RNA–Protein interactions for RNA: ENST00000535685.1

CCDC60-202, Transcript of coiled-coil domain containing 60, humanhuman

TSL 3

Gene CCDC60, Length 446 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-202ENST00000535685 ANKRD13DQ6ZTN6 518 aa14□□□□□ -0.17
CCDC60-202ENST00000535685 SMC1BQ8NDV3 1235 aa14□□□□□ -0.17
CCDC60-202ENST00000535685 L3MBTL3Q96JM7 780 aaPredicted RBP14□□□□□ -0.17
CCDC60-202ENST00000535685 ISCA1Q9BUE6 129 aa14□□□□□ -0.17
CCDC60-202ENST00000535685 DDX60Q8IY21 1712 aaKnown RBP13.98□□□□□ -0.17
CCDC60-202ENST00000535685 SH3TC1Q8TE82 1336 aa13.98□□□□□ -0.17
CCDC60-202ENST00000535685 OLFM4Q6UX06 510 aa13.98□□□□□ -0.17
CCDC60-202ENST00000535685 C3orf67Q6ZVT6 689 aa13.98□□□□□ -0.17
CCDC60-202ENST00000535685 SYNE4Q8N205 404 aa13.98□□□□□ -0.17
CCDC60-202ENST00000535685 VPS33BQ9H267 617 aa13.98□□□□□ -0.17
CCDC60-202ENST00000535685 IL16Q14005 1332 aa13.97□□□□□ -0.17
CCDC60-202ENST00000535685 FZD9O00144 591 aa13.97□□□□□ -0.17
CCDC60-202ENST00000535685 ANP32CO43423 234 aa13.97□□□□□ -0.17
CCDC60-202ENST00000535685 BBOX1O75936 387 aa13.97□□□□□ -0.17
CCDC60-202ENST00000535685 IARSP41252 1262 aaKnown RBP13.97□□□□□ -0.17
CCDC60-202ENST00000535685 DNAJC5GQ8N7S2 189 aa13.97□□□□□ -0.17
CCDC60-202ENST00000535685 ZNF277Q9NRM2 450 aaPredicted RBP13.97□□□□□ -0.17
CCDC60-202ENST00000535685 TRMT112Q9UI30 125 aaKnown RBP13.97□□□□□ -0.17
CCDC60-202ENST00000535685 TAF1P21675 1872 aa13.97□□□□□ -0.17
CCDC60-202ENST00000535685 PPEF1O14829 653 aaPredicted RBP13.96□□□□□ -0.17
CCDC60-202ENST00000535685 DDNO94850 711 aaPredicted RBP13.96□□□□□ -0.17
CCDC60-202ENST00000535685 WWC1Q8IX03 1113 aa13.96□□□□□ -0.17
CCDC60-202ENST00000535685 C8orf58Q8NAV2 365 aa13.96□□□□□ -0.17
CCDC60-202ENST00000535685 TSHZ2Q9NRE2 1034 aa13.96□□□□□ -0.17
CCDC60-202ENST00000535685 ATP6V0A2Q9Y487 856 aa13.96□□□□□ -0.17
CCDC60-202ENST00000535685 ABCC4O15439 1325 aa13.95□□□□□ -0.18
CCDC60-202ENST00000535685 IQCA1LA6NCM1 817 aa13.95□□□□□ -0.18
CCDC60-202ENST00000535685 CHRM1P11229 460 aaPredicted RBP13.95□□□□□ -0.18
CCDC60-202ENST00000535685 SF3B3Q15393 1217 aaKnown RBP13.95□□□□□ -0.18
CCDC60-202ENST00000535685 CCDC30Q5VVM6 783 aa13.95□□□□□ -0.18
CCDC60-202ENST00000535685 TMC4Q7Z404 712 aa13.95□□□□□ -0.18
CCDC60-202ENST00000535685 RTFDC1Q9BY42 306 aaPredicted RBP13.95□□□□□ -0.18
CCDC60-202ENST00000535685 MRS2Q9HD23 443 aa13.95□□□□□ -0.18
CCDC60-202ENST00000535685 LRRC37AA6NMS7 1700 aa13.94□□□□□ -0.18
CCDC60-202ENST00000535685 HCLS1P14317 486 aaPredicted RBP13.94□□□□□ -0.18
CCDC60-202ENST00000535685 SP8Q8IXZ3 490 aa13.94□□□□□ -0.18
CCDC60-202ENST00000535685 GOLGA2Q08379 1002 aa13.93□□□□□ -0.18
CCDC60-202ENST00000535685 GRAPQ13588 217 aa13.93□□□□□ -0.18
CCDC60-202ENST00000535685 DDX46Q7L014 1031 aaKnown RBP13.93□□□□□ -0.18
CCDC60-202ENST00000535685 GPC2Q8N158 579 aa13.93□□□□□ -0.18
CCDC60-202ENST00000535685 GRAPLQ8TC17 118 aaPredicted RBP13.93□□□□□ -0.18
CCDC60-202ENST00000535685 JDP2Q8WYK2 163 aa13.93□□□□□ -0.18
CCDC60-202ENST00000535685 TMX4Q9H1E5 349 aaPredicted RBP13.93□□□□□ -0.18
CCDC60-202ENST00000535685 COL4A5P29400 1685 aa13.93□□□□□ -0.18
CCDC60-202ENST00000535685 ZNF541Q9H0D2 1346 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 ADAMTSL1Q8N6G6 1762 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 ELL2O00472 640 aaPredicted RBP13.92□□□□□ -0.18
CCDC60-202ENST00000535685 HSP90B1P14625 803 aaKnown RBP13.92□□□□□ -0.18
CCDC60-202ENST00000535685 RIC3Q7Z5B4 369 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 WDR63Q8IWG1 891 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 TSPYL6Q8N831 410 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 CCDC191Q8NCU4 936 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 SUPT20HQ8NEM7 779 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 TAF1DQ9H5J8 278 aaPredicted RBP13.92□□□□□ -0.18
CCDC60-202ENST00000535685 PHAXQ9H814 394 aaKnown RBP13.92□□□□□ -0.18
CCDC60-202ENST00000535685 MYH3P11055 1940 aa13.92□□□□□ -0.18
CCDC60-202ENST00000535685 ATP5J2-PTCD1G3V325 749 aa13.91□□□□□ -0.18
CCDC60-202ENST00000535685 DDX58O95786 925 aaKnown RBP13.91□□□□□ -0.18
CCDC60-202ENST00000535685 CHADLQ6NUI6 762 aa13.91□□□□□ -0.18
CCDC60-202ENST00000535685 ZBTB38Q8NAP3 1195 aaPredicted RBP13.91□□□□□ -0.18
CCDC60-202ENST00000535685 FAM89AQ96GI7 184 aa13.91□□□□□ -0.18
CCDC60-202ENST00000535685 EIF6P56537 245 aaKnown RBP13.9□□□□□ -0.18
CCDC60-202ENST00000535685 LDHDQ86WU2 507 aa13.9□□□□□ -0.18
CCDC60-202ENST00000535685 LARGE2Q8N3Y3 721 aa13.9□□□□□ -0.18
CCDC60-202ENST00000535685 KLRG1Q96E93 195 aa13.9□□□□□ -0.18
CCDC60-202ENST00000535685 METTL22Q9BUU2 404 aaPredicted RBP13.9□□□□□ -0.18
CCDC60-202ENST00000535685 HACL1Q9UJ83 578 aa13.9□□□□□ -0.18
CCDC60-202ENST00000535685 STK25O00506 426 aa13.89□□□□□ -0.19
CCDC60-202ENST00000535685 IRS4O14654 1257 aaPredicted RBP13.89□□□□□ -0.19
CCDC60-202ENST00000535685 PCCAP05165 728 aaPredicted RBP13.89□□□□□ -0.19
CCDC60-202ENST00000535685 TWISTNBQ3B726 338 aaPredicted RBP13.89□□□□□ -0.19
CCDC60-202ENST00000535685 KSR2Q6VAB6 950 aa13.89□□□□□ -0.19
CCDC60-202ENST00000535685 MPNDQ8N594 471 aa13.89□□□□□ -0.19
CCDC60-202ENST00000535685 JMYQ8N9B5 988 aa13.89□□□□□ -0.19
CCDC60-202ENST00000535685 TSR2Q969E8 191 aaKnown RBP13.89□□□□□ -0.19
CCDC60-202ENST00000535685 LTBP1Q14766 1721 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 PPIP5K2O43314 1243 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 PYGBP11216 843 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 KIAA2012Q0VF49 1180 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 DPP8Q6V1X1 898 aaPredicted RBP13.88□□□□□ -0.19
CCDC60-202ENST00000535685 SLC51AQ86UW1 340 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 PNMA8AQ86V59 439 aaPredicted RBP13.88□□□□□ -0.19
CCDC60-202ENST00000535685 NIM1KQ8IY84 436 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 STK31Q9BXU1 1019 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 DUOX1Q9NRD9 1551 aa13.88□□□□□ -0.19
CCDC60-202ENST00000535685 TCERG1O14776 1098 aaKnown RBP13.87□□□□□ -0.19
CCDC60-202ENST00000535685 POTEIP0CG38 1075 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 POTEJP0CG39 1038 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 EPHX2P34913 555 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 MYD88Q99836 296 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 CWC25Q9NXE8 425 aaPredicted RBP13.87□□□□□ -0.19
CCDC60-202ENST00000535685 ZNRF3Q9ULT6 936 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 PASKQ96RG2 1323 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 CDHR2Q9BYE9 1310 aa13.87□□□□□ -0.19
CCDC60-202ENST00000535685 PI4KAP2A4QPH2 592 aa13.86□□□□□ -0.19
CCDC60-202ENST00000535685 PDE8AO60658 829 aa13.86□□□□□ -0.19
CCDC60-202ENST00000535685 RPS8P62241 208 aaKnown RBP13.86□□□□□ -0.19
CCDC60-202ENST00000535685 AOC3Q16853 763 aa13.86□□□□□ -0.19
CCDC60-202ENST00000535685 PI4KAP1Q8N8J0 262 aa13.86□□□□□ -0.19
CCDC60-202ENST00000535685 CELF1Q92879 486 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms