.06
CLIP1-215ENST00000541108 ST5P78524 1137 aa21.7■■□□□ 1.06
CLIP1-215ENST00000541108 DDR1Q08345 913 aa21.69■■□□□ 1.06
CLIP1-215ENST00000541108 C3orf67Q6ZVT6 689 aa21.69■■□□□ 1.06
CLIP1-215ENST00000541108 METTL24Q5JXM2 366 aa21.69■■□□□ 1.06
CLIP1-215ENST00000541108 TSHZ3Q63HK5 1081 aa21.69■■□□□ 1.06
CLIP1-215ENST00000541108 DBNLQ9UJU6 430 aaKnown RBP21.69■■□□□ 1.06
CLIP1-215ENST00000541108 CASZ1Q86V15 1759 aa21.69■■□□□ 1.06
CLIP1-215ENST00000541108 PDE8BO95263 885 aa21.68■■□□□ 1.06
CLIP1-215ENST00000541108 ANKRD18AQ8IVF6 992 aa21.68■■□□□ 1.06
CLIP1-215ENST00000541108 EIF5BO60841 1220 aaKnown RBP21.67■■□□□ 1.06
CLIP1-215ENST00000541108 CDC45O75419 566 aa21.67■■□□□ 1.06
CLIP1-215ENST00000541108 VGLL2Q8N8G2 317 aa21.67■■□□□ 1.06
CLIP1-215ENST00000541108 BSDC1Q9NW68 430 aaPredicted RBP21.67■■□□□ 1.06
CLIP1-215ENST00000541108 RBM19Q9Y4C8 960 aaKnown RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms