RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RTL5Q5HYW3 569 aaPredicted RBP19.05■□□□□ 0.64
VPS28-215ENST00000531924 COL13A1Q5TAT6 717 aaPredicted RBP19.05■□□□□ 0.64
VPS28-215ENST00000531924 RTFDC1Q9BY42 306 aaPredicted RBP19.05■□□□□ 0.64
VPS28-215ENST00000531924 ZNF853P0CG23 659 aa19.04■□□□□ 0.64
VPS28-215ENST00000531924 HSP90B1P14625 803 aaKnown RBP19.04■□□□□ 0.64
VPS28-215ENST00000531924 EPS15P42566 896 aa19.04■□□□□ 0.64
VPS28-215ENST00000531924 SCNN1DP51172 638 aa19.04■□□□□ 0.64
VPS28-215ENST00000531924 USP50Q70EL3 339 aaPredicted RBP19.04■□□□□ 0.64
VPS28-215ENST00000531924 CXCL9Q07325 125 aa19.03■□□□□ 0.64
VPS28-215ENST00000531924 TNIP1Q15025 636 aa19.03■□□□□ 0.64
VPS28-215ENST00000531924 BCL2L13Q9BXK5 485 aa19.03■□□□□ 0.64
VPS28-215ENST00000531924 ANKRD36CQ5JPF3 1778 aa19.03■□□□□ 0.64
VPS28-215ENST00000531924 CNTNAP1P78357 1384 aa19.03■□□□□ 0.64
VPS28-215ENST00000531924 COL4A5P29400 1685 aa19.02■□□□□ 0.64
VPS28-215ENST00000531924 IRS4O14654 1257 aaPredicted RBP19.02■□□□□ 0.64
VPS28-215ENST00000531924 DDX58O95786 925 aaKnown RBP19.02■□□□□ 0.64
VPS28-215ENST00000531924 KIAA2012Q0VF49 1180 aa19.02■□□□□ 0.64
VPS28-215ENST00000531924 TRIM28Q13263 835 aaKnown RBP19.02■□□□□ 0.64
VPS28-215ENST00000531924 CIAPIN1Q6FI81 312 aa19.02■□□□□ 0.64
VPS28-215ENST00000531924 TNS4Q8IZW8 715 aa19.02■□□□□ 0.64
VPS28-215ENST00000531924 ADARB2Q9NS39 739 aaKnown RBP19.02■□□□□ 0.64
VPS28-215ENST00000531924 ABT1Q9ULW3 272 aaKnown RBP19.02■□□□□ 0.64
VPS28-215ENST00000531924 NSFL1CQ9UNZ2 370 aaKnown RBP19.02■□□□□ 0.64
VPS28-215ENST00000531924 RAD17O75943 681 aa19.01■□□□□ 0.63
VPS28-215ENST00000531924 SF3B3Q15393 1217 aaKnown RBP19.01■□□□□ 0.63
VPS28-215ENST00000531924 CCDC30Q5VVM6 783 aa19.01■□□□□ 0.63
VPS28-215ENST00000531924 AIDAQ96BJ3 306 aa19.01■□□□□ 0.63
VPS28-215ENST00000531924 GPRC5DQ9NZD1 345 aa19.01■□□□□ 0.63
VPS28-215ENST00000531924 PCNTO95613 3336 aa19■□□□□ 0.63
VPS28-215ENST00000531924 C6orf229H3BNL8 230 aa19■□□□□ 0.63
VPS28-215ENST00000531924 GMPSP49915 693 aaPredicted RBP19■□□□□ 0.63
VPS28-215ENST00000531924 C8orf58Q8NAV2 365 aa19■□□□□ 0.63
VPS28-215ENST00000531924 MYD88Q99836 296 aa19■□□□□ 0.63
VPS28-215ENST00000531924 PHAXQ9H814 394 aaKnown RBP19■□□□□ 0.63
VPS28-215ENST00000531924 VEGFBP49765 207 aa18.99■□□□□ 0.63
VPS28-215ENST00000531924 WASHC4Q2M389 1173 aa18.99■□□□□ 0.63
VPS28-215ENST00000531924 DEFB115Q30KQ5 88 aa18.99■□□□□ 0.63
VPS28-215ENST00000531924 ZBTB38Q8NAP3 1195 aaPredicted RBP18.99■□□□□ 0.63
VPS28-215ENST00000531924 CELF1Q92879 486 aaKnown RBP18.99■□□□□ 0.63
VPS28-215ENST00000531924 ZEB1P37275 1124 aaPredicted RBP18.98■□□□□ 0.63
VPS28-215ENST00000531924 EYA3Q99504 573 aa18.98■□□□□ 0.63
VPS28-215ENST00000531924 STK31Q9BXU1 1019 aa18.98■□□□□ 0.63
VPS28-215ENST00000531924 CWC25Q9NXE8 425 aaPredicted RBP18.98■□□□□ 0.63
VPS28-215ENST00000531924 RIMBP2O15034 1052 aa18.97■□□□□ 0.63
VPS28-215ENST00000531924 RPS8P62241 208 aaKnown RBP18.97■□□□□ 0.63
VPS28-215ENST00000531924 PAXIP1Q6ZW49 1069 aaPredicted RBP18.97■□□□□ 0.63
VPS28-215ENST00000531924 CCDC191Q8NCU4 936 aa18.97■□□□□ 0.63
VPS28-215ENST00000531924 G3V3G9 751 aa18.96■□□□□ 0.63
VPS28-215ENST00000531924 H7C1D1 291 aa18.96■□□□□ 0.63
VPS28-215ENST00000531924 CCDC152Q4G0S7 254 aa18.96■□□□□ 0.63
VPS28-215ENST00000531924 DCAF8Q5TAQ9 597 aa18.96■□□□□ 0.63
VPS28-215ENST00000531924 CDHR2Q9BYE9 1310 aa18.96■□□□□ 0.63
VPS28-215ENST00000531924 RASSF10A6NK89 507 aa18.95■□□□□ 0.62
VPS28-215ENST00000531924 CAPN15O75808 1086 aa18.95■□□□□ 0.62
VPS28-215ENST00000531924 GPSM2P81274 684 aa18.95■□□□□ 0.62
VPS28-215ENST00000531924 METTL22Q9BUU2 404 aaPredicted RBP18.95■□□□□ 0.62
VPS28-215ENST00000531924 ANKIB1Q9P2G1 1089 aa18.95■□□□□ 0.62
VPS28-215ENST00000531924 LAMB2P55268 1798 aa18.95■□□□□ 0.62
VPS28-215ENST00000531924 ADAMTSL1Q8N6G6 1762 aa18.95■□□□□ 0.62
VPS28-215ENST00000531924 TRAF5O00463 557 aa18.94■□□□□ 0.62
VPS28-215ENST00000531924 PCCAP05165 728 aaPredicted RBP18.94■□□□□ 0.62
VPS28-215ENST00000531924 NEXNQ0ZGT2 675 aa18.94■□□□□ 0.62
VPS28-215ENST00000531924 TSR2Q969E8 191 aaKnown RBP18.94■□□□□ 0.62
VPS28-215ENST00000531924 ZC3H12CQ9C0D7 883 aaKnown RBP18.94■□□□□ 0.62
VPS28-215ENST00000531924 DBNDD1Q9H9R9 158 aa18.94■□□□□ 0.62
VPS28-215ENST00000531924 MRS2Q9HD23 443 aa18.94■□□□□ 0.62
VPS28-215ENST00000531924 CNOT7Q9UIV1 285 aaKnown RBP18.94■□□□□ 0.62
VPS28-215ENST00000531924 MAP3K2Q9Y2U5 619 aa18.94■□□□□ 0.62
VPS28-215ENST00000531924 ANP32CO43423 234 aa18.93■□□□□ 0.62
VPS28-215ENST00000531924 PDE8AO60658 829 aa18.93■□□□□ 0.62
VPS28-215ENST00000531924 GRM1Q13255 1194 aa18.93■□□□□ 0.62
VPS28-215ENST00000531924 TSPYL6Q8N831 410 aa18.93■□□□□ 0.62
VPS28-215ENST00000531924 CCDC85AQ96PX6 553 aaPredicted RBP18.93■□□□□ 0.62
VPS28-215ENST00000531924 POLLQ9UGP5 575 aa18.93■□□□□ 0.62
VPS28-215ENST00000531924 LTBP1Q14766 1721 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 YDJCA8MPS7 323 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 FOXN1O15353 648 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 ECE1P42892 770 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 CTCFP49711 727 aaPredicted RBP18.92■□□□□ 0.62
VPS28-215ENST00000531924 DOK7Q18PE1 504 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 CCDC27Q2M243 656 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 CCDC184Q52MB2 194 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 KSR2Q6VAB6 950 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 WWC1Q8IX03 1113 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 TBC1D16Q8TBP0 767 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 ZC3H15Q8WU90 426 aaKnown RBP18.92■□□□□ 0.62
VPS28-215ENST00000531924 JARID2Q92833 1246 aaPredicted RBP18.92■□□□□ 0.62
VPS28-215ENST00000531924 SEC31BQ9NQW1 1179 aa18.92■□□□□ 0.62
VPS28-215ENST00000531924 WDR33Q9C0J8 1336 aaKnown RBP18.92■□□□□ 0.62
VPS28-215ENST00000531924 ECE2O60344 883 aa18.91■□□□□ 0.62
VPS28-215ENST00000531924 UFL1O94874 794 aa18.91■□□□□ 0.62
VPS28-215ENST00000531924 MAP2K1Q02750 393 aaPredicted RBP18.91■□□□□ 0.62
VPS28-215ENST00000531924 FMR1Q06787 632 aaKnown RBP eCLIP18.91■□□□□ 0.62
VPS28-215ENST00000531924 TWISTNBQ3B726 338 aaPredicted RBP18.91■□□□□ 0.62
VPS28-215ENST00000531924 MICALL2Q8IY33 904 aa18.91■□□□□ 0.62
VPS28-215ENST00000531924 GGA1Q9UJY5 639 aa18.91■□□□□ 0.62
VPS28-215ENST00000531924 ZBTB12Q9Y330 459 aaPredicted RBP18.91■□□□□ 0.62
VPS28-215ENST00000531924 DDX60Q8IY21 1712 aaKnown RBP18.91■□□□□ 0.62
VPS28-215ENST00000531924 PI4KAP2A4QPH2 592 aa18.9■□□□□ 0.62
VPS28-215ENST00000531924 PSMD14O00487 310 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms