RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 RAB44Q7Z6P3 723 aaPredicted RBP6.86□□□□□ -1.31
CD44-233ENST00000531141 NLRP13Q86W25 1043 aa6.86□□□□□ -1.31
CD44-233ENST00000531141 BHMTQ93088 406 aa6.86□□□□□ -1.31
CD44-233ENST00000531141 FAM129BQ96TA1 746 aa6.86□□□□□ -1.31
CD44-233ENST00000531141 RARAP10276 462 aa6.85□□□□□ -1.31
CD44-233ENST00000531141 MARSP56192 900 aaKnown RBP6.85□□□□□ -1.31
CD44-233ENST00000531141 ZNF438Q7Z4V0 828 aa6.85□□□□□ -1.31
CD44-233ENST00000531141 SYT9Q86SS6 491 aa6.85□□□□□ -1.31
CD44-233ENST00000531141 ZSCAN1Q8NBB4 408 aa6.85□□□□□ -1.31
CD44-233ENST00000531141 HOXD8P13378 290 aaPredicted RBP6.84□□□□□ -1.31
CD44-233ENST00000531141 LORP23490 312 aaPredicted RBP6.84□□□□□ -1.31
CD44-233ENST00000531141 TRIM26Q12899 539 aaPredicted RBP6.84□□□□□ -1.31
CD44-233ENST00000531141 CCDC27Q2M243 656 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 C8orf34Q49A92 452 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 TMCO4Q5TGY1 634 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 XKR5Q6UX68 686 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 KRT25Q7Z3Z0 450 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 SNX29Q8TEQ0 813 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 TNFRSF25Q93038 417 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 DMRTB1Q96MA1 342 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 LRRC4BQ9NT99 713 aa6.84□□□□□ -1.31
CD44-233ENST00000531141 SASH3O75995 380 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 SOX18P35713 384 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 PCBP4P57723 403 aaKnown RBP6.83□□□□□ -1.32
CD44-233ENST00000531141 ZSCAN29Q8IWY8 852 aaPredicted RBP6.83□□□□□ -1.32
CD44-233ENST00000531141 ACDQ96AP0 544 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 ASB16Q96NS5 453 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 GGNBP2Q9H3C7 697 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 ELP3Q9H9T3 547 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 ABI2Q9NYB9 513 aaPredicted RBP6.83□□□□□ -1.32
CD44-233ENST00000531141 ZFATQ9P243 1243 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 GGA1Q9UJY5 639 aa6.83□□□□□ -1.32
CD44-233ENST00000531141 A6NHS1 94 aa6.82□□□□□ -1.32
CD44-233ENST00000531141 NEURL1BA8MQ27 555 aa6.82□□□□□ -1.32
CD44-233ENST00000531141 ADARB2-AS1A8MUL3 147 aa6.82□□□□□ -1.32
CD44-233ENST00000531141 GPR182O15218 404 aa6.82□□□□□ -1.32
CD44-233ENST00000531141 PSAPP07602 524 aa6.82□□□□□ -1.32
CD44-233ENST00000531141 FCHSD1Q86WN1 690 aa6.82□□□□□ -1.32
CD44-233ENST00000531141 ALKBH8Q96BT7 664 aaKnown RBP6.82□□□□□ -1.32
CD44-233ENST00000531141 MMP20O60882 483 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 IGHA2P01877 340 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 TARSP26639 723 aaKnown RBP6.81□□□□□ -1.32
CD44-233ENST00000531141 ADH7P40394 386 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 NRLP54845 237 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 GPLD1P80108 840 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 PLAURQ03405 335 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 PCSK7Q16549 785 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 TTC39BQ5VTQ0 682 aaPredicted RBP6.81□□□□□ -1.32
CD44-233ENST00000531141 DHX32Q7L7V1 743 aaKnown RBP6.81□□□□□ -1.32
CD44-233ENST00000531141 TMC7Q7Z402 723 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 OR13H1Q8NG92 308 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 TMC1Q8TDI8 760 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 MDFIQ99750 246 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 UBE2OQ9C0C9 1292 aaKnown RBP6.81□□□□□ -1.32
CD44-233ENST00000531141 TLR7Q9NYK1 1049 aaKnown RBP6.81□□□□□ -1.32
CD44-233ENST00000531141 TMEM63CQ9P1W3 806 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 KLF15Q9UIH9 416 aa6.81□□□□□ -1.32
CD44-233ENST00000531141 ELOA3CA0A087WX78 387 aaPredicted RBP6.8□□□□□ -1.32
CD44-233ENST00000531141 ELOA3DA6NLF2 546 aaPredicted RBP6.8□□□□□ -1.32
CD44-233ENST00000531141 OIP5O43482 229 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 TNFRSF21O75509 655 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 NEFLP07196 543 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 BCRP11274 1271 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 EPXP11678 715 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 MAP3K10Q02779 954 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 ELOA3BQ3SY89 546 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 ELOA3Q8NG57 546 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 TRPM4Q8TD43 1214 aa6.8□□□□□ -1.32
CD44-233ENST00000531141 DNAJB12Q9NXW2 375 aaKnown RBP6.8□□□□□ -1.32
CD44-233ENST00000531141 PHF20L1A8MW92 1017 aa6.79□□□□□ -1.32
CD44-233ENST00000531141 TREHO43280 583 aa6.79□□□□□ -1.32
CD44-233ENST00000531141 PHACTR2O75167 634 aa6.79□□□□□ -1.32
CD44-233ENST00000531141 CELA2BP08218 269 aaPredicted RBP6.79□□□□□ -1.32
CD44-233ENST00000531141 TBC1D8BQ0IIM8 1120 aa6.79□□□□□ -1.32
CD44-233ENST00000531141 SUZ12Q15022 739 aaKnown RBP6.79□□□□□ -1.32
CD44-233ENST00000531141 SVOPQ8N4V2 548 aa6.79□□□□□ -1.32
CD44-233ENST00000531141 SLC6A14Q9UN76 642 aa6.79□□□□□ -1.32
CD44-233ENST00000531141 ERCC3P19447 782 aa6.78□□□□□ -1.32
CD44-233ENST00000531141 ZNF385CQ66K41 422 aaPredicted RBP6.78□□□□□ -1.32
CD44-233ENST00000531141 KANK3Q6NY19 840 aa6.78□□□□□ -1.32
CD44-233ENST00000531141 LYPD4Q6UWN0 246 aa6.78□□□□□ -1.32
CD44-233ENST00000531141 EDARADDQ8WWZ3 215 aa6.78□□□□□ -1.32
CD44-233ENST00000531141 FOXD3Q9UJU5 478 aaPredicted RBP6.78□□□□□ -1.32
CD44-233ENST00000531141 ALAS2P22557 587 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 FMR1Q06787 632 aaKnown RBP eCLIP6.77□□□□□ -1.33
CD44-233ENST00000531141 DSC3Q14574 896 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 DNAJC14Q6Y2X3 702 aaPredicted RBP6.77□□□□□ -1.33
CD44-233ENST00000531141 WHAMMQ8TF30 809 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 PMEPA1Q969W9 287 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 NSUN5Q96P11 429 aaKnown RBP6.77□□□□□ -1.33
CD44-233ENST00000531141 DNAJC25Q9H1X3 360 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 CHRDQ9H2X0 955 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 AMOTL2Q9Y2J4 779 aa6.77□□□□□ -1.33
CD44-233ENST00000531141 KIF4AO95239 1232 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 CES1P23141 567 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 MFAP1P55081 439 aaKnown RBP6.76□□□□□ -1.33
CD44-233ENST00000531141 HYAL2Q12891 473 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 COL19A1Q14993 1142 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 C1orf229Q6ZS94 237 aaPredicted RBP6.76□□□□□ -1.33
CD44-233ENST00000531141 GALNT6Q8NCL4 622 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms