RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 BEND3Q5T5X7 828 aa18.39■□□□□ 0.53
FOXR1-202ENST00000531539 CELF1Q92879 486 aaKnown RBP18.39■□□□□ 0.53
FOXR1-202ENST00000531539 SEC31BQ9NQW1 1179 aa18.39■□□□□ 0.53
FOXR1-202ENST00000531539 CDHR2Q9BYE9 1310 aa18.39■□□□□ 0.53
FOXR1-202ENST00000531539 SBF1O95248 1867 aa18.38■□□□□ 0.53
FOXR1-202ENST00000531539 RPS8P62241 208 aaKnown RBP18.38■□□□□ 0.53
FOXR1-202ENST00000531539 ALDH1L2Q3SY69 923 aa18.38■□□□□ 0.53
FOXR1-202ENST00000531539 CCDC152Q4G0S7 254 aa18.38■□□□□ 0.53
FOXR1-202ENST00000531539 DPY19L2Q6NUT2 758 aa18.38■□□□□ 0.53
FOXR1-202ENST00000531539 PSMD1Q99460 953 aa18.38■□□□□ 0.53
FOXR1-202ENST00000531539 CACNA1FO60840 1977 aa18.37■□□□□ 0.53
FOXR1-202ENST00000531539 IARSP41252 1262 aaKnown RBP18.37■□□□□ 0.53
FOXR1-202ENST00000531539 MPNDQ8N594 471 aa18.37■□□□□ 0.53
FOXR1-202ENST00000531539 RRAGCQ9HB90 399 aa18.37■□□□□ 0.53
FOXR1-202ENST00000531539 NMRK2Q9NPI5 230 aa18.37■□□□□ 0.53
FOXR1-202ENST00000531539 SMC4Q9NTJ3 1288 aa18.37■□□□□ 0.53
FOXR1-202ENST00000531539 KDM2BQ8NHM5 1336 aa18.37■□□□□ 0.53
FOXR1-202ENST00000531539 GLTPD2A6NH11 291 aa18.36■□□□□ 0.53
FOXR1-202ENST00000531539 CT47B1P0C2W7 299 aaPredicted RBP18.36■□□□□ 0.53
FOXR1-202ENST00000531539 DPP8Q6V1X1 898 aaPredicted RBP18.36■□□□□ 0.53
FOXR1-202ENST00000531539 TMC4Q7Z404 712 aa18.36■□□□□ 0.53
FOXR1-202ENST00000531539 TTLL11Q8NHH1 800 aa18.36■□□□□ 0.53
FOXR1-202ENST00000531539 SRCIN1Q9C0H9 1055 aa18.36■□□□□ 0.53
FOXR1-202ENST00000531539 FER1L6Q2WGJ9 1857 aa18.35■□□□□ 0.53
FOXR1-202ENST00000531539 CTSWP56202 376 aa18.35■□□□□ 0.53
FOXR1-202ENST00000531539 C9orf78Q9NZ63 289 aaPredicted RBP18.35■□□□□ 0.53
FOXR1-202ENST00000531539 CCDC88AQ3V6T2 1871 aa18.35■□□□□ 0.53
FOXR1-202ENST00000531539 ZC3H4Q9UPT8 1303 aaKnown RBP18.34■□□□□ 0.53
FOXR1-202ENST00000531539 ALDH1L1O75891 902 aa18.34■□□□□ 0.53
FOXR1-202ENST00000531539 CASP7P55210 303 aa18.34■□□□□ 0.53
FOXR1-202ENST00000531539 LARGE2Q8N3Y3 721 aa18.34■□□□□ 0.53
FOXR1-202ENST00000531539 JDP2Q8WYK2 163 aa18.34■□□□□ 0.53
FOXR1-202ENST00000531539 NSFL1CQ9UNZ2 370 aaKnown RBP18.34■□□□□ 0.53
FOXR1-202ENST00000531539 LAMB2P55268 1798 aa18.33■□□□□ 0.53
FOXR1-202ENST00000531539 PTPRCP08575 1304 aa18.33■□□□□ 0.53
FOXR1-202ENST00000531539 DDX60Q8IY21 1712 aaKnown RBP18.33■□□□□ 0.52
FOXR1-202ENST00000531539 KIF3CO14782 793 aa18.33■□□□□ 0.52
FOXR1-202ENST00000531539 ANKRD18AQ8IVF6 992 aa18.33■□□□□ 0.52
FOXR1-202ENST00000531539 SUPT20HQ8NEM7 779 aa18.33■□□□□ 0.52
FOXR1-202ENST00000531539 NOB1Q9ULX3 412 aaKnown RBP18.33■□□□□ 0.52
FOXR1-202ENST00000531539 DDNO94850 711 aaPredicted RBP18.32■□□□□ 0.52
FOXR1-202ENST00000531539 RARSP54136 660 aaKnown RBP18.32■□□□□ 0.52
FOXR1-202ENST00000531539 C1QTNF8P60827 252 aa18.32■□□□□ 0.52
FOXR1-202ENST00000531539 GREM2Q9H772 168 aa18.32■□□□□ 0.52
FOXR1-202ENST00000531539 TAF1P21675 1872 aa18.32■□□□□ 0.52
FOXR1-202ENST00000531539 GRM8O00222 908 aa18.31■□□□□ 0.52
FOXR1-202ENST00000531539 PPIP5K2O43314 1243 aa18.31■□□□□ 0.52
FOXR1-202ENST00000531539 GPSM2P81274 684 aa18.31■□□□□ 0.52
FOXR1-202ENST00000531539 AOC3Q16853 763 aa18.31■□□□□ 0.52
FOXR1-202ENST00000531539 PLA2G12BQ9BX93 195 aa18.31■□□□□ 0.52
FOXR1-202ENST00000531539 RTFDC1Q9BY42 306 aaPredicted RBP18.31■□□□□ 0.52
FOXR1-202ENST00000531539 C6orf229H3BNL8 230 aa18.3■□□□□ 0.52
FOXR1-202ENST00000531539 CSF1RP07333 972 aa18.3■□□□□ 0.52
FOXR1-202ENST00000531539 C16orf71Q8IYS4 520 aaPredicted RBP18.3■□□□□ 0.52
FOXR1-202ENST00000531539 CDC5LQ99459 802 aaKnown RBP18.3■□□□□ 0.52
FOXR1-202ENST00000531539 VPS33BQ9H267 617 aa18.3■□□□□ 0.52
FOXR1-202ENST00000531539 SNED1Q8TER0 1413 aa18.3■□□□□ 0.52
FOXR1-202ENST00000531539 FZD9O00144 591 aa18.29■□□□□ 0.52
FOXR1-202ENST00000531539 VEGFAP15692 232 aaPredicted RBP18.29■□□□□ 0.52
FOXR1-202ENST00000531539 FOXO4P98177 505 aa18.29■□□□□ 0.52
FOXR1-202ENST00000531539 NIM1KQ8IY84 436 aa18.29■□□□□ 0.52
FOXR1-202ENST00000531539 ANKIB1Q9P2G1 1089 aa18.29■□□□□ 0.52
FOXR1-202ENST00000531539 CHMP3Q9Y3E7 222 aa18.29■□□□□ 0.52
FOXR1-202ENST00000531539 RIMBP2O15034 1052 aa18.28■□□□□ 0.52
FOXR1-202ENST00000531539 ITGA6P23229 1130 aa18.28■□□□□ 0.52
FOXR1-202ENST00000531539 EIF6P56537 245 aaKnown RBP18.28■□□□□ 0.52
FOXR1-202ENST00000531539 EPHA10Q5JZY3 1008 aa18.28■□□□□ 0.52
FOXR1-202ENST00000531539 LMBR1LQ6UX01 489 aa18.28■□□□□ 0.52
FOXR1-202ENST00000531539 POLLQ9UGP5 575 aa18.28■□□□□ 0.52
FOXR1-202ENST00000531539 ZNF541Q9H0D2 1346 aa18.27■□□□□ 0.52
FOXR1-202ENST00000531539 POTECB2RU33 542 aa18.27■□□□□ 0.52
FOXR1-202ENST00000531539 BCAR3O75815 825 aa18.27■□□□□ 0.52
FOXR1-202ENST00000531539 NBPF7P0C2Y1 421 aaPredicted RBP18.27■□□□□ 0.52
FOXR1-202ENST00000531539 IGHMBP2P38935 993 aaKnown RBP18.27■□□□□ 0.52
FOXR1-202ENST00000531539 BRPF1P55201 1214 aaPredicted RBP18.27■□□□□ 0.52
FOXR1-202ENST00000531539 WASHC4Q2M389 1173 aa18.27■□□□□ 0.52
FOXR1-202ENST00000531539 API5Q9BZZ5 524 aaKnown RBP18.27■□□□□ 0.52
FOXR1-202ENST00000531539 BSDC1Q9NW68 430 aaPredicted RBP18.27■□□□□ 0.52
FOXR1-202ENST00000531539 GJA3Q9Y6H8 435 aa18.27■□□□□ 0.52
FOXR1-202ENST00000531539 ZBED9Q6R2W3 1325 aa18.26■□□□□ 0.51
FOXR1-202ENST00000531539 ANKRD18BA2A2Z9 1011 aa18.26■□□□□ 0.51
FOXR1-202ENST00000531539 TOMM70O94826 608 aa18.26■□□□□ 0.51
FOXR1-202ENST00000531539 KIAA2012Q0VF49 1180 aa18.26■□□□□ 0.51
FOXR1-202ENST00000531539 FAM161AQ3B820 660 aa18.26■□□□□ 0.51
FOXR1-202ENST00000531539 TBC1D16Q8TBP0 767 aa18.26■□□□□ 0.51
FOXR1-202ENST00000531539 DICER1Q9UPY3 1922 aaKnown RBP18.25■□□□□ 0.51
FOXR1-202ENST00000531539 IFIT5Q13325 482 aaKnown RBP18.25■□□□□ 0.51
FOXR1-202ENST00000531539 FRAT1Q92837 279 aaPredicted RBP18.25■□□□□ 0.51
FOXR1-202ENST00000531539 SUCLG2Q96I99 432 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 GPR101Q96P66 508 aaPredicted RBP18.25■□□□□ 0.51
FOXR1-202ENST00000531539 EYA3Q99504 573 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 MPHOSPH8Q99549 860 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 GGA1Q9UJY5 639 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 ZNRF3Q9ULT6 936 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 MINPP1Q9UNW1 487 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 COL4A1P02462 1669 aa18.25■□□□□ 0.51
FOXR1-202ENST00000531539 IPO8O15397 1037 aaKnown RBP18.24■□□□□ 0.51
FOXR1-202ENST00000531539 UFL1O94874 794 aa18.24■□□□□ 0.51
FOXR1-202ENST00000531539 ZC3H12CQ9C0D7 883 aaKnown RBP18.24■□□□□ 0.51
FOXR1-202ENST00000531539 USP44Q9H0E7 712 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms