RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ST5P78524 1137 aa12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 SMC1AQ14683 1233 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 TMED8Q6PL24 325 aaPredicted RBP12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 NOL8Q76FK4 1167 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 CCDC125Q86Z20 511 aa12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 MST1RQ04912 1400 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 FIBPO43427 364 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 PRKAR2BP31323 418 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 VPS72Q15906 364 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 MPRIPQ6WCQ1 1025 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 IFNL2Q8IZJ0 200 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 ATG3Q9NT62 314 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 KAT6BQ8WYB5 2073 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 GOLGA6L19H0YKK7 550 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 PPP1R12AO14974 1030 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 ERC2O15083 957 aa12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 EDC4Q6P2E9 1401 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 EIF3CLB5ME19 914 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 SNW1Q13573 536 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 EIF3CQ99613 913 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-207ENST00000537408 KIF3CO14782 793 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 GSCP56915 257 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 EFCAB13Q8IY85 973 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 NSD2O96028 1365 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 PRR36Q9H6K5 1346 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 SKILP12757 684 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 TICAM2Q86XR7 235 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 ACSBG1Q96GR2 724 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 CNPY2Q9Y2B0 182 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 PNPLA6Q8IY17 1366 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 TTC22Q5TAA0 569 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 SSH1Q8WYL5 1049 aa12.69□□□□□ -0.38
CLSTN3-207ENST00000537408 LIG1P18858 919 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 EXOSC9Q06265 439 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 SRRTQ9BXP5 876 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 NUP62CLQ9H1M0 184 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 POLR3AO14802 1390 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 ZNF142P52746 1687 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 GOLGA6L4A6NEF3 574 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 H0YHG0 523 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 APBB1O00213 710 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 SARNPP82979 210 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 PPP2R5AQ15172 486 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 LARP1Q6PKG0 1096 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 TRMT1Q9NXH9 659 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 SETBP1Q9Y6X0 1596 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 TRPM1Q7Z4N2 1603 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 AP5Z1O43299 807 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 CUL4AQ13619 759 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 NFATC2IPQ8NCF5 419 aa12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 TACO1Q9BSH4 297 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-207ENST00000537408 SBNO2Q9Y2G9 1366 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 FAM83GA6ND36 823 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 USHBP1Q8N6Y0 703 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 FLT4P35916 1363 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 CCP110O43303 1012 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 LAMC1P11047 1609 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 CDC25BP30305 580 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 GORABQ5T7V8 394 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 NYAP1Q6ZVC0 841 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 HOMER1Q86YM7 354 aa12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 CACTINQ8WUQ7 758 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-207ENST00000537408 TECPR2O15040 1411 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 FYB1O15117 783 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 TYRO3Q06418 890 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 ARFGAP3Q9NP61 516 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 EMILIN1Q9Y6C2 1016 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 NEURL4Q96JN8 1562 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 SMC2O95347 1197 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 TTLL5Q6EMB2 1281 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 LUZP1Q86V48 1076 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 MICALL1Q8N3F8 863 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 FUCA2Q9BTY2 467 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 SRCIN1Q9C0H9 1055 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 NRBP1Q9UHY1 535 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 EIF3JO75822 258 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 OS9Q13438 667 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 GNL2Q13823 731 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 SLC4A10Q6U841 1118 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 ERC1Q8IUD2 1116 aa12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-207ENST00000537408 TRIM37O94972 964 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 ZSCAN22P10073 491 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 DHX8Q14562 1220 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 TFCP2L1Q9NZI6 479 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 CORO7P57737 925 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 DNAJC21Q5F1R6 531 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 LRRC8AQ8IWT6 810 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 ADAM21Q9UKJ8 722 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 CAVIN2O95810 425 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 RDXP35241 583 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 FAM212AQ96EL1 285 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 CCDC34Q96HJ3 373 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 TNMDQ9H2S6 317 aa12.65□□□□□ -0.38
CLSTN3-207ENST00000537408 A0A087WUV0 522 aaPredicted RBP12.65□□□□□ -0.39
CLSTN3-207ENST00000537408 ZRANB2O95218 330 aaKnown RBP eCLIP12.65□□□□□ -0.39
CLSTN3-207ENST00000537408 RNF217Q8TC41 542 aa12.65□□□□□ -0.39
CLSTN3-207ENST00000537408 ORC3Q9UBD5 711 aaPredicted RBP12.65□□□□□ -0.39
CLSTN3-207ENST00000537408 WDR17Q8IZU2 1322 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms