RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 NEK11Q8NG66 645 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 EVI5LQ96CN4 794 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 CTAGE5O15320 804 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 CLCN6P51797 869 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 SLFNL1Q499Z3 407 aa15.03■□□□□ -0
SFSWAP-209ENST00000540469 LTV1Q96GA3 475 aaPredicted RBP15.03■□□□□ -0
SFSWAP-209ENST00000540469 GPS2Q13227 327 aa15.02■□□□□ -0
SFSWAP-209ENST00000540469 FAM177A1Q8N128 213 aaPredicted RBP15.02■□□□□ -0
SFSWAP-209ENST00000540469 PPFIA3O75145 1194 aa15.02□□□□□ -0.01
SFSWAP-209ENST00000540469 CCZ1BP86790 482 aa15.02□□□□□ -0.01
SFSWAP-209ENST00000540469 CCZ1P86791 482 aaPredicted RBP15.02□□□□□ -0.01
SFSWAP-209ENST00000540469 IQCB1Q15051 598 aa15.02□□□□□ -0.01
SFSWAP-209ENST00000540469 NECTIN1Q15223 517 aa15.02□□□□□ -0.01
SFSWAP-209ENST00000540469 DNAI1Q9UI46 699 aa15.02□□□□□ -0.01
SFSWAP-209ENST00000540469 URI1O94763 535 aaPredicted RBP15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 SARM1Q6SZW1 724 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 TSPYL1Q9H0U9 437 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 ZNF446Q9NWS9 450 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 PA2G4Q9UQ80 394 aaKnown RBP15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 CREBRFQ8IUR6 639 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 BOLA2Q9H3K6 86 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 PIK3C2BO00750 1634 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 PNMA6AP0CW24 399 aaPredicted RBP15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 SF3A1Q15459 793 aaKnown RBP15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 FSIP1Q8NA03 581 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 CCDC8Q9H0W5 538 aaPredicted RBP15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 TAOK2Q9UL54 1235 aa15.01□□□□□ -0.01
SFSWAP-209ENST00000540469 PI4KAP2A4QPH2 592 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 GNAT3A8MTJ3 354 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 HIP1O00291 1037 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 RPS6KB1P23443 525 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 RBM43Q6ZSC3 357 aaKnown RBP15□□□□□ -0.01
SFSWAP-209ENST00000540469 PI4KAP1Q8N8J0 262 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 ANXA1P04083 346 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 CYP2C19P33261 490 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15□□□□□ -0.013e-8■■■■□ 22.2
SFSWAP-209ENST00000540469 ARHGEF10O15013 1369 aa15□□□□□ -0.01
SFSWAP-209ENST00000540469 FTOQ9C0B1 505 aaKnown RBP eCLIP15□□□□□ -0.01
SFSWAP-209ENST00000540469 TTC21BQ7Z4L5 1316 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 GUCY1B3Q02153 619 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 COL9A3Q14050 684 aaPredicted RBP14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 POLA2Q14181 598 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 LRRC2Q9BYS8 371 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 SIL1Q9H173 461 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 CPS1P31327 1500 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 PPP1R13BQ96KQ4 1090 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 IFNKQ9P0W0 207 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 MAP3K5Q99683 1374 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 CLTCQ00610 1675 aaKnown RBP14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 BIN1O00499 593 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 CAPN2P17655 700 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 LRRN4CLQ8ND94 238 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 DNAAF4Q8WXU2 420 aa14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 ZSCAN16Q9H4T2 348 aaPredicted RBP14.99□□□□□ -0.01
SFSWAP-209ENST00000540469 G3BP1Q13283 466 aaKnown RBP eCLIP14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 KRBA2Q6ZNG9 492 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 CCDC150Q8NCX0 1101 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 ALKQ9UM73 1620 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 FAM193AP78312 1265 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 TXLNBQ8N3L3 684 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 MAP4K1Q92918 833 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 CCDC34Q96HJ3 373 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 SIGLEC1Q9BZZ2 1709 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 MLH3Q9UHC1 1453 aa14.98□□□□□ -0.01
SFSWAP-209ENST00000540469 RAD51AP2Q09MP3 1159 aa14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 SEC31AO94979 1220 aaKnown RBP14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 IRX3P78415 501 aaPredicted RBP14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 ERC1Q8IUD2 1116 aa14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 FHOD1Q9Y613 1164 aa14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 A0A0D9SFI3 127 aa14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 RESTQ13127 1097 aa14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 XPO4Q9C0E2 1151 aaKnown RBP14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 TAF6LQ9Y6J9 622 aa14.97□□□□□ -0.01
SFSWAP-209ENST00000540469 H2AFXP16104 143 aaPredicted RBP14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 TOB2Q14106 344 aaPredicted RBP14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 ZNF396Q96N95 335 aaPredicted RBP14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 EYA1Q99502 592 aa14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 E4F1Q66K89 784 aaPredicted RBP14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 Q6ZUG5 572 aa14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 CARD6Q9BX69 1037 aa14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 ACEP12821 1306 aa14.96□□□□□ -0.01
SFSWAP-209ENST00000540469 DHX40Q8IX18 779 aaKnown RBP14.96□□□□□ -0.02
SFSWAP-209ENST00000540469 C10orf67Q8IYJ2 551 aa14.96□□□□□ -0.02
SFSWAP-209ENST00000540469 FAM160A1Q05DH4 1040 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 NEK1Q96PY6 1258 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 CHPF2Q9P2E5 772 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 PLA2G4AP47712 749 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 ISM2Q6H9L7 571 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 CCDC191Q8NCU4 936 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 GOLPH3LQ9H4A5 285 aa14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 CWC15Q9P013 229 aaKnown RBP14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 ZCCHC17Q9NP64 241 aaKnown RBP14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 CCDC9Q9Y3X0 531 aaKnown RBP14.95□□□□□ -0.02
SFSWAP-209ENST00000540469 CCP110O43303 1012 aa14.94□□□□□ -0.02
SFSWAP-209ENST00000540469 LMOD1P29536 600 aaPredicted RBP14.94□□□□□ -0.02
SFSWAP-209ENST00000540469 OAS2P29728 719 aaKnown RBP14.94□□□□□ -0.02
SFSWAP-209ENST00000540469 CCT2P78371 535 aaKnown RBP14.94□□□□□ -0.02
SFSWAP-209ENST00000540469 KRT32Q14532 448 aa14.94□□□□□ -0.02
SFSWAP-209ENST00000540469 USP28Q96RU2 1077 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms