RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 RAI14Q9P0K7 980 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 LRP2BPQ9P2M1 347 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 IDH1O75874 414 aaKnown RBP12.97□□□□□ -0.33
TCOF1-211ENST00000513346 CFAP65Q6ZU64 1925 aaKnown RBP12.97□□□□□ -0.33
TCOF1-211ENST00000513346 KDM6BO15054 1643 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 MICALL1Q8N3F8 863 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 YTHDC2Q9H6S0 1430 aaKnown RBP12.97□□□□□ -0.33
TCOF1-211ENST00000513346 ZPR1O75312 459 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 ZNF75DP51815 510 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 AK2P54819 239 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 UBASH3AP57075 661 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 GUCY1B3Q02153 619 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 RNF187Q5TA31 235 aaPredicted RBP12.97□□□□□ -0.33
TCOF1-211ENST00000513346 HYPKQ9NX55 129 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 CTNNA3Q9UI47 895 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 GCC2Q8IWJ2 1684 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 HMGB1P09429 215 aaKnown RBP12.97□□□□□ -0.33
TCOF1-211ENST00000513346 C8orf76Q96K31 380 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 PLCD4Q9BRC7 762 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 VPS18Q9P253 973 aa12.97□□□□□ -0.33
TCOF1-211ENST00000513346 IBSPP21815 317 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-211ENST00000513346 ABCF2Q9UG63 623 aa12.96□□□□□ -0.33
TCOF1-211ENST00000513346 VAMP4O75379 141 aa12.96□□□□□ -0.33
TCOF1-211ENST00000513346 LTKP29376 864 aa12.96□□□□□ -0.33
TCOF1-211ENST00000513346 TRIM22Q8IYM9 498 aa12.96□□□□□ -0.33
TCOF1-211ENST00000513346 EVI5LQ96CN4 794 aa12.96□□□□□ -0.33
TCOF1-211ENST00000513346 TXLNAP40222 546 aa12.96□□□□□ -0.34
TCOF1-211ENST00000513346 TDO2P48775 406 aa12.96□□□□□ -0.34
TCOF1-211ENST00000513346 CT47A1Q5JQC4 288 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-211ENST00000513346 CCDC91Q7Z6B0 441 aa12.96□□□□□ -0.34
TCOF1-211ENST00000513346 TSPYL6Q8N831 410 aa12.96□□□□□ -0.34
TCOF1-211ENST00000513346 ORAI2Q96SN7 254 aa12.96□□□□□ -0.34
TCOF1-211ENST00000513346 LUC7LQ9NQ29 371 aaKnown RBP12.96□□□□□ -0.34
TCOF1-211ENST00000513346 TUBB4BP68371 445 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 ECHDC1Q9NTX5 307 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 NPATQ14207 1427 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 PI4KAP2A4QPH2 592 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 ERLIN2O94905 339 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 RBM5P52756 815 aaKnown RBP eCLIP12.95□□□□□ -0.34
TCOF1-211ENST00000513346 PI4KAP1Q8N8J0 262 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 AKAP2Q9Y2D5 859 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 STIM1Q13586 685 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 CEP85Q6P2H3 762 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 A0A087WZG4 1122 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 CHMLP26374 656 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 EVCP57679 992 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 PKP1Q13835 747 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 NBPF11Q86T75 865 aa12.95□□□□□ -0.34
TCOF1-211ENST00000513346 TRMT112Q9UI30 125 aaKnown RBP12.95□□□□□ -0.34
TCOF1-211ENST00000513346 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CEP112Q8N8E3 955 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CPLX3Q8WVH0 158 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 TEX13AQ9BXU3 409 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-211ENST00000513346 BOLA2Q9H3K6 86 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 IFIT5Q13325 482 aaKnown RBP12.94□□□□□ -0.34
TCOF1-211ENST00000513346 KRT24Q2M2I5 525 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CBX8Q9HC52 389 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-211ENST00000513346 ZNF521Q96K83 1311 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CTAGE15A4D2H0 777 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CTAGE8P0CG41 777 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CTAGE6Q86UF2 777 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 CTAGE4Q8IX94 777 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 NUP133Q8WUM0 1156 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 ZBTB3Q9H5J0 574 aa12.94□□□□□ -0.34
TCOF1-211ENST00000513346 IFIT1P09914 478 aaKnown RBP12.93□□□□□ -0.34
TCOF1-211ENST00000513346 ABCC1P33527 1531 aa12.93□□□□□ -0.34
TCOF1-211ENST00000513346 IMMTQ16891 758 aaKnown RBP12.93□□□□□ -0.34
TCOF1-211ENST00000513346 CNNM3Q8NE01 707 aa12.93□□□□□ -0.34
TCOF1-211ENST00000513346 HMG20BQ9P0W2 317 aa12.93□□□□□ -0.34
TCOF1-211ENST00000513346 EBAG9O00559 213 aa12.93□□□□□ -0.34
TCOF1-211ENST00000513346 ABCA8O94911 1581 aa12.93□□□□□ -0.34
TCOF1-211ENST00000513346 MRPS27Q92552 414 aaKnown RBP12.93□□□□□ -0.34
TCOF1-211ENST00000513346 AIDAQ96BJ3 306 aa12.93□□□□□ -0.34
TCOF1-211ENST00000513346 CCDC8Q9H0W5 538 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-211ENST00000513346 TMEM2Q9UHN6 1383 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 TUBBP07437 444 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 NF2P35240 595 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 MTHFSDQ2M296 383 aaKnown RBP12.92□□□□□ -0.34
TCOF1-211ENST00000513346 ZSCAN29Q8IWY8 852 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-211ENST00000513346 UBAC1Q9BSL1 405 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 ISM2Q6H9L7 571 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 HDXQ7Z353 690 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 LIG1P18858 919 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 EIF5P55010 431 aaKnown RBP12.92□□□□□ -0.34
TCOF1-211ENST00000513346 KLHL10Q6JEL2 608 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 RHPN1Q8TCX5 695 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 IFNKQ9P0W0 207 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 TRPM2O94759 1503 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 GPTP24298 496 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 PPP1R42Q7Z4L9 355 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 NEK1Q96PY6 1258 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 ZNF215Q9UL58 517 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-211ENST00000513346 MAP3K2Q9Y2U5 619 aa12.92□□□□□ -0.34
TCOF1-211ENST00000513346 CCT2P78371 535 aaKnown RBP12.91□□□□□ -0.34
TCOF1-211ENST00000513346 ZSCAN26Q16670 478 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 PYCARDQ9ULZ3 195 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 ARHGEF5Q12774 1597 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 CD2BP2O95400 341 aaKnown RBP12.91□□□□□ -0.34
TCOF1-211ENST00000513346 SYCP1Q15431 976 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms