RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PPP1R14CQ8TAE6 165 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 KIAA1524Q8TCG1 905 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 ZHX3Q9H4I2 956 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 STK38LQ9Y2H1 464 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 TLDC2A0PJX2 215 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 ARMC9Q7Z3E5 817 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 KLHDC4Q8TBB5 520 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 CCDC110Q8TBZ0 833 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 DDX12PQ92771 950 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 FAM212AQ96EL1 285 aa9.97□□□□□ -0.81
YBX3-208ENST00000540447 RAD21O60216 631 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 CALR3Q96L12 384 aaKnown RBP9.96□□□□□ -0.81
YBX3-208ENST00000540447 GEMIN8Q9NWZ8 242 aaKnown RBP9.96□□□□□ -0.81
YBX3-208ENST00000540447 TSPYL4Q9UJ04 414 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 KRT86O43790 486 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 AMPHP49418 695 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 CCDC77Q9BR77 488 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 SELENOOQ9BVL4 669 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 KCNK9Q9NPC2 374 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 IFNKQ9P0W0 207 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 MIA2Q96PC5 1412 aa9.96□□□□□ -0.81
YBX3-208ENST00000540447 TXNDC9O14530 226 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 N4BP3O15049 544 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 CCDC65Q8IXS2 484 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 IKBKGQ9Y6K9 419 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 IFI16Q16666 785 aaKnown RBP9.96□□□□□ -0.82
YBX3-208ENST00000540447 CCDC57Q2TAC2 916 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 PRPF40BQ6NWY9 871 aaKnown RBP9.96□□□□□ -0.82
YBX3-208ENST00000540447 CAPS2Q9BXY5 557 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 RASAL2Q9UJF2 1139 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 OPHN1O60890 802 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 PPFIA4O75335 1185 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 NLRP5P59047 1200 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 FAM71BQ8TC56 605 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 UBLCP1Q8WVY7 318 aaPredicted RBP9.96□□□□□ -0.82
YBX3-208ENST00000540447 CTAGE1Q96RT6 745 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 GUCA1BQ9UMX6 200 aa9.96□□□□□ -0.82
YBX3-208ENST00000540447 LRPPRCP42704 1394 aaKnown RBP9.96□□□□□ -0.82
YBX3-208ENST00000540447 DNAJC8O75937 253 aaPredicted RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 TWISTNBQ3B726 338 aaPredicted RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 USP6NLQ92738 828 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 KRT83P78385 493 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 NBPF6Q5VWK0 638 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 NBPF5PQ86XG9 351 aaPredicted RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 IQCA1Q86XH1 822 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 GSDMBQ8TAX9 411 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 NBPF4Q96M43 638 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 ATP8B1O43520 1251 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 AKR1B10O60218 316 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 GUCY1B3Q02153 619 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 VSIG1Q86XK7 387 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 RPAP2Q8IXW5 612 aaPredicted RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 LRRC45Q96CN5 670 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 RAB3IPQ96QF0 476 aaPredicted RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 MPHOSPH8Q99549 860 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 LARP6Q9BRS8 491 aaKnown RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 CLTAP09496 248 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 LRRC43Q8N309 656 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 PDCD7Q8N8D1 485 aaKnown RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 WASF1Q92558 559 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 MCUR1Q96AQ8 359 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 MYO1BO43795 1136 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 NAPGQ99747 312 aaPredicted RBP9.95□□□□□ -0.82
YBX3-208ENST00000540447 TRAK1Q9UPV9 953 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 CCDC144AA2RUR9 1427 aa9.95□□□□□ -0.82
YBX3-208ENST00000540447 ELP1O95163 1332 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 FGFR1OPO95684 399 aaKnown RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 LMOD1P29536 600 aaPredicted RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 DUSP27Q5VZP5 1158 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 C8orf76Q96K31 380 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 SATB2Q9UPW6 733 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 MTIF2P46199 727 aaKnown RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 ZNF75DP51815 510 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 EXOC4Q96A65 974 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 BAG1Q99933 345 aaPredicted RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 BMP2KQ9NSY1 1161 aaPredicted RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 PLEKHH2Q8IVE3 1493 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 RAB11FIP3O75154 756 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 TEFQ10587 303 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 YY1AP1Q9H869 796 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 MED4Q9NPJ6 270 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 TMCO4Q5TGY1 634 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 FBXO18Q8NFZ0 1043 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 RPGRIP1LQ68CZ1 1315 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 F13A1P00488 732 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 TPD52P55327 224 aaPredicted RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 IQCGQ9H095 443 aaKnown RBP9.94□□□□□ -0.82
YBX3-208ENST00000540447 ZC4H2Q9NQZ6 224 aa9.94□□□□□ -0.82
YBX3-208ENST00000540447 FERP16591 822 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 ATP2B2Q01814 1243 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 DNM1Q05193 864 aaKnown RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 KIF5AQ12840 1032 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 ATP2B3Q16720 1220 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 TADA2BQ86TJ2 420 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 PPANQ9NQ55 473 aaKnown RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 VPS41P49754 854 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 GKAP1Q5VSY0 366 aaPredicted RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 CCDC102BQ68D86 513 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 PHLDB3Q6NSJ2 640 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 ARHGAP24Q8N264 748 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms