RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 PRR5LQ6MZQ0 368 aa17.66■□□□□ 0.42
TRIM3-212ENST00000533064 NLRP3Q96P20 1036 aa17.66■□□□□ 0.42
TRIM3-212ENST00000533064 TNRC6CQ9HCJ0 1690 aaKnown RBP17.65■□□□□ 0.42
TRIM3-212ENST00000533064 ABCC12Q96J65 1359 aa17.65■□□□□ 0.42
TRIM3-212ENST00000533064 CSF1RP07333 972 aa17.65■□□□□ 0.42
TRIM3-212ENST00000533064 CCDC152Q4G0S7 254 aa17.65■□□□□ 0.42
TRIM3-212ENST00000533064 TTLL11Q8NHH1 800 aa17.65■□□□□ 0.42
TRIM3-212ENST00000533064 PDGFDQ9GZP0 370 aaPredicted RBP17.65■□□□□ 0.42
TRIM3-212ENST00000533064 RIC1Q4ADV7 1423 aa17.65■□□□□ 0.42
TRIM3-212ENST00000533064 CACNA1SQ13698 1873 aa17.65■□□□□ 0.42
TRIM3-212ENST00000533064 DCTPP1Q9H773 170 aa17.64■□□□□ 0.42
TRIM3-212ENST00000533064 ZBTB47Q9UFB7 747 aaPredicted RBP17.64■□□□□ 0.42
TRIM3-212ENST00000533064 IFIT5Q13325 482 aaKnown RBP17.64■□□□□ 0.41
TRIM3-212ENST00000533064 HSP90AB4PQ58FF6 505 aa17.64■□□□□ 0.41
TRIM3-212ENST00000533064 TAF7LQ5H9L4 462 aa17.64■□□□□ 0.41
TRIM3-212ENST00000533064 CCDC85AQ96PX6 553 aaPredicted RBP17.64■□□□□ 0.41
TRIM3-212ENST00000533064 SURF6O75683 361 aaKnown RBP17.63■□□□□ 0.41
TRIM3-212ENST00000533064 FAM161AQ3B820 660 aa17.63■□□□□ 0.41
TRIM3-212ENST00000533064 SMC5Q8IY18 1101 aa17.63■□□□□ 0.41
TRIM3-212ENST00000533064 CCDC24Q8N4L8 307 aa17.63■□□□□ 0.41
TRIM3-212ENST00000533064 ANKRD18BA2A2Z9 1011 aa17.62■□□□□ 0.41
TRIM3-212ENST00000533064 ITGA6P23229 1130 aa17.62■□□□□ 0.41
TRIM3-212ENST00000533064 OS9Q13438 667 aaPredicted RBP17.62■□□□□ 0.41
TRIM3-212ENST00000533064 GREM2Q9H772 168 aa17.62■□□□□ 0.41
TRIM3-212ENST00000533064 PSDA5PKW4 1024 aaPredicted RBP17.61■□□□□ 0.41
TRIM3-212ENST00000533064 G3BP1Q13283 466 aaKnown RBP eCLIP17.61■□□□□ 0.41
TRIM3-212ENST00000533064 SF3B3Q15393 1217 aaKnown RBP17.61■□□□□ 0.41
TRIM3-212ENST00000533064 MTFR1LQ9H019 292 aa17.61■□□□□ 0.41
TRIM3-212ENST00000533064 EXOC6BQ9Y2D4 811 aa17.61■□□□□ 0.41
TRIM3-212ENST00000533064 RTL9Q8NET4 1388 aa17.61■□□□□ 0.41
TRIM3-212ENST00000533064 KIF13BQ9NQT8 1826 aa17.61■□□□□ 0.41
TRIM3-212ENST00000533064 COPRSQ9NQ92 184 aa17.61■□□□□ 0.41
TRIM3-212ENST00000533064 PA2G4Q9UQ80 394 aaKnown RBP17.61■□□□□ 0.41
TRIM3-212ENST00000533064 RAB11FIP3O75154 756 aa17.6■□□□□ 0.41
TRIM3-212ENST00000533064 ZBTB7AO95365 584 aa17.6■□□□□ 0.41
TRIM3-212ENST00000533064 POLD1P28340 1107 aa17.6■□□□□ 0.41
TRIM3-212ENST00000533064 RFX5P48382 616 aaPredicted RBP17.6■□□□□ 0.41
TRIM3-212ENST00000533064 PTPN12Q05209 780 aaKnown RBP17.6■□□□□ 0.41
TRIM3-212ENST00000533064 SIL1Q9H173 461 aa17.6■□□□□ 0.41
TRIM3-212ENST00000533064 NOP58Q9Y2X3 529 aaKnown RBP17.6■□□□□ 0.41
TRIM3-212ENST00000533064 APBB1O00213 710 aa17.59■□□□□ 0.41
TRIM3-212ENST00000533064 ANKRD45Q5TZF3 282 aa17.59■□□□□ 0.41
TRIM3-212ENST00000533064 ERC1Q8IUD2 1116 aa17.59■□□□□ 0.41
TRIM3-212ENST00000533064 CDC5LQ99459 802 aaKnown RBP17.59■□□□□ 0.41
TRIM3-212ENST00000533064 BRIP1Q9BX63 1249 aa17.59■□□□□ 0.41
TRIM3-212ENST00000533064 PDE6BP35913 854 aa17.58■□□□□ 0.41
TRIM3-212ENST00000533064 DDX46Q7L014 1031 aaKnown RBP17.58■□□□□ 0.41
TRIM3-212ENST00000533064 KLHDC4Q8TBB5 520 aa17.58■□□□□ 0.41
TRIM3-212ENST00000533064 RPGRQ92834 1020 aaKnown RBP17.58■□□□□ 0.41
TRIM3-212ENST00000533064 FBXO3Q9UK99 471 aa17.58■□□□□ 0.41
TRIM3-212ENST00000533064 COL11A2P13942 1736 aaPredicted RBP17.58■□□□□ 0.41
TRIM3-212ENST00000533064 A0A1B0GUL6 1792 aa17.58■□□□□ 0.4
TRIM3-212ENST00000533064 IGHMBP2P38935 993 aaKnown RBP17.58■□□□□ 0.4
TRIM3-212ENST00000533064 C3orf67Q6ZVT6 689 aa17.58■□□□□ 0.4
TRIM3-212ENST00000533064 ZNF594Q96JF6 807 aaPredicted RBP17.58■□□□□ 0.4
TRIM3-212ENST00000533064 LRRCC1Q9C099 1032 aa17.58■□□□□ 0.4
TRIM3-212ENST00000533064 TSHZ2Q9NRE2 1034 aa17.58■□□□□ 0.4
TRIM3-212ENST00000533064 ATF5Q9Y2D1 282 aaPredicted RBP17.58■□□□□ 0.4
TRIM3-212ENST00000533064 KIF1BPQ96EK5 621 aa17.57■□□□□ 0.4
TRIM3-212ENST00000533064 MPHOSPH8Q99549 860 aa17.57■□□□□ 0.4
TRIM3-212ENST00000533064 DLEC1Q9Y238 1755 aa17.57■□□□□ 0.4
TRIM3-212ENST00000533064 NUCB1Q02818 461 aa17.56■□□□□ 0.4
TRIM3-212ENST00000533064 LDHAL6AQ6ZMR3 332 aa17.56■□□□□ 0.4
TRIM3-212ENST00000533064 ANKRD18AQ8IVF6 992 aa17.56■□□□□ 0.4
TRIM3-212ENST00000533064 SEC31BQ9NQW1 1179 aa17.56■□□□□ 0.4
TRIM3-212ENST00000533064 PDZRN3Q9UPQ7 1066 aa17.56■□□□□ 0.4
TRIM3-212ENST00000533064 EYA2O00167 538 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 CIAO1O76071 339 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 IL15P40933 162 aaPredicted RBP17.55■□□□□ 0.4
TRIM3-212ENST00000533064 RBM17Q96I25 401 aaKnown RBP17.55■□□□□ 0.4
TRIM3-212ENST00000533064 CNNM1Q9NRU3 951 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 LRP5O75197 1615 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 CRY2Q49AN0 593 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 CHD1LQ86WJ1 897 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 RHPN1Q8TCX5 695 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 BCL11AQ9H165 835 aa17.55■□□□□ 0.4
TRIM3-212ENST00000533064 KLRG2A4D1S0 409 aaPredicted RBP17.54■□□□□ 0.4
TRIM3-212ENST00000533064 LNPKQ9C0E8 428 aa17.54■□□□□ 0.4
TRIM3-212ENST00000533064 AK9Q5TCS8 1911 aa17.53■□□□□ 0.4
TRIM3-212ENST00000533064 C10orf71Q711Q0 1435 aa17.52■□□□□ 0.4
TRIM3-212ENST00000533064 H0YIN7 160 aa17.52■□□□□ 0.4
TRIM3-212ENST00000533064 RPS8P62241 208 aaKnown RBP17.52■□□□□ 0.4
TRIM3-212ENST00000533064 GRAPQ13588 217 aa17.52■□□□□ 0.4
TRIM3-212ENST00000533064 LRRC24Q50LG9 513 aa17.52■□□□□ 0.4
TRIM3-212ENST00000533064 CLASRPQ8N2M8 674 aaKnown RBP17.52■□□□□ 0.4
TRIM3-212ENST00000533064 GRAPLQ8TC17 118 aaPredicted RBP17.52■□□□□ 0.4
TRIM3-212ENST00000533064 PUS3Q9BZE2 481 aaKnown RBP17.52■□□□□ 0.4
TRIM3-212ENST00000533064 SMARCA5O60264 1052 aaPredicted RBP17.52■□□□□ 0.39
TRIM3-212ENST00000533064 NPR1P16066 1061 aa17.52■□□□□ 0.39
TRIM3-212ENST00000533064 ATG9AQ7Z3C6 839 aa17.52■□□□□ 0.39
TRIM3-212ENST00000533064 IL1RAPL2Q9NP60 686 aa17.52■□□□□ 0.39
TRIM3-212ENST00000533064 CEP126Q9P2H0 1117 aa17.52■□□□□ 0.39
TRIM3-212ENST00000533064 SASH1O94885 1247 aa17.51■□□□□ 0.39
TRIM3-212ENST00000533064 SRGNP10124 158 aa17.51■□□□□ 0.39
TRIM3-212ENST00000533064 ALDH1B1P30837 517 aa17.51■□□□□ 0.39
TRIM3-212ENST00000533064 HOXA10P31260 410 aaPredicted RBP17.51■□□□□ 0.39
TRIM3-212ENST00000533064 METTL24Q5JXM2 366 aa17.51■□□□□ 0.39
TRIM3-212ENST00000533064 C2CD5Q86YS7 1000 aa17.51■□□□□ 0.39
TRIM3-212ENST00000533064 CELF1Q92879 486 aaKnown RBP17.51■□□□□ 0.39
TRIM3-212ENST00000533064 MASTLQ96GX5 879 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms