RNA–Protein interactions for RNA: ENST00000523799.5

CCNC-215, Transcript of cyclin C, human

TSL 3 BASIC

Gene CCNC, Length 1,035 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNC-215	ENST00000523799	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.46	□□□□□ -0.57
CCNC-215	ENST00000523799	MFSD10	Q14728	455 aa		11.45	□□□□□ -0.58
CCNC-215	ENST00000523799	PLPP6	Q8IY26	295 aa		11.45	□□□□□ -0.58
CCNC-215	ENST00000523799	CCDC24	Q8N4L8	307 aa		11.45	□□□□□ -0.58
CCNC-215	ENST00000523799	LARP6	Q9BRS8	491 aa	Known RBP	11.45	□□□□□ -0.58
CCNC-215	ENST00000523799	UBR2	Q8IWV8	1755 aa		11.45	□□□□□ -0.58
CCNC-215	ENST00000523799	MRC1	P22897	1456 aa		11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	IARS	P41252	1262 aa	Known RBP	11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	AKAP4	Q5JQC9	854 aa		11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	SAPCD2	Q86UD0	394 aa		11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	JDP2	Q8WYK2	163 aa		11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	GCC1	Q96CN9	775 aa		11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	BCOR	Q6W2J9	1755 aa		11.44	□□□□□ -0.58
CCNC-215	ENST00000523799	NPR1	P16066	1061 aa		11.43	□□□□□ -0.58
CCNC-215	ENST00000523799	EIF6	P56537	245 aa	Known RBP	11.43	□□□□□ -0.58
CCNC-215	ENST00000523799	SOX10	P56693	466 aa		11.43	□□□□□ -0.58
CCNC-215	ENST00000523799	SLC39A6	Q13433	755 aa		11.43	□□□□□ -0.58
CCNC-215	ENST00000523799	USP50	Q70EL3	339 aa	Predicted RBP	11.43	□□□□□ -0.58
CCNC-215	ENST00000523799	FMR1	Q06787	632 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
CCNC-215	ENST00000523799	PPP1R15B	Q5SWA1	713 aa		11.42	□□□□□ -0.58
CCNC-215	ENST00000523799	NPM2	Q86SE8	214 aa	Known RBP	11.42	□□□□□ -0.58
CCNC-215	ENST00000523799	ZSWIM6	Q9HCJ5	1215 aa		11.42	□□□□□ -0.58
CCNC-215	ENST00000523799	TRAF5	O00463	557 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	TNNT2	P45379	298 aa	Predicted RBP	11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	NOG	Q13253	232 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	CIAPIN1	Q6FI81	312 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	AEBP1	Q8IUX7	1158 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	SYNE4	Q8N205	404 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	LGR6	Q9HBX8	967 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	TBC1D2B	Q9UPU7	963 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	GJA3	Q9Y6H8	435 aa		11.41	□□□□□ -0.58
CCNC-215	ENST00000523799	KLRG2	A4D1S0	409 aa	Predicted RBP	11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	RNMT	O43148	476 aa	Known RBP	11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	ALDH1B1	P30837	517 aa		11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	IL6ST	P40189	918 aa	Predicted RBP	11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	SCNN1D	P51172	638 aa		11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	SULT6B1	Q6IMI4	303 aa		11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	NBPF15	Q8N660	670 aa		11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	DDX27	Q96GQ7	796 aa	Known RBP	11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	PSMD1	Q99460	953 aa		11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	WDR70	Q9NW82	654 aa		11.4	□□□□□ -0.58
CCNC-215	ENST00000523799	AKAP11	Q9UKA4	1901 aa		11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	CELF2	O95319	508 aa	Known RBP	11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	EPS15	P42566	896 aa		11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	TTC5	Q8N0Z6	440 aa		11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	SAGE1	Q9NXZ1	904 aa		11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.39	□□□□□ -0.59
CCNC-215	ENST00000523799	CAMTA2	O94983	1202 aa		11.38	□□□□□ -0.59
CCNC-215	ENST00000523799	GRIPAP1	Q4V328	841 aa		11.38	□□□□□ -0.59
CCNC-215	ENST00000523799	VARS2	Q5ST30	1063 aa	Known RBP	11.38	□□□□□ -0.59
CCNC-215	ENST00000523799	ADARB2	Q9NS39	739 aa	Known RBP	11.38	□□□□□ -0.59
CCNC-215	ENST00000523799	CC2D2B	Q6DHV5	1058 aa		11.37	□□□□□ -0.59
CCNC-215	ENST00000523799	GPR153	Q6NV75	609 aa		11.37	□□□□□ -0.59
CCNC-215	ENST00000523799	OLFM4	Q6UX06	510 aa		11.37	□□□□□ -0.59
CCNC-215	ENST00000523799	CLEC4G	Q6UXB4	293 aa		11.37	□□□□□ -0.59
CCNC-215	ENST00000523799	TPTE2	Q6XPS3	522 aa		11.37	□□□□□ -0.59
CCNC-215	ENST00000523799	ZNF652	Q9Y2D9	606 aa		11.36	□□□□□ -0.59
CCNC-215	ENST00000523799	HEG1	Q9ULI3	1381 aa		11.36	□□□□□ -0.59
CCNC-215	ENST00000523799	SNED1	Q8TER0	1413 aa		11.35	□□□□□ -0.59
CCNC-215	ENST00000523799	MKI67	P46013	3256 aa	Known RBP	11.35	□□□□□ -0.59
CCNC-215	ENST00000523799	DZIP3	Q86Y13	1208 aa	Known RBP	11.35	□□□□□ -0.59
CCNC-215	ENST00000523799	ZC3H15	Q8WU90	426 aa	Known RBP	11.35	□□□□□ -0.59
CCNC-215	ENST00000523799	GPRC5D	Q9NZD1	345 aa		11.35	□□□□□ -0.59
CCNC-215	ENST00000523799	PGAP2	Q9UHJ9	254 aa		11.35	□□□□□ -0.59
CCNC-215	ENST00000523799	COL4A5	P29400	1685 aa		11.34	□□□□□ -0.59
CCNC-215	ENST00000523799	HABP4	Q5JVS0	413 aa	Known RBP	11.34	□□□□□ -0.59
CCNC-215	ENST00000523799	CTU1	Q7Z7A3	348 aa	Known RBP	11.34	□□□□□ -0.59
CCNC-215	ENST00000523799	LARGE2	Q8N3Y3	721 aa		11.34	□□□□□ -0.59
CCNC-215	ENST00000523799	PTCD2	Q8WV60	388 aa	Known RBP	11.34	□□□□□ -0.59
CCNC-215	ENST00000523799	ZNF496	Q96IT1	587 aa	Predicted RBP	11.34	□□□□□ -0.59
CCNC-215	ENST00000523799	A1BG	P04217	495 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	IL13	P35225	146 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	PKN2	Q16513	984 aa	Known RBP	11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	ARSI	Q5FYB1	569 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	ZNF790	Q6PG37	636 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	CDC37L1	Q7L3B6	337 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	ZNF408	Q9H9D4	720 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	PCDHGA4	Q9Y5G9	962 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	CDHR2	Q9BYE9	1310 aa		11.33	□□□□□ -0.6
CCNC-215	ENST00000523799	SIPA1L3	O60292	1781 aa	Predicted RBP	11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	HUNK	P57058	714 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	NIM1K	Q8IY84	436 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	OXER1	Q8TDS5	423 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.32	□□□□□ -0.6	5e-7	■■■■■ 27.9
CCNC-215	ENST00000523799	CCDC102A	Q96A19	550 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	ZIC5	Q96T25	663 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	VPS33B	Q9H267	617 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	HPS5	Q9UPZ3	1129 aa		11.32	□□□□□ -0.6
CCNC-215	ENST00000523799	TRPA1	O75762	1119 aa		11.31	□□□□□ -0.6
CCNC-215	ENST00000523799	CAMK2B	Q13554	666 aa		11.31	□□□□□ -0.6
CCNC-215	ENST00000523799	RGMB	Q6NW40	437 aa		11.31	□□□□□ -0.6
CCNC-215	ENST00000523799	ZNF687	Q8N1G0	1237 aa		11.31	□□□□□ -0.6
CCNC-215	ENST00000523799	FMNL2	Q96PY5	1086 aa		11.31	□□□□□ -0.6
CCNC-215	ENST00000523799	RNF186	Q9NXI6	227 aa		11.31	□□□□□ -0.6
CCNC-215	ENST00000523799	FAM155A	B1AL88	458 aa	Predicted RBP	11.3	□□□□□ -0.6
CCNC-215	ENST00000523799	GTF2E1	P29083	439 aa	Predicted RBP	11.3	□□□□□ -0.6
CCNC-215	ENST00000523799	TEF	Q10587	303 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms