RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ALDH1B1P30837 517 aa15.21■□□□□ 0.03
CHD4-203ENST00000535717 FOXO4P98177 505 aa15.21■□□□□ 0.03
CHD4-203ENST00000535717 EPHA10Q5JZY3 1008 aa15.21■□□□□ 0.03
CHD4-203ENST00000535717 PRPF40BQ6NWY9 871 aaKnown RBP15.21■□□□□ 0.03
CHD4-203ENST00000535717 FTSJ3Q8IY81 847 aaKnown RBP15.21■□□□□ 0.03
CHD4-203ENST00000535717 TTLL11Q8NHH1 800 aa15.21■□□□□ 0.03
CHD4-203ENST00000535717 SUCLG2Q96I99 432 aa15.21■□□□□ 0.03
CHD4-203ENST00000535717 CCDC85AQ96PX6 553 aaPredicted RBP15.21■□□□□ 0.03
CHD4-203ENST00000535717 SLX4Q8IY92 1834 aa15.21■□□□□ 0.03
CHD4-203ENST00000535717 CCDC152Q4G0S7 254 aa15.2■□□□□ 0.02
CHD4-203ENST00000535717 DDX46Q7L014 1031 aaKnown RBP15.2■□□□□ 0.02
CHD4-203ENST00000535717 PANK1Q8TE04 598 aa15.2■□□□□ 0.02
CHD4-203ENST00000535717 KAZALD1Q96I82 304 aa15.2■□□□□ 0.02
CHD4-203ENST00000535717 CACNA1SQ13698 1873 aa15.2■□□□□ 0.02
CHD4-203ENST00000535717 MYH3P11055 1940 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 CSF1RP07333 972 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 C7orf43Q8WVR3 580 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 MEIS3Q99687 375 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 SEC31BQ9NQW1 1179 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 ZNF219Q9P2Y4 722 aaPredicted RBP15.19■□□□□ 0.02
CHD4-203ENST00000535717 ARFGEF1Q9Y6D6 1849 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 COL4A1P02462 1669 aa15.19■□□□□ 0.02
CHD4-203ENST00000535717 TAF1P21675 1872 aa15.18■□□□□ 0.02
CHD4-203ENST00000535717 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
CHD4-203ENST00000535717 C21orf2O43822 256 aa15.18■□□□□ 0.02
CHD4-203ENST00000535717 MS4A1P11836 297 aa15.18■□□□□ 0.02
CHD4-203ENST00000535717 GRAPQ13588 217 aa15.18■□□□□ 0.02
CHD4-203ENST00000535717 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.18■□□□□ 0.02
CHD4-203ENST00000535717 GRAPLQ8TC17 118 aaPredicted RBP15.18■□□□□ 0.02
CHD4-203ENST00000535717 GREM2Q9H772 168 aa15.18■□□□□ 0.02
CHD4-203ENST00000535717 RTL9Q8NET4 1388 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 PPEF1O14829 653 aaPredicted RBP15.17■□□□□ 0.02
CHD4-203ENST00000535717 GRIN3BO60391 1043 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 BBOX1O75936 387 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 UBTFL1P0CB47 393 aaPredicted RBP15.17■□□□□ 0.02
CHD4-203ENST00000535717 C20orf194Q5TEA3 1177 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 LMBR1LQ6UX01 489 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 OLFM4Q6UX06 510 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 SLC51AQ86UW1 340 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 ITPRIPQ8IWB1 547 aa15.17■□□□□ 0.02
CHD4-203ENST00000535717 CELF1Q92879 486 aaKnown RBP15.17■□□□□ 0.02
CHD4-203ENST00000535717 BICC1Q9H694 974 aaKnown RBP15.17■□□□□ 0.02
CHD4-203ENST00000535717 FAM161AQ3B820 660 aa15.16■□□□□ 0.02
CHD4-203ENST00000535717 ANKRD44Q8N8A2 993 aa15.16■□□□□ 0.02
CHD4-203ENST00000535717 GNAI3P08754 354 aa15.15■□□□□ 0.02
CHD4-203ENST00000535717 ITGA6P23229 1130 aa15.15■□□□□ 0.02
CHD4-203ENST00000535717 RRP1P56182 461 aaKnown RBP15.15■□□□□ 0.02
CHD4-203ENST00000535717 RPS8P62241 208 aaKnown RBP15.15■□□□□ 0.02
CHD4-203ENST00000535717 PDE3AQ14432 1141 aa15.15■□□□□ 0.02
CHD4-203ENST00000535717 RABL6Q3YEC7 729 aaPredicted RBP15.15■□□□□ 0.02
CHD4-203ENST00000535717 ARHGAP27Q6ZUM4 889 aa15.15■□□□□ 0.02
CHD4-203ENST00000535717 CHMP3Q9Y3E7 222 aa15.15■□□□□ 0.02
CHD4-203ENST00000535717 LRRFIP2Q9Y608 721 aaKnown RBP15.15■□□□□ 0.02
CHD4-203ENST00000535717 ZBTB7BO15156 539 aaPredicted RBP15.14■□□□□ 0.01
CHD4-203ENST00000535717 COG6Q9Y2V7 657 aa15.14■□□□□ 0.01
CHD4-203ENST00000535717 ATP6V0A2Q9Y487 856 aa15.14■□□□□ 0.01
CHD4-203ENST00000535717 IFIT5Q13325 482 aaKnown RBP15.13■□□□□ 0.01
CHD4-203ENST00000535717 MVPQ14764 893 aaKnown RBP15.13■□□□□ 0.01
CHD4-203ENST00000535717 CCDC93Q567U6 631 aa15.13■□□□□ 0.01
CHD4-203ENST00000535717 SOGA3Q5TF21 947 aa15.13■□□□□ 0.01
CHD4-203ENST00000535717 TMC4Q7Z404 712 aa15.13■□□□□ 0.01
CHD4-203ENST00000535717 ANKRD18AQ8IVF6 992 aa15.13■□□□□ 0.01
CHD4-203ENST00000535717 SP8Q8IXZ3 490 aa15.13■□□□□ 0.01
CHD4-203ENST00000535717 CDC5LQ99459 802 aaKnown RBP15.13■□□□□ 0.01
CHD4-203ENST00000535717 HDAC5Q9UQL6 1122 aa15.13■□□□□ 0.01
CHD4-203ENST00000535717 SNED1Q8TER0 1413 aa15.12■□□□□ 0.01
CHD4-203ENST00000535717 ANKRD18BA2A2Z9 1011 aa15.12■□□□□ 0.01
CHD4-203ENST00000535717 NFKBIEO00221 500 aa15.12■□□□□ 0.01
CHD4-203ENST00000535717 CC2D2BQ6DHV5 1058 aa15.12■□□□□ 0.01
CHD4-203ENST00000535717 GNAI2P04899 355 aa15.11■□□□□ 0.01
CHD4-203ENST00000535717 RASSF7Q02833 373 aa15.11■□□□□ 0.01
CHD4-203ENST00000535717 CCDC57Q2TAC2 916 aa15.11■□□□□ 0.01
CHD4-203ENST00000535717 RTKN2Q8IZC4 609 aa15.11■□□□□ 0.01
CHD4-203ENST00000535717 FER1L6Q2WGJ9 1857 aa15.11■□□□□ 0.01
CHD4-203ENST00000535717 LRRC37AA6NMS7 1700 aa15.11■□□□□ 0.01
CHD4-203ENST00000535717 IGHMBP2P38935 993 aaKnown RBP15.1■□□□□ 0.01
CHD4-203ENST00000535717 ZNF594Q96JF6 807 aaPredicted RBP15.1■□□□□ 0.01
CHD4-203ENST00000535717 TMX4Q9H1E5 349 aaPredicted RBP15.1■□□□□ 0.01
CHD4-203ENST00000535717 BSDC1Q9NW68 430 aaPredicted RBP15.1■□□□□ 0.01
CHD4-203ENST00000535717 DDX19BQ9UMR2 479 aa15.1■□□□□ 0.01
CHD4-203ENST00000535717 SPEF2Q9C093 1822 aa15.1■□□□□ 0.01
CHD4-203ENST00000535717 PRELPP51888 382 aa15.09■□□□□ 0.01
CHD4-203ENST00000535717 FKBP4Q02790 459 aaKnown RBP eCLIP15.09■□□□□ 0.01
CHD4-203ENST00000535717 GRIPAP1Q4V328 841 aa15.09■□□□□ 0.01
CHD4-203ENST00000535717 TAOK3Q9H2K8 898 aa15.09■□□□□ 0.01
CHD4-203ENST00000535717 C1orf115Q9H7X2 142 aa15.09■□□□□ 0.01
CHD4-203ENST00000535717 SUPT16HQ9Y5B9 1047 aaKnown RBP15.09■□□□□ 0.01
CHD4-203ENST00000535717 LTBP3Q9NS15 1303 aa15.09■□□□□ 0.01
CHD4-203ENST00000535717 RFX5P48382 616 aaPredicted RBP15.08■□□□□ 0
CHD4-203ENST00000535717 GPSM2P81274 684 aa15.08■□□□□ 0
CHD4-203ENST00000535717 MTX1Q13505 466 aa15.08■□□□□ 0
CHD4-203ENST00000535717 TAF7LQ5H9L4 462 aa15.08■□□□□ 0
CHD4-203ENST00000535717 DPP8Q6V1X1 898 aaPredicted RBP15.08■□□□□ 0
CHD4-203ENST00000535717 MPNDQ8N594 471 aa15.08■□□□□ 0
CHD4-203ENST00000535717 PSMD1Q99460 953 aa15.08■□□□□ 0
CHD4-203ENST00000535717 MPHOSPH8Q99549 860 aa15.08■□□□□ 0
CHD4-203ENST00000535717 ZBTB40Q9NUA8 1239 aa15.08■□□□□ 0
CHD4-203ENST00000535717 MINPP1Q9UNW1 487 aa15.08■□□□□ 0
CHD4-203ENST00000535717 KLHDC4Q8TBB5 520 aa15.07■□□□□ 0
CHD4-203ENST00000535717 RTFDC1Q9BY42 306 aaPredicted RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms