RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 RTFDC1Q9BY42 306 aaPredicted RBP13.72□□□□□ -0.21
CD44-227ENST00000528086 SEC31BQ9NQW1 1179 aa13.72□□□□□ -0.21
CD44-227ENST00000528086 NEURL1BA8MQ27 555 aa13.71□□□□□ -0.21
CD44-227ENST00000528086 CCER2I3L3R5 266 aa13.71□□□□□ -0.21
CD44-227ENST00000528086 POTEIP0CG38 1075 aa13.71□□□□□ -0.21
CD44-227ENST00000528086 POTEJP0CG39 1038 aa13.71□□□□□ -0.21
CD44-227ENST00000528086 CC2D2BQ6DHV5 1058 aa13.71□□□□□ -0.21
CD44-227ENST00000528086 SP8Q8IXZ3 490 aa13.71□□□□□ -0.21
CD44-227ENST00000528086 TRMT2AQ8IZ69 625 aaKnown RBP13.71□□□□□ -0.21
CD44-227ENST00000528086 CWC25Q9NXE8 425 aaPredicted RBP13.71□□□□□ -0.21
CD44-227ENST00000528086 ADAMTSL1Q8N6G6 1762 aa13.71□□□□□ -0.22
CD44-227ENST00000528086 SCN4AP35499 1836 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 F6X3S4 739 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 H7C1W4 665 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 BBOX1O75936 387 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 HSPA6P17066 643 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 SLFN5Q08AF3 891 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 RBM46Q8TBY0 533 aaKnown RBP13.7□□□□□ -0.22
CD44-227ENST00000528086 L3MBTL3Q96JM7 780 aaPredicted RBP13.7□□□□□ -0.22
CD44-227ENST00000528086 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
CD44-227ENST00000528086 SPEF2Q9C093 1822 aa13.69□□□□□ -0.22
CD44-227ENST00000528086 VEGFAP15692 232 aaPredicted RBP13.69□□□□□ -0.22
CD44-227ENST00000528086 DDX46Q7L014 1031 aaKnown RBP13.69□□□□□ -0.22
CD44-227ENST00000528086 MIER1Q8N108 512 aa13.69□□□□□ -0.22
CD44-227ENST00000528086 SCN9AQ15858 1988 aa13.69□□□□□ -0.22
CD44-227ENST00000528086 CDHR2Q9BYE9 1310 aa13.68□□□□□ -0.22
CD44-227ENST00000528086 WTIPA6NIX2 430 aaPredicted RBP13.68□□□□□ -0.22
CD44-227ENST00000528086 DDX58O95786 925 aaKnown RBP13.68□□□□□ -0.22
CD44-227ENST00000528086 CCDC85AQ96PX6 553 aaPredicted RBP13.68□□□□□ -0.22
CD44-227ENST00000528086 GPSM2P81274 684 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 HTRA3P83110 453 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 GCKRQ14397 625 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 AOC3Q16853 763 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 BEND3Q5T5X7 828 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 TTLL11Q8NHH1 800 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 DNAAF4Q8WXU2 420 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 MYH16Q9H6N6 1097 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 POLLQ9UGP5 575 aa13.67□□□□□ -0.22
CD44-227ENST00000528086 YDJCA8MPS7 323 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 PDE8AO60658 829 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 RPS8P62241 208 aaKnown RBP13.66□□□□□ -0.22
CD44-227ENST00000528086 FKBP5Q13451 457 aaPredicted RBP13.66□□□□□ -0.22
CD44-227ENST00000528086 DPY19L2Q6NUT2 758 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 UBE3BQ7Z3V4 1068 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 MPNDQ8N594 471 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 MRPL50Q8N5N7 158 aaKnown RBP13.66□□□□□ -0.22
CD44-227ENST00000528086 DNAJC5GQ8N7S2 189 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 GPR101Q96P66 508 aaPredicted RBP13.66□□□□□ -0.22
CD44-227ENST00000528086 CHMP4AQ9BY43 222 aa13.66□□□□□ -0.22
CD44-227ENST00000528086 ZNF646O15015 1829 aaPredicted RBP13.65□□□□□ -0.22
CD44-227ENST00000528086 SCNN1DP51172 638 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 KIAA2012Q0VF49 1180 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 GRIPAP1Q4V328 841 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 LARGE2Q8N3Y3 721 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 LINS1Q8NG48 757 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 PLA2G12BQ9BX93 195 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 TAF1DQ9H5J8 278 aaPredicted RBP13.65□□□□□ -0.22
CD44-227ENST00000528086 GREM2Q9H772 168 aa13.65□□□□□ -0.22
CD44-227ENST00000528086 E9PSI1 815 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 PPIP5K2O43314 1243 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 CTSWP56202 376 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 CXCL9Q07325 125 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 FSTL1Q12841 308 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 EPHA10Q5JZY3 1008 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 DPP8Q6V1X1 898 aaPredicted RBP13.64□□□□□ -0.23
CD44-227ENST00000528086 SSH1Q8WYL5 1049 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 KCNQ5Q9NR82 932 aa13.64□□□□□ -0.23
CD44-227ENST00000528086 A0A1B0GUL6 1792 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 RTL9Q8NET4 1388 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 CSF1RP07333 972 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 FOXO4P98177 505 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 GPC2Q8N158 579 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 KAZALD1Q96I82 304 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 PCNTO95613 3336 aa13.63□□□□□ -0.23
CD44-227ENST00000528086 SHTN1A0MZ66 631 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 EPS15P42566 896 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 NEXNQ0ZGT2 675 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 CCDC152Q4G0S7 254 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 DIEXFQ68CQ4 756 aaKnown RBP13.62□□□□□ -0.23
CD44-227ENST00000528086 TMC4Q7Z404 712 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 TBC1D16Q8TBP0 767 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 VPS33BQ9H267 617 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 PODXL2Q9NZ53 605 aa13.62□□□□□ -0.23
CD44-227ENST00000528086 NSFL1CQ9UNZ2 370 aaKnown RBP13.62□□□□□ -0.23
CD44-227ENST00000528086 FAM161AQ3B820 660 aa13.61□□□□□ -0.23
CD44-227ENST00000528086 NIM1KQ8IY84 436 aa13.61□□□□□ -0.23
CD44-227ENST00000528086 C16orf71Q8IYS4 520 aaPredicted RBP13.61□□□□□ -0.23
CD44-227ENST00000528086 SMC1BQ8NDV3 1235 aa13.61□□□□□ -0.23
CD44-227ENST00000528086 JDP2Q8WYK2 163 aa13.61□□□□□ -0.23
CD44-227ENST00000528086 ZNRF3Q9ULT6 936 aa13.61□□□□□ -0.23
CD44-227ENST00000528086 PSME4Q14997 1843 aa13.61□□□□□ -0.23
CD44-227ENST00000528086 ITGBL1O95965 494 aaPredicted RBP13.6□□□□□ -0.23
CD44-227ENST00000528086 EPHX2P34913 555 aa13.6□□□□□ -0.23
CD44-227ENST00000528086 BCL2L13Q9BXK5 485 aa13.6□□□□□ -0.23
CD44-227ENST00000528086 HACL1Q9UJ83 578 aa13.6□□□□□ -0.23
CD44-227ENST00000528086 MINPP1Q9UNW1 487 aa13.6□□□□□ -0.23
CD44-227ENST00000528086 GJA3Q9Y6H8 435 aa13.6□□□□□ -0.23
CD44-227ENST00000528086 RIMBP2O15034 1052 aa13.59□□□□□ -0.23
CD44-227ENST00000528086 RAD17O75943 681 aa13.59□□□□□ -0.23
CD44-227ENST00000528086 APLP1P51693 650 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms